VHE781
Library VH
(Link to library)
Clone ID VHE781
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15690-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHE781 (VHE781Q) /CSM/VH/VHE7-D/VHE781Q.Seq.d/
XXXXXXXXXXTCATCTCAAAGAATTTAGATTCACTCGTTGCCAAAGGTGAAAAGGATGAT
CCAATGAGAATCATTATGAAGGAACTCGATGAATTTGGTCCACCACCAGATATTGCTGCC
GATGATGATCGTGAAGTTCAATTGANTCTTTCCAATAAATTCCAAAAAACCATTGAAGAG
GAATTATCACCAGGTGAAAGTCTTATCTCTCAAACCAAAGGAGATGGTCATNTCTTTACT
TCGTGATCTTCCAAATCTTCCAGAACAAAAAGACCAATATGATGAACCACCCAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---ISKNLDSLVAKGEKDDPMRIIMKELDEFGPPPDIAADDDREVQLXLSNKFQKTIEEE
LSPGESLISQTKGDGHXFTS*sskssrtkrpi**ttq


Translated Amino Acid sequence (All Frames)
Frame A:
---hlkefrftrcqr*kg*snenhyegtr*iwsttryccr**s*ssixsfq*ipknh*rg
iitr*ksylsnqrrwsxlyfvifqifqnkktnmmnhp


Frame B:
---ISKNLDSLVAKGEKDDPMRIIMKELDEFGPPPDIAADDDREVQLXLSNKFQKTIEEE
LSPGESLISQTKGDGHXFTS*sskssrtkrpi**ttq


Frame C:
---sqri*ihslpkvkrmiq*esl*rnsmnlvhhqillpmmivkfn*xfpinskkplkrn
yhqvkvlslkpkemvxsllrdlpnlpeqkdqydepp


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE781 (VHE781Q) /CSM/VH/VHE7-D/VHE781Q.Seq.d/ 551 e-156
VHE881 (VHE881Q) /CSM/VH/VHE8-D/VHE881Q.Seq.d/ 517 e-146
AHF182 (AHF182Q) /CSM/AH/AHF1-D/AHF182Q.Seq.d/ 496 e-139
AHQ487 (AHQ487Q) /CSM/AH/AHQ4-D/AHQ487Q.Seq.d/ 313 8e-85
CHM216 (CHM216Q) /CSM/CH/CHM2-A/CHM216Q.Seq.d/ 311 3e-84
SLB820 (SLB820Q) /CSM/SL/SLB8-A/SLB820Q.Seq.d/ 264 7e-70
CHM205 (CHM205Q) /CSM/CH/CHM2-A/CHM205Q.Seq.d/ 198 3e-50
AHH590 (AHH590Q) /CSM/AH/AHH5-D/AHH590Q.Seq.d/ 131 6e-30
SHG228 (SHG228Q) /CSM/SH/SHG2-B/SHG228Q.Seq.d/ 129 3e-29
SHD883 (SHD883Q) /CSM/SH/SHD8-D/SHD883Q.Seq.d/ 129 3e-29

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L75794|L75794.1 Dictyostelium discoideum RasGTPase-activating protein gene, complete cds. 402 e-137 2
U81156|U81156.1 Dictyostelium discoideum RasGAP1 (rgaA) gene, complete cds. 402 e-137 2
DR420462|DR420462.1 gPGC_EST10304 Embryonic gonadal PGC cDNA Library Gallus gallus cDNA 5', mRNA sequence. 38 0.017 2
DW131035|DW131035.1 CLSX7673.b1_B24.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX7673, mRNA sequence. 48 0.14 1
DW072068|DW072068.1 CLLZ3494.b2_K09.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLZ3494, mRNA sequence. 46 0.57 1
DY967430|DY967430.1 CLSM18541.b1_J03.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM18541, mRNA sequence. 46 0.57 1
EJ772125|EJ772125.1 1092970403799 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002059684 5', genomic survey sequence. 46 0.57 1
EJ746122|EJ746122.1 1092962061668 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002059684 3', genomic survey sequence. 46 0.57 1
ER551633|ER551633.1 1093016239361 Global-Ocean-Sampling_GS-35-01-01-1P5KB marine metagenome genomic clone 1061002511764 3', genomic survey sequence. 38 0.61 2
CN969773|CN969773.1 17270_123-014-91 Fundulus Heteroclitus Liver Fundulus heteroclitus cDNA similar to 40S ribosomal protein S11, mRNA sequence. 44 2.3 1
dna update 2007. 9. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U81156_1(U81156|pid:none) Dictyostelium discoideum RasGAP1 (rgaA... 134 8e-31
AE016877_4690(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 33 3.1
CP001322_2924(CP001322|pid:none) Desulfatibacillum alkenivorans ... 32 6.9

protein update 2009. 2.28
PSORT

psg: 0.30 gvh: 0.25 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VHE781 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHE781Z
3' end seq.
>VHE781Z.Seq
NNNNNNNNNNTCATCTCAAAGAATTTAGATTCACTCGTTGCCAAAGGTGAAAAGGATGAT
CCAATGAGAATCATTATGAAGGAACTCGATGAATTTGGTCCACCACCAGATATTGCTGCC
GATGATGATCGTGAAGTTCAATTGANTCTTTCCAATAAATTCCAAAAAACCATTGAAGAG
GAATTATCACCAGGTGAAAGTCTTATCTCTCAAACCAAAGGAGATGGTCATNTCTTTACT
TCGTGATCTTCCAAATCTTCCAGAACAAAAAGACCAATATGATGAACCACCCAA
Length of 3' end seq. 294
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -