VHE677
Library VH
(Link to library)
Clone ID VHE677
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16200-1
Original site URL
Representative seq. ID VHE677P
(Link to Original site)
Representative DNA sequence
>VHE677 (VHE677Q) /CSM/VH/VHE6-D/VHE677Q.Seq.d/
AATCAAGAGACAATATGCTGATGTTGTTTCATCTCGTGATAAATCGTCGAACAATTAAAG
ACCTTACAAGCCAAGAATGAAGAATTAAGAAACACTGCTGAAGAAGCTGAAGGTCAATTA
GATCGTGCTGAAAGAAGCAAGAAGAAAGCTGAATTCGATTTAGAAGAAGCCGTCAAGAAT
TTGGAAGAAGAAACCGCCAAGAAAGTTAAAGCTGAAAAAGCCATGAAGAAAGCTGAAACT
GACTATCGTTCAACCAAATCTGAATTGGATGATGCCAAGAACGTCTCATCTGAACAATAC
GTTCAAATCAAACGTCTCAATGAAGAACTCTCTGAATTACGTAGTGTCTTGGAAGAAGCT
GATGAACGTTGTAACTCTGCCATCAAAGCAAAGAAAACCGCTGAATCTGCTTTAGAATCA
TTGAAAGATGAAATTGATGCTGCCAACAACGCCAAAGCTAAAGCTGAAAGAAAATCCAAA
GATTTAGAAGTTCGTGTCGCTGAATTAGAAGAATCATTGGAAGATAAATCTGGTACCGTC
AATGTTGAATTCATTCGTAAGAAGGATGCTGAAATCGATGATTTACGTGCTCGTCTCGAC
AGAGAAACTGAAAGTCGTATCAAATCTGATGAAGATAXXXXXXXXXXAACAATCCAAACG
TTTAGTCGAATTAGAATTAGAAGATGCTCGTCGTAACNTCCAAAAAGAAATCGATGCCAA
AGAAATCGCTGAAGATACCAAATCTAACTTCCAACGTGAAATCGTCGAAGCCAAAGGTCG
TCTCGAAGAAGAATCCATCGCTCGTACCAACTCTGATCGTTCAAGAAAGAGACTCGAAGC
TGAAATTGATGCCCTCACTGCTCAAGTTGATGCTGAACAAAAAGCCAAGAATCAACAAAT
CAAAGAAAACAAGAAGATCGAAACCGAACTCAAAGAATACAGAAAGAAATTCGGCGAATC
AGAAAAGACCAAGACCAAAGAATTCCTCGTTGTCGAAAAACTCGAAACAGATTACAAGAG
AGCCAAGAAAGAAGCTGCTGATGAACAACAACAACGTCTTACTGTTGAAAACGATCTCCG
TAAACACNTCAGTGAAATCTCATTACTCAAAGATGCCATTGATAAGTTACAACGTGATCA
CGATAAGACCAAACGTGAATTGGAAACAGAAACTGCCAGCAAAATCGAAATGCAAAGAAA
GATGGCCGTATTTACTTTGGGGTTTCAAAGACTTAAATCAAT
sequence update 2002.10.25
Translated Amino Acid sequence
nqetic*ccfis**IVEQLKTLQAKNEELRNTAEEAEGQLDRAERSKKKAEFDLEEAVKN
LEEETAKKVKAEKAMKKAETDYRSTKSELDDAKNVSSEQYVQIKRLNEELSELRSVLEEA
DERCNSAIKAKKTAESALESLKDEIDAANNAKAKAERKSKDLEVRVAELEESLEDKSGTV
NVEFIRKKDAEIDDLRARLDRETESRIKSDED---

---QSKRLVELELEDARRNXQKEIDAKEIAEDTKSNFQREIVEAKGRLEEESIARTNSDR
SRKRLEAEIDALTAQVDAEQKAKNQQIKENKKIETELKEYRKKFGESEKTKTKEFLVVEK
LETDYKRAKKEAADEQQQRLTVENDLRKHXSEISLLKDAIDKLQRDHDKTKRELETETAS
KIEMQRKMAVFTLGFQRLKS


Translated Amino Acid sequence (All Frames)
Frame A:
nqetic*ccfis**IVEQLKTLQAKNEELRNTAEEAEGQLDRAERSKKKAEFDLEEAVKN
LEEETAKKVKAEKAMKKAETDYRSTKSELDDAKNVSSEQYVQIKRLNEELSELRSVLEEA
DERCNSAIKAKKTAESALESLKDEIDAANNAKAKAERKSKDLEVRVAELEESLEDKSGTV
NVEFIRKKDAEIDDLRARLDRETESRIKSDED---

---nnpnv*sn*n*kmlvvtskkksmpkkslkipnltsnvksskpkvvskknpslvptli
vqerdsklklmpsllklmlnkkprinkskktrrskpnsknternsanqkrprpknsslsk
nskqitreprkkllmnnnnvlllktisvntsvkshyskmplisynvitirpnvnwkqklp
akskckerwpyllwgfkdlnq

Frame B:
ikrqyadvvssrdkssnn*rpykprmkn*etllkklkvn*ivlkearrklnsi*kkpsri
wkkkpprklklkkp*rklkltivqpnlnwmmprtshlnntfksnvsmknslnyvvswkkl
mnvvtlpskqrkplnll*nh*kmklmlpttpklklkenpki*kfvsln*knhwkinlvps
mlnsfvrrmlksmiyvlvsteklkvvsnlmki---

---tiqtfsririrrcss*xpkrnrcqrnr*ryqi*lpt*nrrsqrssrrrihrsyql*s
fkketrs*n*cphcss*c*tksqestnqrkqedrnrtqriqkeirrirkdqdqriprcrk
trnrlqesqersc**ttttsyc*krsp*txq*nlitqrch**vtt*sr*dqt*ignrncq
qnrnakkdgriyfgvskt*in

Frame C:
srdnmlmlfhlvinrrtikdltsqe*rikkhc*rs*rsirsc*kkqees*irfrrsrqef
grrnrqes*s*kshees*n*lsfnqi*ig*cqerli*tirsnqtsq*rtl*it*clgrs*
*tl*lchqskenr*icfriier*n*ccqqrqs*s*kkiqrfrsscr*irriigr*iwyrq
c*ihs*egc*nr*ftcssrqrn*ksyqi**r---

---QSKRLVELELEDARRNXQKEIDAKEIAEDTKSNFQREIVEAKGRLEEESIARTNSDR
SRKRLEAEIDALTAQVDAEQKAKNQQIKENKKIETELKEYRKKFGESEKTKTKEFLVVEK
LETDYKRAKKEAADEQQQRLTVENDLRKHXSEISLLKDAIDKLQRDHDKTKRELETETAS
KIEMQRKMAVFTLGFQRLKS

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE677 (VHE677Q) /CSM/VH/VHE6-D/VHE677Q.Seq.d/ 2010 0.0
VHJ859 (VHJ859Q) /CSM/VH/VHJ8-C/VHJ859Q.Seq.d/ 1104 0.0
SLC646 (SLC646Q) /CSM/SL/SLC6-B/SLC646Q.Seq.d/ 1090 0.0
VHE443 (VHE443Q) /CSM/VH/VHE4-B/VHE443Q.Seq.d/ 1088 0.0
VHL852 (VHL852Q) /CSM/VH/VHL8-C/VHL852Q.Seq.d/ 1080 0.0
SLC107 (SLC107Q) /CSM/SL/SLC1-A/SLC107Q.Seq.d/ 985 0.0
SLE377 (SLE377Q) /CSM/SL/SLE3-D/SLE377Q.Seq.d/ 932 0.0
SLF203 (SLF203Q) /CSM/SL/SLF2-A/SLF203Q.Seq.d/ 910 0.0
VHA117 (VHA117Q) /CSM/VH/VHA1-A/VHA117Q.Seq.d/ 874 0.0
FCL-AA08 (FCL-AA08Q) /CSM/FCL/FCL-AA/FCL-AA08Q.Seq.d/ 852 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M14628|M14628.1 D.discoideum myosin heavy chain gene, complete cds. 874 0.0 5
EC388470|EC388470.1 C06_C06gm2n11_pDNRf_491054 Myzus persicae, line G006, whole aphid library Myzus persicae cDNA clone C06_C06gm2n11_pDNRf_491054, mRNA sequence. 32 1.5 3
ES489816| CG10333-PA [Drosophila melanogaster], mRNA sequence. 36 2.4 2
DY673138|DY673138.1 STRCN72JX cold-stressed Fragaria vesca seedlings cDNA library Fragaria vesca cDNA clone STRCN72, mRNA sequence. 46 2.6 1
EB713018|EB713018.1 LuP12033G09R LuP12 Linum usitatissimum cDNA clone LuP12033G09, mRNA sequence. 46 2.6 1
AC155744|AC155744.1 Bos taurus clone CH240-35P13, *** SEQUENCING IN PROGRESS ***, 26 unordered pieces. 46 2.6 1
AC010081|AC010081.4 Homo sapiens BAC clone RP11-65E7 from Y, complete sequence. 46 2.6 1
DV445479|DV445479.1 CV01016A1D11.f1 CV01-normalized library Manihot esculenta cDNA clone CV01016A1D11.f1, mRNA sequence. 34 5.3 3
AC183158|AC183158.1 Bos taurus clone CH240-102M11, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces. 42 5.5 5
AQ436939|AQ436939.1 HS_5108_A2_B11_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=684 Col=22 Row=C, genomic survey sequence. 32 5.8 3
dna update 2007. 8.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P08799) RecName: Full=Myosin-2 heavy chain; AltName: Full=Myosi... 349 e-102
A26655(A26655;A24728;S00250) myosin heavy chain [similarity] - s... 349 e-102
AF335500_1(AF335500|pid:none) Physarum polycephalum major plasmo... 96 9e-28
A59292(A59292) probable type II myosin heavy chain - slime mold ... 96 5e-22
AF136711_1(AF136711|pid:none) Amoeba proteus myosin heavy chain ... 85 4e-21
DQ411847_1(DQ411847|pid:none) Physarum polycephalum rad50 mRNA, ... 91 7e-17
BC170424_1(BC170424|pid:none) Xenopus laevis nonmuscle myosin II... 64 7e-16
B43402(B43402;A43402) myosin heavy chain-B, neuronal - chicken ... 64 2e-14
M93676_3(M93676|pid:none) Chicken nonmuscle myosin heavy chain (... 64 2e-14
M93676_2(M93676|pid:none) Chicken nonmuscle myosin heavy chain (... 64 2e-14
protein update 2009. 7. 1
PSORT

psg: 0.42 gvh: 0.14 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
24.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for VHE677 is nuc

5' end seq. ID VHE677F
5' end seq.
>VHE677F.Seq
AATCAAGAGACAATATGCTGATGTTGTTTCATCTCGTGATAAATCGTCGAACAATTAAAG
ACCTTACAAGCCAAGAATGAAGAATTAAGAAACACTGCTGAAGAAGCTGAAGGTCAATTA
GATCGTGCTGAAAGAAGCAAGAAGAAAGCTGAATTCGATTTAGAAGAAGCCGTCAAGAAT
TTGGAAGAAGAAACCGCCAAGAAAGTTAAAGCTGAAAAAGCCATGAAGAAAGCTGAAACT
GACTATCGTTCAACCAAATCTGAATTGGATGATGCCAAGAACGTCTCATCTGAACAATAC
GTTCAAATCAAACGTCTCAATGAAGAACTCTCTGAATTACGTAGTGTCTTGGAAGAAGCT
GATGAACGTTGTAACTCTGCCATCAAAGCAAAGAAAACCGCTGAATCTGCTTTAGAATCA
TTGAAAGATGAAATTGATGCTGCCAACAACGCCAAAGCTAAAGCTGAAAGAAAATCCAAA
GATTTAGAAGTTCGTGTCGCTGAATTAGAAGAATCATTGGAAGATAAATCTGGTACCGTC
AATGTTGAATTCATTCGTAAGAAGGATGCTGAAATCGATGATTTACGTGCTCGTCTCGAC
AGAGAAACTGAAAGTCGTATCAAATCTGATGAAGATANNNNNNNNNN
Length of 5' end seq. 647
3' end seq. ID VHE677Z
3' end seq.
>VHE677Z.Seq
NNNNNNNNNNAACAATCCAAACGTTTAGTCGAATTAGAATTAGAAGATGCTCGTCGTAAC
NTCCAAAAAGAAATCGATGCCAAAGAAATCGCTGAAGATACCAAATCTAACTTCCAACGT
GAAATCGTCGAAGCCAAAGGTCGTCTCGAAGAAGAATCCATCGCTCGTACCAACTCTGAT
CGTTCAAGAAAGAGACTCGAAGCTGAAATTGATGCCCTCACTGCTCAAGTTGATGCTGAA
CAAAAAGCCAAGAATCAACAAATCAAAGAAAACAAGAAGATCGAAACCGAACTCAAAGAA
TACAGAAAGAAATTCGGCGAATCAGAAAAGACCAAGACCAAAGAATTCCTCGTTGTCGAA
AAACTCGAAACAGATTACAAGAGAGCCAAGAAAGAAGCTGCTGATGAACAACAACAACGT
CTTACTGTTGAAAACGATCTCCGTAAACACNTCAGTGAAATCTCATTACTCAAAGATGCC
ATTGATAAGTTACAACGTGATCACGATAAGACCAAACGTGAATTGGAAACAGAAACTGCC
AGCAAAATCGAAATGCAAAGAAAGATGGCCGTATTTACTTTGGGGTTTCAAAGACTTAAA
TCAAT
Length of 3' end seq. 605
Connected seq. ID VHE677P
Connected seq.
>VHE677P.Seq
AATCAAGAGACAATATGCTGATGTTGTTTCATCTCGTGATAAATCGTCGAACAATTAAAG
ACCTTACAAGCCAAGAATGAAGAATTAAGAAACACTGCTGAAGAAGCTGAAGGTCAATTA
GATCGTGCTGAAAGAAGCAAGAAGAAAGCTGAATTCGATTTAGAAGAAGCCGTCAAGAAT
TTGGAAGAAGAAACCGCCAAGAAAGTTAAAGCTGAAAAAGCCATGAAGAAAGCTGAAACT
GACTATCGTTCAACCAAATCTGAATTGGATGATGCCAAGAACGTCTCATCTGAACAATAC
GTTCAAATCAAACGTCTCAATGAAGAACTCTCTGAATTACGTAGTGTCTTGGAAGAAGCT
GATGAACGTTGTAACTCTGCCATCAAAGCAAAGAAAACCGCTGAATCTGCTTTAGAATCA
TTGAAAGATGAAATTGATGCTGCCAACAACGCCAAAGCTAAAGCTGAAAGAAAATCCAAA
GATTTAGAAGTTCGTGTCGCTGAATTAGAAGAATCATTGGAAGATAAATCTGGTACCGTC
AATGTTGAATTCATTCGTAAGAAGGATGCTGAAATCGATGATTTACGTGCTCGTCTCGAC
AGAGAAACTGAAAGTCGTATCAAATCTGATGAAGATA----------AACAATCCAAACG
TTTAGTCGAATTAGAATTAGAAGATGCTCGTCGTAACNTCCAAAAAGAAATCGATGCCAA
AGAAATCGCTGAAGATACCAAATCTAACTTCCAACGTGAAATCGTCGAAGCCAAAGGTCG
TCTCGAAGAAGAATCCATCGCTCGTACCAACTCTGATCGTTCAAGAAAGAGACTCGAAGC
TGAAATTGATGCCCTCACTGCTCAAGTTGATGCTGAACAAAAAGCCAAGAATCAACAAAT
CAAAGAAAACAAGAAGATCGAAACCGAACTCAAAGAATACAGAAAGAAATTCGGCGAATC
AGAAAAGACCAAGACCAAAGAATTCCTCGTTGTCGAAAAACTCGAAACAGATTACAAGAG
AGCCAAGAAAGAAGCTGCTGATGAACAACAACAACGTCTTACTGTTGAAAACGATCTCCG
TAAACACNTCAGTGAAATCTCATTACTCAAAGATGCCATTGATAAGTTACAACGTGATCA
CGATAAGACCAAACGTGAATTGGAAACAGAAACTGCCAGCAAAATCGAAATGCAAAGAAA
GATGGCCGTATTTACTTTGGGGTTTCAAAGACTTAAATCAAT
Length of connected seq. 1232
Full length Seq ID -
Full length Seq. -
Length of full length seq. -