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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE708
Library VH
(Link to library)
Clone ID VHE708
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15792-1
Original site URL
Representative seq. ID VHE708P
(Link to Original site)
Representative DNA sequence 
>VHE708 (VHE708Q) /CSM/VH/VHE7-A/VHE708Q.Seq.d/
AATTTTCCTCAAACATCAATAATATATAGCAATAAACTAAATAAATAAATAAAAAAAAAA
ACAACAATCACTTTTTTTTTTTTTGGNTTTTTTNATAAAAAATTXXXXXXXXXXTAGTCC
AGGTAATAATTTAACAAGTCCAATTCGTTTTAATATAACCCNACAACAACAACAACAACA
ACAACAACAACAACNACAAAATAATAATGAAGAGATTGGCTAATTATG
sequence update 2002.10.25
Translated Amino Acid sequence 
nfpqtsiiysnklnk*IKKKTTITFFFFGFFXKK---

---SPGNNLTSPIRFNITXQQQQQQQQQQXQNNNEEIG*l
Translated Amino Acid sequence (All Frames) 
Frame A:
nfpqtsiiysnklnk*IKKKTTITFFFFGFFXKK---

---*sr**fnksnsf*ynpttttttttttttk***rdwlim

Frame B:
iflkhq*yiain*ink*kkkqqslffflxfxikn---

---SPGNNLTSPIRFNITXQQQQQQQQQQXQNNNEEIG*l

Frame C:
fssninni*q*tk*inkkknnnhffffwxfx*ki---

---vqvii*qvqfvli*pxnnnnnnnnnnxkiimkrlany
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI178 (VHI178Q) /CSM/VH/VHI1-D/VHI178Q.Seq.d/                        100   2e-20
VHE708 (VHE708Q) /CSM/VH/VHE7-A/VHE708Q.Seq.d/                        100   2e-20
SHL240 (SHL240Q) /CSM/SH/SHL2-B/SHL240Q.Seq.d/                        100   2e-20
SHI816 (SHI816Q) /CSM/SH/SHI8-A/SHI816Q.Seq.d/                        100   2e-20
SHI528 (SHI528Q) /CSM/SH/SHI5-B/SHI528Q.Seq.d/                        100   2e-20
SHG650 (SHG650Q) /CSM/SH/SHG6-C/SHG650Q.Seq.d/                        100   2e-20
SHG172 (SHG172Q) /CSM/SH/SHG1-C/SHG172Q.Seq.d/                        100   2e-20
SHF417 (SHF417Q) /CSM/SH/SHF4-A/SHF417Q.Seq.d/                        100   2e-20
SHE875 (SHE875Q) /CSM/SH/SHE8-D/SHE875Q.Seq.d/                        100   2e-20
SHE235 (SHE235Q) /CSM/SH/SHE2-B/SHE235Q.Seq.d/                        100   2e-20
own update 2002.12.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000444|CP000444.1 Shewanella sp. MR-7, complete genome.          42   6.8    1
BX322538|BX322538.9 Zebrafish DNA sequence from clone CH211-245G11 in linkage group 15.    42   6.8    1
dna update 2007. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...    37   0.17
protein update 2009. 2.28
PSORT 

 psg: 1.01  gvh: 0.39  alm: 0.53  top: 0.47  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VHE708 is cyt
5' end seq. ID VHE708F
5' end seq. 
>VHE708F.Seq
AATTTTCCTCAAACATCAATAATATATAGCAATAAACTAAATAAATAAATAAAAAAAAAA
ACAACAATCACTTTTTTTTTTTTTGGNTTTTTTNATAAAAAATTNNNNNNNNNN
Length of 5' end seq. 114
3' end seq. ID VHE708Z
3' end seq. 
>VHE708Z.Seq
NNNNNNNNNNTAGTCCAGGTAATAATTTAACAAGTCCAATTCGTTTTAATATAACCCNAC
AACAACAACAACAACAACAACAACAACAACNACAAAATAATAATGAAGAGATTGGCTAAT
TATG
Length of 3' end seq. 124
Connected seq. ID VHE708P
Connected seq. 
>VHE708P.Seq
AATTTTCCTCAAACATCAATAATATATAGCAATAAACTAAATAAATAAATAAAAAAAAAA
ACAACAATCACTTTTTTTTTTTTTGGNTTTTTTNATAAAAAATT----------TAGTCC
AGGTAATAATTTAACAAGTCCAATTCGTTTTAATATAACCCNACAACAACAACAACAACA
ACAACAACAACAACNACAAAATAATAATGAAGAGATTGGCTAATTATG
Length of connected seq. 218
Full length Seq ID -
Full length Seq. -
Length of full length seq. -