VHE759
Library VH
(Link to library)
Clone ID VHE759
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11170-1
Original site URL
Representative seq. ID VHE759P
(Link to Original site)
Representative DNA sequence
>VHE759 (VHE759Q) /CSM/VH/VHE7-C/VHE759Q.Seq.d/
AAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATT
TATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAA
AAAAAAAAXXXXXXXXXXGTGGTGGTGGTGGTGGTGGTNAAGTTCAAGCACCAGTTAATA
AAGTTGCTGTATTTGGTGGTGATAGATCACAAGCAATTCAAATTAGTGGAGCATTTACAA
GATTCCAAGGTAGAATTAATTTAGAATTAAATCTTTTGAATACAAGTCAACAAGGTATGT
CAAAATTCAAGATTCAATTTTATCAAAATAGTTTTGGTATTTCACCAGCTGATCAAATCT
TATCATGTGGTGCTATTGAAGTAGGCCAAAGCACTGATGTCACAATTCCAATCTCATGCA
ATGGTCAAATCTCAAATCCATTGAATCCAGTCATTGATATGGCAATGATGGTATTACCAA
GTCAAGAGAGATTCTACTTTAAGATGAATTTCCCATTACTTTGTCTATTGACAGAAACTG
GTCGTCTCGATCGTGAATCTTATTTATCCATGTGGAAATCAATTCCAGAATCAAATGAAC
GTTCAGTTGAAATTCAAGTACGTTTACCACATGTAGATGTTGACTCTATCNTTCGTCGTT
TAAATAGTAAGAATATCTTTGAAATCGTTAGAAAGANAGCTNCNAATCAAGCAATNTCTT
TC
sequence update 2002.10.25
Translated Amino Acid sequence
inthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---GGGGGGXVQAPVNKVAVFGGDRSQAIQISGAFTRFQGRINLELNLLNTSQQGMSKFK
IQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVIDMAMMVLPSQER
FYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHVDVDSIXRRLNSK
NIFEIVRKXAXNQAXSF


Translated Amino Acid sequence (All Frames)
Frame A:
kltrtyh*niniihqelifiyl*yffkritihy*svvlv*kk---

---vvvvvvvkfkhqlikllylvvidhkqfklvehlqdskveli*n*if*iqvnkvcqns
rfnfikivlvfhqliksyhvvllk*akalmsqfqshamvksqih*iqsliwq*wyyqvkr
dstlr*ishyfvy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyhm*mltlsfvv*iv
rislkslerxlxikqxl

Frame B:
n*hahiikili*siknlylfiyniflrglqytikvly*ykkk---

---wwwwwwxsssts**scciww**itsnsn*wsiykipr*n*friksfeykstryvkiq
dsilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiessh*ygndgitksre
ill*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstfttcrc*lyxssfk**
eyl*nr*kxsxxssnxf

Frame C:
inthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---GGGGGGXVQAPVNKVAVFGGDRSQAIQISGAFTRFQGRINLELNLLNTSQQGMSKFK
IQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVIDMAMMVLPSQER
FYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHVDVDSIXRRLNSK
NIFEIVRKXAXNQAXSF

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE759 (VHE759Q) /CSM/VH/VHE7-C/VHE759Q.Seq.d/ 1086 0.0
SHA785 (SHA785Q) /CSM/SH/SHA7-D/SHA785Q.Seq.d/ 1078 0.0
CHS405 (CHS405Q) /CSM/CH/CHS4-A/CHS405Q.Seq.d/ 1078 0.0
VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/ 1070 0.0
SHF674 (SHF674Q) /CSM/SH/SHF6-D/SHF674Q.Seq.d/ 1070 0.0
SHD615 (SHD615Q) /CSM/SH/SHD6-A/SHD615Q.Seq.d/ 1070 0.0
SHA570 (SHA570Q) /CSM/SH/SHA5-C/SHA570Q.Seq.d/ 1070 0.0
SHA168 (SHA168Q) /CSM/SH/SHA1-C/SHA168Q.Seq.d/ 1070 0.0
AHK359 (AHK359Q) /CSM/AH/AHK3-C/AHK359Q.Seq.d/ 1070 0.0
AHE651 (AHE651Q) /CSM/AH/AHE6-C/AHE651Q.Seq.d/ 1070 0.0

own update 2002.12.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC187854|AC187854.2 Populus trichocarpa clone Pop1-11B14, complete sequence. 38 0.27 5
CX072513|CX072513.1 UCRCS08_28E10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-4.g, mRNA sequence. 46 1.5 1
CX072512|CX072512.1 UCRCS08_28E10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-5.b, mRNA sequence. 46 1.5 1
AC140642|AC140642.5 Macaca mulatta clone CH250-288A22, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 46 1.5 1
ER400257|ER400257.1 1095349054847 Global-Ocean-Sampling_GS-34-01-01-1P5-1P8KB marine metagenome genomic clone 1061005430691 5', genomic survey sequence. 46 1.5 1
EJ807179|EJ807179.1 1093017468100 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002728084 5', genomic survey sequence. 46 1.5 1
EJ328016|EJ328016.1 1092963405361 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002327787 5', genomic survey sequence. 46 1.5 1
AC138052|AC138052.2 Felis catus clone RP86-222L20, WORKING DRAFT SEQUENCE, 2 ordered pieces. 38 1.8 3
EE557842|EE557842.1 BNZB_RP_021_H10_28APR2004_066 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence. 44 5.8 1
DQ280172|DQ280172.1 Muntiacus muntjak vaginalis chromosome 3+X clone 09A2, *** SEQUENCING IN PROGRESS ***, 25 ordered pieces. 44 5.8 1
dna update 2007. 9. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=... 357 2e-97
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful... 108 2e-22
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1... 108 2e-22
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful... 108 2e-22
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ... 108 2e-22
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful... 108 2e-22
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,... 108 2e-22
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet... 108 2e-22
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0... 107 3e-22
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF... 107 5e-22
protein update 2009. 7. 1
PSORT

psg: 0.75 gvh: 0.34 alm: 0.45 top: 0.53 tms: 0.00 mit: -0.03 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: vesicles of secretory system
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for VHE759 is nuc

5' end seq. ID VHE759F
5' end seq.
>VHE759F.Seq
AAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATT
TATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAA
AAAAAAAANNNNNNNNNN
Length of 5' end seq. 138
3' end seq. ID VHE759Z
3' end seq.
>VHE759Z.Seq
NNNNNNNNNNGTGGTGGTGGTGGTGGTGGTNAAGTTCAAGCACCAGTTAATAAAGTTGCT
GTATTTGGTGGTGATAGATCACAAGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAA
GGTAGAATTAATTTAGAATTAAATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTC
AAGATTCAATTTTATCAAAATAGTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGT
GGTGCTATTGAAGTAGGCCAAAGCACTGATGTCACAATTCCAATCTCATGCAATGGTCAA
ATCTCAAATCCATTGAATCCAGTCATTGATATGGCAATGATGGTATTACCAAGTCAAGAG
AGATTCTACTTTAAGATGAATTTCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTC
GATCGTGAATCTTATTTATCCATGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTT
GAAATTCAAGTACGTTTACCACATGTAGATGTTGACTCTATCNTTCGTCGTTTAAATAGT
AAGAATATCTTTGAAATCGTTAGAAAGANAGCTNCNAATCAAGCAATNTCTTTC
Length of 3' end seq. 594
Connected seq. ID VHE759P
Connected seq.
>VHE759P.Seq
AAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATT
TATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAA
AAAAAAAA----------GTGGTGGTGGTGGTGGTGGTNAAGTTCAAGCACCAGTTAATA
AAGTTGCTGTATTTGGTGGTGATAGATCACAAGCAATTCAAATTAGTGGAGCATTTACAA
GATTCCAAGGTAGAATTAATTTAGAATTAAATCTTTTGAATACAAGTCAACAAGGTATGT
CAAAATTCAAGATTCAATTTTATCAAAATAGTTTTGGTATTTCACCAGCTGATCAAATCT
TATCATGTGGTGCTATTGAAGTAGGCCAAAGCACTGATGTCACAATTCCAATCTCATGCA
ATGGTCAAATCTCAAATCCATTGAATCCAGTCATTGATATGGCAATGATGGTATTACCAA
GTCAAGAGAGATTCTACTTTAAGATGAATTTCCCATTACTTTGTCTATTGACAGAAACTG
GTCGTCTCGATCGTGAATCTTATTTATCCATGTGGAAATCAATTCCAGAATCAAATGAAC
GTTCAGTTGAAATTCAAGTACGTTTACCACATGTAGATGTTGACTCTATCNTTCGTCGTT
TAAATAGTAAGAATATCTTTGAAATCGTTAGAAAGANAGCTNCNAATCAAGCAATNTCTT
TC
Length of connected seq. 712
Full length Seq ID -
Full length Seq. -
Length of full length seq. -