VHE757
Library VH
(Link to library)
Clone ID VHE757
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10794-1
Original site URL
Representative seq. ID VHE757P
(Link to Original site)
Representative DNA sequence
>VHE757 (VHE757Q) /CSM/VH/VHE7-C/VHE757Q.Seq.d/
TTAAACTTTATTTTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCT
CTTTAAACTCTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAAC
AAAAAAAAATGGTCAATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGTGAAA
ATATCANAAATATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATT
CATTAATTCAAAGAGCTGGTATTATTGCAGATAAGGTATCTGGTAATGCAGGATATATGT
CATGTCGTCCAGATGAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTC
ACTTTGAAATGCCAAAAGATGAGAAATTACCAACTGGTTGTAGCTCACACGAATTCTTGA
TCAATCTTATTGATTCACCAGGTCATGTTGATTTTAGTTCTGAAGTAACAGCAGCACTTC
GTGTTACCGATGGTGCATTGGTAGTTATCGATTGTGTTGAGGGTGTTTGTGTACAAACTG
AAACTGTTTTACGTCAAGCAATGGCTGAACGTATTAAACCXXXXXXXXXXTTAACTGATG
ATATTGATAATGGTTTGGTGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTCT
ATGATAAACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAAT
ATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGGTGTTCAATATCTTCATGAAATT
AAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAG
AAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCAT
AGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCNTCCCAACTATCA
GCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGT
ATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGT
CGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGT
CTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGAT
CATTGGAGTTCAATTGGTATCGTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATCAA
TTAGAAAGAGAAAAGGTTTAAATCCAAAATTACCA
sequence update 2002.10.25
Translated Amino Acid sequence
klyfsptlakl*fafvqlfslnsyy*nsf*KLSFLKKLKQKKMVNFTIDQIRSIMDRREN
IXNMSVIAHVDHGKTTLTDSLIQRAGIIADKVSGNAGYMSCRPDEQLRGITIKSSSVSLH
FEMPKDEKLPTGCSSHEFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVEGVCVQTE
TVLRQAMAERIK---

---LTDDIDNGLVAFNQDVKSRANYLYDKHSWDKNDAVNIWSFGPEYKGPNVLVNKTKGC
SISS*n*rlygfsipmdlk*rcimw*eneidsfqrl*cnascrcns*r*wsiysnnsscn
vcxptisstntfgtnvfg*y*ys*kwy*wyllctqs*krcchw*rtsywysiiqyqslss
cngiiwshc*ftfkycwssfpsmcf*slefnwyrgqdkrstevassirkrkglnpklp


Translated Amino Acid sequence (All Frames)
Frame A:
lnfifplhwpnfnlplynysl*tliikihfknshf*kn*nkkkwsilq*ikfvqlwivvk
isxicllllmlimvkllllih*fkelvllqirylvmqdichvvqmnnyvvlp*shhlfhf
tlkcqkmrnyqlvvahtns*sillihqvmlilvlk*qqhfvlpmvhw*lsivlrvfvykl
klfyvkqwlnvln---

---LTDDIDNGLVAFNQDVKSRANYLYDKHSWDKNDAVNIWSFGPEYKGPNVLVNKTKGC
SISS*n*rlygfsipmdlk*rcimw*eneidsfqrl*cnascrcns*r*wsiysnnsscn
vcxptisstntfgtnvfg*y*ys*kwy*wyllctqs*krcchw*rtsywysiiqyqslss
cngiiwshc*ftfkycwssfpsmcf*slefnwyrgqdkrstevassirkrkglnpklp

Frame B:
*tlffpyigqtliclctiilfkllllkfilktliskktktkkngqfynrsnsfnygss*k
yxkyvcycsc*sw*nysy*finskswyycr*giw*criyvmssr*titwyyhkviicfts
l*nakr*eitnwl*ltrildqsy*ftrsc*f*f*snsstscyrwcigsyrlc*gclctn*
ncftssng*ty*t---

---*lmilimvwwllikmlkvvpiisminilgirmmqltfghlvqnirvqmf*ltkpkgv
qylheikdsmvsafqwisnegvlcgekmrsirfnvydvmlhadaihrgsgqfipttrrvm
yasqlsaqptllepmylvdistpesgisgiysvlnrrrgvvigeerrigtplfnikaylp
vmesfgltadlrsstagqafpqcvfdhwssigivvkikdqlk*lhqlerekv*iqny

Frame C:
klyfsptlakl*fafvqlfslnsyy*nsf*KLSFLKKLKQKKMVNFTIDQIRSIMDRREN
IXNMSVIAHVDHGKTTLTDSLIQRAGIIADKVSGNAGYMSCRPDEQLRGITIKSSSVSLH
FEMPKDEKLPTGCSSHEFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVEGVCVQTE
TVLRQAMAERIK---

---n**y**wfggf*src*kscqlsl**tflg*e*cs*hlviwsri*gskcfs*qnqrvf
nifmklktlwfqhsngsqmkvyyvvrk*drfvstfmm*cfmpmqfievvvnlfqqlvv*c
mxpnyqlnqhfwnqciwlilvllkvvlvvstlysiveevlslvknvvlvlhysisklifl
*wnhlvslliyvqvllvklslnvfliigvqlvswsr*kin*ssfin*kekrfkskit

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE757 (VHE757Q) /CSM/VH/VHE7-C/VHE757Q.Seq.d/ 2240 0.0
VHJ795 (VHJ795Q) /CSM/VH/VHJ7-D/VHJ795Q.Seq.d/ 1390 0.0
AHQ218 (AHQ218Q) /CSM/AH/AHQ2-A/AHQ218Q.Seq.d/ 1390 0.0
SHF216 (SHF216Q) /CSM/SH/SHF2-A/SHF216Q.Seq.d/ 1378 0.0
AHM516 (AHM516Q) /CSM/AH/AHM5-A/AHM516Q.Seq.d/ 1376 0.0
AHL348 (AHL348Q) /CSM/AH/AHL3-B/AHL348Q.Seq.d/ 1376 0.0
AHE765 (AHE765Q) /CSM/AH/AHE7-C/AHE765Q.Seq.d/ 1376 0.0
AHD146 (AHD146Q) /CSM/AH/AHD1-B/AHD146Q.Seq.d/ 1376 0.0
AHC654 (AHC654Q) /CSM/AH/AHC6-C/AHC654Q.Seq.d/ 1376 0.0
AHB739 (AHB739Q) /CSM/AH/AHB7-B/AHB739Q.Seq.d/ 1376 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 240 e-142 9
X15386|X15386.1 Dictyostelium discoideum H6 gene mRNA. 228 7e-60 2
AY310285|AY310285.1 Scutigera coleoptrata voucher Scol elongation factor 2 mRNA, partial cds. 103 1e-30 3
EC822839|EC822839.1 SME00001738 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence. 123 1e-29 2
EC824047|EC824047.1 SME00009166 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence. 123 1e-29 2
EC825843|EC825843.1 SME00002609 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence. 123 2e-29 2
EC825885|EC825885.1 SME00004608 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence. 123 2e-29 2
CN563875|CN563875.1 taf95g04.x1 Hydra EST -Kiel 1 Hydra magnipapillata cDNA 3' similar to SW:EF2_MESAU P05086 ELONGATION FACTOR 2 ;, mRNA sequence. 70 7e-27 4
DY447957| Unknown (protein for MGC:55904) [Danio rerio], mRNA sequence. 70 1e-26 4
DY447570| Unknown (protein for MGC:55904) [Danio rerio], mRNA sequence. 70 1e-26 4
dna update 2007. 9. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 206 8e-66
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 205 7e-65
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 204 2e-64
(P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 204 2e-64
AK159514_1(AK159514|pid:none) Mus musculus osteoclast-like cell ... 204 2e-64
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 204 2e-64
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 204 2e-64
AJ278147_1(AJ278147|pid:none) Rattus norvegicus partial Ef-2 gen... 204 2e-64
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran... 205 2e-64
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 204 2e-64
protein update 2009. 7. 1
PSORT

psg: 0.66 gvh: 0.43 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: mitochondrial
20.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal

>> prediction for VHE757 is cyt

5' end seq. ID VHE757F
5' end seq.
>VHE757F.Seq
TTAAACTTTATTTTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCT
CTTTAAACTCTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAAC
AAAAAAAAATGGTCAATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGTGAAA
ATATCANAAATATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATT
CATTAATTCAAAGAGCTGGTATTATTGCAGATAAGGTATCTGGTAATGCAGGATATATGT
CATGTCGTCCAGATGAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTC
ACTTTGAAATGCCAAAAGATGAGAAATTACCAACTGGTTGTAGCTCACACGAATTCTTGA
TCAATCTTATTGATTCACCAGGTCATGTTGATTTTAGTTCTGAAGTAACAGCAGCACTTC
GTGTTACCGATGGTGCATTGGTAGTTATCGATTGTGTTGAGGGTGTTTGTGTACAAACTG
AAACTGTTTTACGTCAAGCAATGGCTGAACGTATTAAACCNNNNNNNNNN
Length of 5' end seq. 590
3' end seq. ID VHE757Z
3' end seq.
>VHE757Z.Seq
NNNNNNNNNNTTAACTGATGATATTGATAATGGTTTGGTGGCTTTTAATCAAGATGTTAA
AAGTCGTGCCAATTATCTCTATGATAAACATTCTTGGGATAAGAATGATGCAGTTAACAT
TTGGTCATTTGGTCCAGAATATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGGTG
TTCAATATCTTCATGAAATTAAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATG
AAGGTGTATTATGTGGTGAGAAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGC
TTCATGCCGATGCAATTCATAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAA
TGTATGCNTCCCAACTATCAGCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATA
TTAGTACTCCTGAAAGTGGTATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTG
TTGTCATTGGTGAAGAACGTCGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTC
CTGTAATGGAATCATTTGGTCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTT
TCCCTCAATGTGTTTTTGATCATTGGAGTTCAATTGGTATCGTGGTCAAGATAAAAGATC
AACTGAAGTAGCTTCATCAATTAGAAAGAGAAAAGGTTTAAATCCAAAATTACCA
Length of 3' end seq. 715
Connected seq. ID VHE757P
Connected seq.
>VHE757P.Seq
TTAAACTTTATTTTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCT
CTTTAAACTCTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAAC
AAAAAAAAATGGTCAATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGTGAAA
ATATCANAAATATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATT
CATTAATTCAAAGAGCTGGTATTATTGCAGATAAGGTATCTGGTAATGCAGGATATATGT
CATGTCGTCCAGATGAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTC
ACTTTGAAATGCCAAAAGATGAGAAATTACCAACTGGTTGTAGCTCACACGAATTCTTGA
TCAATCTTATTGATTCACCAGGTCATGTTGATTTTAGTTCTGAAGTAACAGCAGCACTTC
GTGTTACCGATGGTGCATTGGTAGTTATCGATTGTGTTGAGGGTGTTTGTGTACAAACTG
AAACTGTTTTACGTCAAGCAATGGCTGAACGTATTAAACC----------TTAACTGATG
ATATTGATAATGGTTTGGTGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTCT
ATGATAAACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAAT
ATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGGTGTTCAATATCTTCATGAAATT
AAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAG
AAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCAT
AGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCNTCCCAACTATCA
GCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGT
ATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGT
CGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGT
CTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGAT
CATTGGAGTTCAATTGGTATCGTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATCAA
TTAGAAAGAGAAAAGGTTTAAATCCAAAATTACCA
Length of connected seq. 1285
Full length Seq ID -
Full length Seq. -
Length of full length seq. -