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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE691
Library VH
(Link to library)
Clone ID VHE691
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16507-1
Original site URL
Representative seq. ID VHE691P
(Link to Original site)
Representative DNA sequence 
>VHE691 (VHE691Q) /CSM/VH/VHE6-D/VHE691Q.Seq.d/
ACACATAAAAATGGTAATAAAAAAATTATTTATATTAATTTTTTGTTTGTTTTTAATTAT
CAATGAAATTAATGGAAAAAAAACAAAACATAAATGATATTAAAAAATCAAAACCAAAAC
TATCATCAACATTATTAAATGTTCATATTGTTGCTCATACTCATGATGATGTTGGTTGGT
TAAAAACAGTTGATGAATATTATTATGGATCAAATATGTCAATTGCATTTGCAGGTGTTC
AATATACTTTGGATACAGCCNTTACCTGTNTATTGGCAAATCCAAAAAGAAAGTTTATTT
ATGTTGAAATTGCATTTTTCCAAAGATGGTGGGATGAACAACCGTACAACAATGCNNAAT
ATTGTTAAGGGTTTGGTNGANAGNGGTCAATTGGAXXXXXXXXXXATNTTCANNCGATTG
GAATTATCAATATCAAGGTGTTTACTCACCATTGNNTTCAGCNTCACNTTTACCAAATGG
TTTAAAGATTCNAGCTGTACAATGGTTAGATAATCNAGATAATACCATNNTTTTACGTAT
TGAAAATATT
sequence update 2002.10.25
Translated Amino Acid sequence 
thkngnkkiiyinflfvfnyq*n*wkknkt*milknqnqnyhqhy*mfilllilmmmlvg
*KQLMNIIMDQICQLHLQVFNILWIQPLPVYWQIQKESLFMLKLHFSKDGGMNNRTTMXN
IVKGLVXXGQL---

---XSXDWNYQYQGVYSPLXSASXLPNGLKIXAVQWLDNXDNTXXLRIENI
Translated Amino Acid sequence (All Frames) 
Frame A:
thkngnkkiiyinflfvfnyq*n*wkknkt*milknqnqnyhqhy*mfilllilmmmlvg
*KQLMNIIMDQICQLHLQVFNILWIQPLPVYWQIQKESLFMLKLHFSKDGGMNNRTTMXN
IVKGLVXXGQL---

---xfxrlelsisrclltixfsxtftkwfkdssctmvr*sr*yhxfty*ky

Frame B:
hikmvikklfilifclfliineingkktkhk*y*kiktktiiniikcsyccsys**cwlv
kns**illwikyvncicrcsiyfgysxylxigkskkkvylc*ncifpkmvg*ttvqqcxi
llrvwxxxvnw---

---XSXDWNYQYQGVYSPLXSASXLPNGLKIXAVQWLDNXDNTXXLRIENI

Frame C:
t*kw**knyly*ffvcf*lsmklmekkqnindikkskpklsstllnvhivahthddvgwl
ktvdeyyygsnmsiafagvqytldtaxtcxlanpkrkfiyveiaffqrwwdeqpynnaxy
c*gfgxxxsig---

---xxxigiinikvfthhxxqxhxyqmv*rfxlyng*iixiipxfyvlki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE691 (VHE691Q) /CSM/VH/VHE6-D/VHE691Q.Seq.d/                        688   0.0
VHM491 (VHM491Q) /CSM/VH/VHM4-D/VHM491Q.Seq.d/                        476   e-133
VHI106 (VHI106Q) /CSM/VH/VHI1-A/VHI106Q.Seq.d/                        476   e-133
SHF429 (SHF429Q) /CSM/SH/SHF4-B/SHF429Q.Seq.d/                        476   e-133
AHE844 (AHE844Q) /CSM/AH/AHE8-B/AHE844Q.Seq.d/                        474   e-133
AHE874 (AHE874Q) /CSM/AH/AHE8-D/AHE874Q.Seq.d/                        474   e-133
VHP767 (VHP767Q) /CSM/VH/VHP7-C/VHP767Q.Seq.d/                        474   e-133
VHP436 (VHP436Q) /CSM/VH/VHP4-B/VHP436Q.Seq.d/                        474   e-133
VHO880 (VHO880Q) /CSM/VH/VHO8-D/VHO880Q.Seq.d/                        474   e-133
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds.   325   e-164  7
CK149800|CK149800.1 CsmgEST00336 Culicoides sonorensis female serum-fed midgut cDNA Library Culicoides sonorensis cDNA, mRNA sequence.   113   4e-22  2
CV682907|CV682907.1 service43_H06_sjs2-16-2B11-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    74   7e-14  2
CV688215|CV688215.1 sjs2-16-2_G01_sjs2-16-2G01-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    74   7e-14  2
CV682854|CV682854.1 service30_G09_sjs2-14-10C09-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    74   7e-14  2
BU798369|BU798369.1 SJF2ADB01 SJF Schistosoma japonicum cDNA, mRNA sequence.    74   8e-14  2
BU804021|BU804021.1 SJFBFG06 SJF Schistosoma japonicum cDNA, mRNA sequence.    74   8e-14  2
BU798139|BU798139.1 SJF2AAF09 SJF Schistosoma japonicum cDNA, mRNA sequence.    74   3e-13  2
CI772524|CI772524.1 Oryza sativa (japonica cultivar-group) cDNA, clone: J10B0068A21T3, 5'end of J100068A21.    84   5e-12  1
CI767734|CI767734.1 Oryza sativa (japonica cultivar-group) cDNA, clone: J10B0051A04T3, 5'end of J100051A04.    84   5e-12  1
dna update 2007. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34098) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   151   1e-37
M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi...   151   5e-36
(Q29451) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   104   2e-21
AK291572_1(AK291572|pid:none) Homo sapiens cDNA FLJ76867 complet...   103   3e-21
JC2200(JC2200)alpha-mannosidase (EC 3.2.1.24) precursor - human       103   3e-21
U05572_1(U05572|pid:none) Human lysosomal alpha-mannosidase (MAN...   103   3e-21
AB209921_1(AB209921|pid:none) Homo sapiens mRNA for mannosidase,...   103   3e-21
AY036155_1(AY036155|pid:none) Cavia porcellus lysosomal alpha-ma...   103   4e-21
(Q8VHC8) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   103   4e-21
AE014134_1973(AE014134|pid:none) Drosophila melanogaster chromos...   102   5e-21
protein update 2009. 7. 1
PSORT 

 psg: 0.85  gvh: 0.46  alm: 0.42  top: 0.37  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal

>> prediction for VHE691 is cyt
5' end seq. ID VHE691F
5' end seq. 
>VHE691F.Seq
ACACATAAAAATGGTAATAAAAAAATTATTTATATTAATTTTTTGTTTGTTTTTAATTAT
CAATGAAATTAATGGAAAAAAAACAAAACATAAATGATATTAAAAAATCAAAACCAAAAC
TATCATCAACATTATTAAATGTTCATATTGTTGCTCATACTCATGATGATGTTGGTTGGT
TAAAAACAGTTGATGAATATTATTATGGATCAAATATGTCAATTGCATTTGCAGGTGTTC
AATATACTTTGGATACAGCCNTTACCTGTNTATTGGCAAATCCAAAAAGAAAGTTTATTT
ATGTTGAAATTGCATTTTTCCAAAGATGGTGGGATGAACAACCGTACAACAATGCNNAAT
ATTGTTAAGGGTTTGGTNGANAGNGGTCAATTGGANNNNNNNNNN
Length of 5' end seq. 405
3' end seq. ID VHE691Z
3' end seq. 
>VHE691Z.Seq
NNNNNNNNNNATNTTCANNCGATTGGAATTATCAATATCAAGGTGTTTACTCACCATTGN
NTTCAGCNTCACNTTTACCAAATGGTTTAAAGATTCNAGCTGTACAATGGTTAGATAATC
NAGATAATACCATNNTTTTACGTATTGAAAATATT
Length of 3' end seq. 155
Connected seq. ID VHE691P
Connected seq. 
>VHE691P.Seq
ACACATAAAAATGGTAATAAAAAAATTATTTATATTAATTTTTTGTTTGTTTTTAATTAT
CAATGAAATTAATGGAAAAAAAACAAAACATAAATGATATTAAAAAATCAAAACCAAAAC
TATCATCAACATTATTAAATGTTCATATTGTTGCTCATACTCATGATGATGTTGGTTGGT
TAAAAACAGTTGATGAATATTATTATGGATCAAATATGTCAATTGCATTTGCAGGTGTTC
AATATACTTTGGATACAGCCNTTACCTGTNTATTGGCAAATCCAAAAAGAAAGTTTATTT
ATGTTGAAATTGCATTTTTCCAAAGATGGTGGGATGAACAACCGTACAACAATGCNNAAT
ATTGTTAAGGGTTTGGTNGANAGNGGTCAATTGGA----------ATNTTCANNCGATTG
GAATTATCAATATCAAGGTGTTTACTCACCATTGNNTTCAGCNTCACNTTTACCAAATGG
TTTAAAGATTCNAGCTGTACAATGGTTAGATAATCNAGATAATACCATNNTTTTACGTAT
TGAAAATATT
Length of connected seq. 540
Full length Seq ID -
Full length Seq. -
Length of full length seq. -