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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE705
Library VH
(Link to library)
Clone ID VHE705
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16438-1
Original site URL
Representative seq. ID VHE705P
(Link to Original site)
Representative DNA sequence 
>VHE705 (VHE705Q) /CSM/VH/VHE7-A/VHE705Q.Seq.d/
ACAAATATATATATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGT
TTCTAATTACCTATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGA
AAAATTAGATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAA
AATAAAATCATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTT
ATCAAAAGTATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGC
TGGTTCTTTATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATT
TATTGATGAATATATTAAATTAAGAACATCCACAAATAAAGCACACTGTTATCAATCCAC
ATCTCGAATCAATTGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAAC
AGGCATTAGGTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCAC
AATCTGGTAATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAA
ACAATCGTCATTTCCGTCATAGTGTTTXXXXXXXXXXATAACCCACACGTTCGTTATGGT
GCCGCTTTCGCTTTGGGTATTGCATGTGCTGGTACCGGTCAAAGAGATGCTTTGGAAATT
TTAAAATCACTCACCACCGATAGTGTTGGTTACGTTAAACAAGCCGCTTGGATCTCCATG
GNTATGGTATTGATTCAAACCAGTAAAGAGTTGGTACCAGAGGCTGAAACCGCCAGAAAA
TTATTCGCCACTTGTATCAGTGATAAACGTGAGGATTCAATGTCCAAGTTTGGTGCTGTA
TTAGCATTTGGTGTCATTGATGCCGGTGGTAGAAACTCTACCATTCAATTACATTCACCA
AGTGGTCACAAGAATATGAATGCTATCGTTGGTATTGCTGGTTTCCTTCAATTTTGGTAT
TGGTTCCCAATGACTCACTTTATGGGCTTAGCGTTAACTCCAACNTCTATCATTGGTCTC
AACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTGCAGACCATCACTCTTT
GCTTATCCACNTGAAACCAAACCATCCACCACAAGCTCAACCAATAAAATTGAAACAGCC
ATCCTCTCNTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTCCGCTATGAATATGATC
AAGATGTGAAAAGAAAGAAAAAGAGGAGAAAGAAGCCAAANAAAAAGAAGCCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
kyiyihn*nfiqsw*qliqflityhywmkin*n*nhih*kn*ihvlmnfgqklhhlqsik
*nhyqsinnfqnmnlhh*fyqkyiti*visqiqwnmryqlvlylmfyqrvntlkhfyinl
lmniln*EHPQIKHTVINPHLESIVMGMFDRCFKEGSYKQALGIAIEARRLDIIEKAISQ
SGNVNSMLSYCLHICNVSVNNRHFRHSV---

---NPHVRYGAAFALGIACAGTGQRDALEILKSLTTDSVGYVKQAAWISMXMVLIQTSKE
LVPEAETARKLFATCISDKREDSMSKFGAVLAFGVIDAGGRNSTIQLHSPSGHKNMNAIV
GIAGFLQFWYWFPMTHFMGLALTPTSIIGLNKNLEMPVFTFKSNCRPSLFAYPXETKPST
TSSTNKIETAILSYSRKNKLQSSRSAMNMIKM*kerkrgersqxkrsq
Translated Amino Acid sequence (All Frames) 
Frame A:
tniyiyiikisynhgsn*fsf*lpiiig*rsirieiifirkirfmc**ilvrnciifnr*
nkiiisq*tiskt*tciisfiksilqfk*fpkfngicviswffi*cfike*ih*ntfi*i
y**iy*iknihk*stllsihisnql*weclidvsrkdhinrh*vlllkqed*i*lkkqfh
nlvm*ivcslivftfvmfq*tivisvivf---

---ithtfvmvplslwvlhvlvpvkemlwkf*nhsppivlvtlnkplgspwxwy*fkpvk
swyqrlkppenysplvsvinvriqcpslvly*hlvslmpvvetlpfnyihqvvtri*mls
lvllvsfnfgigsq*ltlwa*r*lqxlslvstktwkcqfslsnpiadhhsllihxkpnhp
pqaqpiklkqpssxtverinfkvlvpl*i*srcekkekeekeakxkeak

Frame B:
qiyiyt*lkfhtimvainsvsnylslldedqlelksyslekldscvdefwseiasssidk
ikslsvnkqfpkhelaslvlskvyynlsdfpnsmeyalsagslfnvlskseyietllykf
ideyiklrtstnkahcyqstsrincngnv**mfqgrii*tgirycy*skkiryn*ksnft
iw*ck*yalllsshl*cfskqssfps*c---

---*ptrslwcrfrfgycmcwyrskrcfgnfkithhr*cwlr*tsrldlhgygidsnq*r
vgtrg*nrqkiirhlyq**t*gfnvqvwccisiwch*crw*klyhsitftkwsqeyecyr
wycwfpsilvlvpndslyglsvnsnxyhwsqqklgnasfhfqiqlqtitlclst*nqtih
hklnq*n*nshplxq*ke*tskfsfryeydqdvkrkkkrrkkpxkkkp

Frame C:
kyiyihn*nfiqsw*qliqflityhywmkin*n*nhih*kn*ihvlmnfgqklhhlqsik
*nhyqsinnfqnmnlhh*fyqkyiti*visqiqwnmryqlvlylmfyqrvntlkhfyinl
lmniln*EHPQIKHTVINPHLESIVMGMFDRCFKEGSYKQALGIAIEARRLDIIEKAISQ
SGNVNSMLSYCLHICNVSVNNRHFRHSV---

---NPHVRYGAAFALGIACAGTGQRDALEILKSLTTDSVGYVKQAAWISMXMVLIQTSKE
LVPEAETARKLFATCISDKREDSMSKFGAVLAFGVIDAGGRNSTIQLHSPSGHKNMNAIV
GIAGFLQFWYWFPMTHFMGLALTPTSIIGLNKNLEMPVFTFKSNCRPSLFAYPXETKPST
TSSTNKIETAILSYSRKNKLQSSRSAMNMIKM*kerkrgersqxkrsq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE705 (VHE705Q) /CSM/VH/VHE7-A/VHE705Q.Seq.d/                       2395   0.0
AHD441 (AHD441Q) /CSM/AH/AHD4-B/AHD441Q.Seq.d/                       1225   0.0
AHE327 (AHE327Q) /CSM/AH/AHE3-B/AHE327Q.Seq.d/                       1223   0.0
AHH337 (AHH337Q) /CSM/AH/AHH3-B/AHH337Q.Seq.d/                       1219   0.0
AHE543 (AHE543Q) /CSM/AH/AHE5-B/AHE543Q.Seq.d/                       1219   0.0
AHB255 (AHB255Q) /CSM/AH/AHB2-C/AHB255Q.Seq.d/                       1211   0.0
VHK752 (VHK752Q) /CSM/VH/VHK7-C/VHK752Q.Seq.d/                       1209   0.0
SHA224 (SHA224Q) /CSM/SH/SHA2-A/SHA224Q.Seq.d/                       1209   0.0
AHD110 (AHD110Q) /CSM/AH/AHD1-A/AHD110Q.Seq.d/                       1209   0.0
VHK813 (VHK813Q) /CSM/VH/VHK8-A/VHK813Q.Seq.d/                       1203   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000496|CP000496.1 Pichia stipitis CBS 6054 chromosome 2, complete sequence.    58   7e-04  1
CR341305|CR341305.1 mte1-73F15FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.    40   0.009  2
BB972379|BB972379.1 Plasmodium berghei strain ANKA cDNA clone:OK002089, ookinete 5' EST.    48   0.014  2
EC826598|EC826598.1 SME00003256 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    52   0.044  1
EC821651|EC821651.1 SME00005388 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    52   0.044  1
EC820433|EC820433.1 SME00003343 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    52   0.044  1
BM112152|BM112152.1 EST559688 potato roots Solanum tuberosum cDNA clone cPRO13O10 5' end, mRNA sequence.    36   0.37   3
CD080423|CD080423.2 MA3-9999U-M309-G11-U.B MA3-0001 Schistosoma mansoni cDNA clone MA3-9999U-M309-G11.B, mRNA sequence.    48   0.68   1
BP114566|BP114566.1 Plasmodium berghei strain ANKA cDNA, clone: FCPb3250.    48   0.68   1
BB971525|BB971525.1 Plasmodium berghei strain ANKA cDNA clone:OK001197, ookinete 5' EST.    48   0.68   1
dna update 2007. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX571973_4(BX571973|pid:none) Zebrafish DNA sequence from clone ...   219   2e-55
(Q3TXS7) RecName: Full=26S proteasome non-ATPase regulatory subu...   217   9e-55
D44466_1(D44466|pid:none) Homo sapiens mRNA for proteasome subun...   217   9e-55
(Q8IV79) RecName: Full=26S proteasome non-ATPase regulatory subu...   217   9e-55
BC001053_1(BC001053|pid:none) Homo sapiens proteasome (prosome, ...   217   9e-55
BC151445_1(BC151445|pid:none) Bos taurus proteasome (prosome, ma...   217   9e-55
BC100172_1(BC100172|pid:none) Xenopus laevis hypothetical protei...   216   1e-54
BC014013_1(BC014013|pid:none) Homo sapiens proteasome (prosome, ...   216   1e-54
BC105883_1(BC105883|pid:none) Rattus norvegicus proteasome (pros...   216   2e-54
BC047897_1(BC047897|pid:none) Homo sapiens proteasome (prosome, ...   216   2e-54
protein update 2009. 7. 1
PSORT 

 psg: 0.74  gvh: 0.27  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VHE705 is cyt
5' end seq. ID VHE705F
5' end seq. 
>VHE705F.Seq
ACAAATATATATATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGT
TTCTAATTACCTATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGA
AAAATTAGATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAA
AATAAAATCATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTT
ATCAAAAGTATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGC
TGGTTCTTTATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATT
TATTGATGAATATATTAAATTAAGAACATCCACAAATAAAGCACACTGTTATCAATCCAC
ATCTCGAATCAATTGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAAC
AGGCATTAGGTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCAC
AATCTGGTAATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAA
ACAATCGTCATTTCCGTCATAGTGTTTNNNNNNNNNN
Length of 5' end seq. 637
3' end seq. ID VHE705Z
3' end seq. 
>VHE705Z.Seq
NNNNNNNNNNATAACCCACACGTTCGTTATGGTGCCGCTTTCGCTTTGGGTATTGCATGT
GCTGGTACCGGTCAAAGAGATGCTTTGGAAATTTTAAAATCACTCACCACCGATAGTGTT
GGTTACGTTAAACAAGCCGCTTGGATCTCCATGGNTATGGTATTGATTCAAACCAGTAAA
GAGTTGGTACCAGAGGCTGAAACCGCCAGAAAATTATTCGCCACTTGTATCAGTGATAAA
CGTGAGGATTCAATGTCCAAGTTTGGTGCTGTATTAGCATTTGGTGTCATTGATGCCGGT
GGTAGAAACTCTACCATTCAATTACATTCACCAAGTGGTCACAAGAATATGAATGCTATC
GTTGGTATTGCTGGTTTCCTTCAATTTTGGTATTGGTTCCCAATGACTCACTTTATGGGC
TTAGCGTTAACTCCAACNTCTATCATTGGTCTCAACAAAAACTTGGAAATGCCAGTTTTC
ACTTTCAAATCCAATTGCAGACCATCACTCTTTGCTTATCCACNTGAAACCAAACCATCC
ACCACAAGCTCAACCAATAAAATTGAAACAGCCATCCTCTCNTACAGTAGAAAGAATAAA
CTTCAAAGTTCTCGTTCCGCTATGAATATGATCAAGATGTGAAAAGAAAGAAAAAGAGGA
GAAAGAAGCCAAANAAAAAGAAGCCAAA
Length of 3' end seq. 688
Connected seq. ID VHE705P
Connected seq. 
>VHE705P.Seq
ACAAATATATATATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGT
TTCTAATTACCTATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGA
AAAATTAGATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAA
AATAAAATCATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTT
ATCAAAAGTATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGC
TGGTTCTTTATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATT
TATTGATGAATATATTAAATTAAGAACATCCACAAATAAAGCACACTGTTATCAATCCAC
ATCTCGAATCAATTGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAAC
AGGCATTAGGTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCAC
AATCTGGTAATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAA
ACAATCGTCATTTCCGTCATAGTGTTT----------ATAACCCACACGTTCGTTATGGT
GCCGCTTTCGCTTTGGGTATTGCATGTGCTGGTACCGGTCAAAGAGATGCTTTGGAAATT
TTAAAATCACTCACCACCGATAGTGTTGGTTACGTTAAACAAGCCGCTTGGATCTCCATG
GNTATGGTATTGATTCAAACCAGTAAAGAGTTGGTACCAGAGGCTGAAACCGCCAGAAAA
TTATTCGCCACTTGTATCAGTGATAAACGTGAGGATTCAATGTCCAAGTTTGGTGCTGTA
TTAGCATTTGGTGTCATTGATGCCGGTGGTAGAAACTCTACCATTCAATTACATTCACCA
AGTGGTCACAAGAATATGAATGCTATCGTTGGTATTGCTGGTTTCCTTCAATTTTGGTAT
TGGTTCCCAATGACTCACTTTATGGGCTTAGCGTTAACTCCAACNTCTATCATTGGTCTC
AACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTGCAGACCATCACTCTTT
GCTTATCCACNTGAAACCAAACCATCCACCACAAGCTCAACCAATAAAATTGAAACAGCC
ATCCTCTCNTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTCCGCTATGAATATGATC
AAGATGTGAAAAGAAAGAAAAAGAGGAGAAAGAAGCCAAANAAAAAGAAGCCAAA
Length of connected seq. 1305
Full length Seq ID -
Full length Seq. -
Length of full length seq. -