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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE716
Library VH
(Link to library)
Clone ID VHE716
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15792-1
Original site URL
Representative seq. ID VHE716P
(Link to Original site)
Representative DNA sequence 
>VHE716 (VHE716Q) /CSM/VH/VHE7-A/VHE716Q.Seq.d/
ATTTGATCATTCACTTTTTTTTTTAATATTACCCAAAAATGTTTAGTTTAGGAAAATTGG
TTAAAAAAGATGCTTCTTTTTATAGATATATAACAAATGTTAATAAAGATTTAAAAATTA
AACCAATTACAAAGATATTAATTGCAAATAGAGGTGAAATTGCATGTCGTGTAATGAGAA
CAGCAAAATCAAAAGGTGTAAAAACCGTAGCAGTTTATAGTGAAGCAGATAANAATTCAT
TACATGTTTCAATGGCAGATGAGAGTTATTTAATTGGACCAGCAGCAGCCAAAGAGAGTT
ATTTATGTGGAAATAAGATCATAGATGTAGCAAAGAGATCTGGAGCACAAGCAATTCATC
CAGGTTATGGTTTCTTATCANAGAATTCANATTTTGCTGATCTCTGTGANAGAGAAGGTA
TCATTTTCATTGGACCACCATCAGATGCAATCAAAGCAATGGGTAGCAAAAGTGCCTCAA
AGGATATTATGATCAAAGCTGGCGTACCAACCATCCCAGGTTACCACGGTGXXXXXXXXX
XTGGTCAAGTTTAGGTGGTTTCCGTATTAATCATAATTTAAAAAAACAGGTTAAATTCAA
TCAAAAAGATAATAAAGTTGTTGTTAATGTTGAANTCATTGGTGGTGGTGGTGCTGCTGN
TAATGGTAAACATAACTTTAAAGTAACTTTAGATAATGGTAATGTCGTTGAAGTTTTAGA
TGCAAAATTNAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
liihfff*YYPKMFSLGKLVKKDASFYRYITNVNKDLKIKPITKILIANRGEIACRVMRT
AKSKGVKTVAVYSEADXNSLHVSMADESYLIGPAAAKESYLCGNKIIDVAKRSGAQAIHP
GYGFLSXNSXFADLCXREGIIFIGPPSDAIKAMGSKSASKDIMIKAGVPTIPGYHG---

---WSSLGGFRINHNLKKQVKFNQKDNKVVVNVEXIGGGGAAXNGKHNFKVTLDNGNVVE
VLDAKXN
Translated Amino Acid sequence (All Frames) 
Frame A:
i*sftfffnitqkclv*enwlkkmllfidi*qmliki*klnqlqry*lqievklhvv**e
qqnqkv*kp*qfivkqixihymfqwqmrvi*ldqqqpkrviyveirs*m*qrdlehkqfi
qvmvsyxrixillisvxekvsfsldhhqmqskqwvakvpqril*sklayqpsqvttv---

---WSSLGGFRINHNLKKQVKFNQKDNKVVVNVEXIGGGGAAXNGKHNFKVTLDNGNVVE
VLDAKXN

Frame B:
fdhslfflilpknv*frkig*krcffl*iynkc**rfkn*tnykdinck*r*ncmscnen
skikrcknrssl**sr*xfitcfngr*elfnwtsssqrelfmwk*dhrcskeiwstsnss
rlwflixefxfc*sl*xrryhfhwttircnqsng*qkclkgyydqswrtnhprlpr---

---gqv*vvsvliii*knrlnsikkiiklllmlxslvvvvllxmvnitlk*l*imvmslk
f*mqnx

Frame C:
liihfff*YYPKMFSLGKLVKKDASFYRYITNVNKDLKIKPITKILIANRGEIACRVMRT
AKSKGVKTVAVYSEADXNSLHVSMADESYLIGPAAAKESYLCGNKIIDVAKRSGAQAIHP
GYGFLSXNSXFADLCXREGIIFIGPPSDAIKAMGSKSASKDIMIKAGVPTIPGYHG---

---vkfrwfpy*s*fkktg*iqskr**scc*c*xhwwwwccx*w*t*l*snfr*w*cr*s
frckix
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE716 (VHE716Q) /CSM/VH/VHE7-A/VHE716Q.Seq.d/                       1263   0.0
VHP809 (VHP809Q) /CSM/VH/VHP8-A/VHP809Q.Seq.d/                        981   0.0
VHG722 (VHG722Q) /CSM/VH/VHG7-A/VHG722Q.Seq.d/                        981   0.0
VHB677 (VHB677Q) /CSM/VH/VHB6-D/VHB677Q.Seq.d/                        981   0.0
SFG531 (SFG531Q) /CSM/SF/SFG5-B/SFG531Q.Seq.d/                        981   0.0
VHC101 (VHC101Q) /CSM/VH/VHC1-A/VHC101Q.Seq.d/                        979   0.0
VHB831 (VHB831Q) /CSM/VH/VHB8-B/VHB831Q.Seq.d/                        969   0.0
AHL506 (AHL506Q) /CSM/AH/AHL5-A/AHL506Q.Seq.d/                        969   0.0
FC-BI24 (FC-BI24Q) /CSM/FC/FC-BI/FC-BI24Q.Seq.d/                      963   0.0
VFO504 (VFO504Q) /CSM/VF/VFO5-A/VFO504Q.Seq.d/                        961   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EC826322|EC826322.1 SME00006460 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
EC826295|EC826295.1 SME00006464 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
EC825669|EC825669.1 SME00008059 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
EC825555|EC825555.1 SME00002316 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
EC825347|EC825347.1 SME00004009 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
EC824932|EC824932.1 SME00005049 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
EC824911|EC824911.1 SME00004379 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
EC823757|EC823757.1 SME00010308 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
EC823579|EC823579.1 SME00001325 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
EC822932|EC822932.1 SME00009614 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    62   8e-09  2
dna update 2007. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KE6) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...   314   2e-84
AJ720239_1(AJ720239|pid:none) Gallus gallus mRNA for hypothetica...   196   6e-49
BC021382_1(BC021382|pid:none) Mus musculus methylcrotonoyl-Coenz...   196   6e-49
BC125958_1(BC125958|pid:none) Danio rerio zgc:154106, mRNA (cDNA...   196   6e-49
BX005105_1(BX005105|pid:none) Zebrafish DNA sequence from clone ...   196   6e-49
(Q99MR8) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...   196   6e-49
CU459003_2063(CU459003|pid:none) Magnetospirillum gryphiswaldens...   196   8e-49
AP007255_674(AP007255|pid:none) Magnetospirillum magneticum AMB-...   195   1e-48
AE014297_5001(AE014297|pid:none) Drosophila melanogaster chromos...   193   5e-48
(Q96RQ3) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...   193   5e-48
protein update 2009. 7. 1
PSORT 

 psg: 0.59  gvh: 0.34  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHE716 is cyt
5' end seq. ID VHE716F
5' end seq. 
>VHE716F.Seq
ATTTGATCATTCACTTTTTTTTTTAATATTACCCAAAAATGTTTAGTTTAGGAAAATTGG
TTAAAAAAGATGCTTCTTTTTATAGATATATAACAAATGTTAATAAAGATTTAAAAATTA
AACCAATTACAAAGATATTAATTGCAAATAGAGGTGAAATTGCATGTCGTGTAATGAGAA
CAGCAAAATCAAAAGGTGTAAAAACCGTAGCAGTTTATAGTGAAGCAGATAANAATTCAT
TACATGTTTCAATGGCAGATGAGAGTTATTTAATTGGACCAGCAGCAGCCAAAGAGAGTT
ATTTATGTGGAAATAAGATCATAGATGTAGCAAAGAGATCTGGAGCACAAGCAATTCATC
CAGGTTATGGTTTCTTATCANAGAATTCANATTTTGCTGATCTCTGTGANAGAGAAGGTA
TCATTTTCATTGGACCACCATCAGATGCAATCAAAGCAATGGGTAGCAAAAGTGCCTCAA
AGGATATTATGATCAAAGCTGGCGTACCAACCATCCCAGGTTACCACGGTGNNNNNNNNN
N
Length of 5' end seq. 541
3' end seq. ID VHE716Z
3' end seq. 
>VHE716Z.Seq
NNNNNNNNNNTGGTCAAGTTTAGGTGGTTTCCGTATTAATCATAATTTAAAAAAACAGGT
TAAATTCAATCAAAAAGATAATAAAGTTGTTGTTAATGTTGAANTCATTGGTGGTGGTGG
TGCTGCTGNTAATGGTAAACATAACTTTAAAGTAACTTTAGATAATGGTAATGTCGTTGA
AGTTTTAGATGCAAAATTNAAT
Length of 3' end seq. 202
Connected seq. ID VHE716P
Connected seq. 
>VHE716P.Seq
ATTTGATCATTCACTTTTTTTTTTAATATTACCCAAAAATGTTTAGTTTAGGAAAATTGG
TTAAAAAAGATGCTTCTTTTTATAGATATATAACAAATGTTAATAAAGATTTAAAAATTA
AACCAATTACAAAGATATTAATTGCAAATAGAGGTGAAATTGCATGTCGTGTAATGAGAA
CAGCAAAATCAAAAGGTGTAAAAACCGTAGCAGTTTATAGTGAAGCAGATAANAATTCAT
TACATGTTTCAATGGCAGATGAGAGTTATTTAATTGGACCAGCAGCAGCCAAAGAGAGTT
ATTTATGTGGAAATAAGATCATAGATGTAGCAAAGAGATCTGGAGCACAAGCAATTCATC
CAGGTTATGGTTTCTTATCANAGAATTCANATTTTGCTGATCTCTGTGANAGAGAAGGTA
TCATTTTCATTGGACCACCATCAGATGCAATCAAAGCAATGGGTAGCAAAAGTGCCTCAA
AGGATATTATGATCAAAGCTGGCGTACCAACCATCCCAGGTTACCACGGTG---------
-TGGTCAAGTTTAGGTGGTTTCCGTATTAATCATAATTTAAAAAAACAGGTTAAATTCAA
TCAAAAAGATAATAAAGTTGTTGTTAATGTTGAANTCATTGGTGGTGGTGGTGCTGCTGN
TAATGGTAAACATAACTTTAAAGTAACTTTAGATAATGGTAATGTCGTTGAAGTTTTAGA
TGCAAAATTNAAT
Length of connected seq. 723
Full length Seq ID -
Full length Seq. -
Length of full length seq. -