VHE675
Library VH
(Link to library)
Clone ID VHE675
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID VHE675P
(Link to Original site)
Representative DNA sequence
>VHE675 (VHE675Q) /CSM/VH/VHE6-D/VHE675Q.Seq.d/
TAAACTAATAGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATAC
ATACAAGCGATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCC
TTCGGGTTTTGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCT
ACTGTGTCACTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACG
GGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCT
ACGGAAGGCAGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAA
TATCAATACCTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATT
AACACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCAT
ATACTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCCGGGTTTA
TGTCATTTACCACTTTCGTGGTTAAATCGACACCGGTATCTCTTTCXXXXXXXXXXTTGT
ACACACCGCCNGTCGATCNTACCGATCGAATGATACGGTAAAGTTAACGGATCGTTTTAT
CTGTGGCAACACTGATATAAATTAAAAGTTATTTAAATCTCATTGTTTAGAGGAAGGAGA
AGTCGTAACAAGGTATCCGTAGGTGAACCTGCGGATGGATCATTTTAGATACCAAACACA
TAAAATGATCTCCAAATTNTCTNTCTTTGTCGAAATCGGACGTGTTGTTGTCATCAACTA
TGGTGAATACATCAACAAAACTGCCGTCATCATTGATGTCTTGGATCAAAACAGAGCTTT
AGTTGCTGGTCCACACAGTGGCGTCGAACGTCACATCATTAACTTCAAATGGATCAATCT
TACTCCATTAAAAGTTAACATCCAAAGAGGTGCCAGAATTAACACCNTCATCGCTGCCAT
CAAAGCTGCTGACCTCGAAACCAAAATTGCTGCCNTATCTGCCGTTAAGAAAATCAACGC
AAGAGCCACCAAATCAAACCAAACTGATTTCGAACGTTTCAAAGCCAACNTCATCAGACG
TAAACTCAACAAGAAAGTTTCAGGTGAAGTTAAGAAATTAGTTAACATTGCCAACAGAGC
TGCTCACAAGAAAGCTGTTGCCCAAAAAGCTGCTGGTCACGTCAAGAAAACTTTATAAAT
AAAATGTTTACTAATAATATAAAATTTTAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
*tnrlsgftfwitavnrg*yiqamgdwqrklsdy*hstnafgfwvipnniadrgfifdks
tvslpyqlsmvrywptmvvtgngelgfdsgega*emattstegsrranysipirgssdnk
yqylsflegn*nehklkllintiggqvwcqqpr*fqlq*hilkllqlkss*LKFKVYPGL
CHLPLSWLNRHRYLF---

---VHTAXRSYRSNDTVKLTDRFICGNTDIN*klfkshcleegevvtryp*vnlrmdhfr
yqthkmiskxsxfveigrvvvinygeyinktaviidvldqnralvagphsgverhiinfk
winltplkvniqrgarintxiaaikaadletkiaaxsavkkinaratksnqtdferfkan
xirrklnkkvsgevkklvnianraahkkavaqkaaghvkktl*ikcllii*nfkn


Translated Amino Acid sequence (All Frames)
Frame A:
*tnrlsgftfwitavnrg*yiqamgdwqrklsdy*hstnafgfwvipnniadrgfifdks
tvslpyqlsmvrywptmvvtgngelgfdsgega*emattstegsrranysipirgssdnk
yqylsflegn*nehklkllintiggqvwcqqpr*fqlq*hilkllqlkss*LKFKVYPGL
CHLPLSWLNRHRYLF---

---lytppvdxtdrmir*s*rivlsvatli*iksylnliv*rkeks*qgirr*tcgwiil
dtkhik*spnxlslsksdvllsstmvntstklpsslmswiktel*llvhtvasnvtslts
ngsillh*kltskevpeltpsslpsklltskpkllpylplrkstqeppnqtklisnvskp
tssdvnstrkfqvklrn*ltlptelltrkllpkkllvtsrklyk*nvy**ykilki

Frame B:
klidfrvlpfg*pq*igantykrwvtgngssaiisilpmpsgfg*yriilqiedlsstsl
lchcpinfrwygiglpwl*rvtgn*gsiperepekwlpllrkaagaqitqsqygevvtin
intypfwraiemntn*ns*ltqlegksgassrgnsssnsiy*sccs*kars*slrftrvy
viyhfrg*idtgisf---

---cthrxsixpie*ygkvngsfylwqh*yklkvi*islfrgrrsrnkvsvgepadgsf*
ipnt*ndlqixxlcrnrtccchqlw*ihqqncrhh*clgskqsfscwstqwrrtshh*lq
mdqsysiks*hpkrcqn*hxhrchqsc*prnqnccxicr*enqrkshqikpn*frtfqsq
xhqt*tqqesfr*s*eis*hcqqscsqesccpkscwsrqenfinkmftnnikf*k

Frame C:
n**tfgfylldnrsksglihtsdg*lateaqrllafyqclrvlgdte*ycrsriylrqvy
cvtalstfdgtvlayhgcng*rgirvrfrrgslrngyhfygrqqarkllnpntgk**q*i
sipilfggqlk*tqiktln*hnwraslvpaaavipapiaytkvvavkklvvev*glpgfm
sfttfvvkstpvsl---

---VHTAXRSYRSNDTVKLTDRFICGNTDIN*klfkshcleegevvtryp*vnlrmdhfr
yqthkmiskxsxfveigrvvvinygeyinktaviidvldqnralvagphsgverhiinfk
winltplkvniqrgarintxiaaikaadletkiaaxsavkkinaratksnqtdferfkan
xirrklnkkvsgevkklvnianraahkkavaqkaaghvkktl*ikcllii*nfkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE675 (VHE675Q) /CSM/VH/VHE6-D/VHE675Q.Seq.d/ 2466 0.0
VHM640 (VHM640Q) /CSM/VH/VHM6-B/VHM640Q.Seq.d/ 1130 0.0
AHG763 (AHG763Q) /CSM/AH/AHG7-C/AHG763Q.Seq.d/ 1130 0.0
VFG146 (VFG146Q) /CSM/VF/VFG1-B/VFG146Q.Seq.d/ 1080 0.0
VFD795 (VFD795Q) /CSM/VF/VFD7-D/VFD795Q.Seq.d/ 1076 0.0
VHI874 (VHI874Q) /CSM/VH/VHI8-D/VHI874Q.Seq.d/ 1074 0.0
CHO248 (CHO248Q) /CSM/CH/CHO2-B/CHO248Q.Seq.d/ 1033 0.0
VHC743 (VHC743Q) /CSM/VH/VHC7-B/VHC743Q.Seq.d/ 1011 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 1055 0.0 3
AM168071|AM168071.1 Dictyostelium discoideum 18S rRNA gene, isolate NC4. 1055 0.0 3
AM168040|AM168040.1 Dictyostelium discoideum 18S rRNA gene, isolate 91HO-9. 1055 0.0 3
K02641|K02641.1 Slime mold (D.discoideum) 17S small subunit ribosomal RNA gene, complete coding sequence. 1047 0.0 3
DQ340385|DQ340385.1 Dictyostelium citrinum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 1045 0.0 3
AM168039|AM168039.1 Dictyostelium discoideum 18S rRNA gene, isolate V34. 1045 0.0 4
X00134|X00134.1 Dictyostelium discoideum 17S rRNA sequence. 1043 0.0 3
AY040329|AY040329.1 Dictyostelium dimigraformum 18S ribosomal RNA gene, partial sequence. 1037 0.0 3
AM168038|AM168038.1 Dictyostelium dimigraformum 18S rRNA gene, isolate AR5b. 1029 0.0 3
AM168033|AM168033.1 Dictyostelium citrinum 18S rRNA gene, isolate OH494. 1029 0.0 3
dna update 2007. 8.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54Z09) RecName: Full=60S ribosomal protein L14; 254 5e-66
EU955338_1(EU955338|pid:none) Zea mays clone 1527557 60 ribosoma... 113 2e-23
CP001142_62(CP001142|pid:none) Phaeodactylum tricornutum CCAP 10... 99 3e-19
BC092249_1(BC092249|pid:none) Mus musculus ribosomal protein L14... 97 1e-18
AK007807_1(AK007807|pid:none) Mus musculus 10 day old male pancr... 97 1e-18
(Q9CR57) RecName: Full=60S ribosomal protein L14; &AK012277_1(A... 97 1e-18
AK010600_1(AK010600|pid:none) Mus musculus ES cells cDNA, RIKEN ... 97 1e-18
(P50914) RecName: Full=60S ribosomal protein L14; AltName: Full=... 97 2e-18
AY891859_1(AY891859|pid:none) Synthetic construct Homo sapiens c... 97 2e-18
BC029036_1(BC029036|pid:none) Homo sapiens ribosomal protein L14... 97 2e-18
protein update 2009. 7. 1
PSORT

psg: 0.85 gvh: 0.49 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: mitochondrial
36.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for VHE675 is mit

5' end seq. ID VHE675F
5' end seq.
>VHE675F.Seq
TAAACTAATAGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATAC
ATACAAGCGATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCC
TTCGGGTTTTGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCT
ACTGTGTCACTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACG
GGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCT
ACGGAAGGCAGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAA
TATCAATACCTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATT
AACACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCAT
ATACTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCCGGGTTTA
TGTCATTTACCACTTTCGTGGTTAAATCGACACCGGTATCTCTTTCNNNNNNNNNN
Length of 5' end seq. 596
3' end seq. ID VHE675Z
3' end seq.
>VHE675Z.Seq
NNNNNNNNNNTTGTACACACCGCCNGTCGATCNTACCGATCGAATGATACGGTAAAGTTA
ACGGATCGTTTTATCTGTGGCAACACTGATATAAATTAAAAGTTATTTAAATCTCATTGT
TTAGAGGAAGGAGAAGTCGTAACAAGGTATCCGTAGGTGAACCTGCGGATGGATCATTTT
AGATACCAAACACATAAAATGATCTCCAAATTNTCTNTCTTTGTCGAAATCGGACGTGTT
GTTGTCATCAACTATGGTGAATACATCAACAAAACTGCCGTCATCATTGATGTCTTGGAT
CAAAACAGAGCTTTAGTTGCTGGTCCACACAGTGGCGTCGAACGTCACATCATTAACTTC
AAATGGATCAATCTTACTCCATTAAAAGTTAACATCCAAAGAGGTGCCAGAATTAACACC
NTCATCGCTGCCATCAAAGCTGCTGACCTCGAAACCAAAATTGCTGCCNTATCTGCCGTT
AAGAAAATCAACGCAAGAGCCACCAAATCAAACCAAACTGATTTCGAACGTTTCAAAGCC
AACNTCATCAGACGTAAACTCAACAAGAAAGTTTCAGGTGAAGTTAAGAAATTAGTTAAC
ATTGCCAACAGAGCTGCTCACAAGAAAGCTGTTGCCCAAAAAGCTGCTGGTCACGTCAAG
AAAACTTTATAAATAAAATGTTTACTAATAATATAAAATTTTAAAAATA
Length of 3' end seq. 709
Connected seq. ID VHE675P
Connected seq.
>VHE675P.Seq
TAAACTAATAGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATAC
ATACAAGCGATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCC
TTCGGGTTTTGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCT
ACTGTGTCACTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACG
GGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCT
ACGGAAGGCAGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAA
TATCAATACCTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATT
AACACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCAT
ATACTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCCGGGTTTA
TGTCATTTACCACTTTCGTGGTTAAATCGACACCGGTATCTCTTTC----------TTGT
ACACACCGCCNGTCGATCNTACCGATCGAATGATACGGTAAAGTTAACGGATCGTTTTAT
CTGTGGCAACACTGATATAAATTAAAAGTTATTTAAATCTCATTGTTTAGAGGAAGGAGA
AGTCGTAACAAGGTATCCGTAGGTGAACCTGCGGATGGATCATTTTAGATACCAAACACA
TAAAATGATCTCCAAATTNTCTNTCTTTGTCGAAATCGGACGTGTTGTTGTCATCAACTA
TGGTGAATACATCAACAAAACTGCCGTCATCATTGATGTCTTGGATCAAAACAGAGCTTT
AGTTGCTGGTCCACACAGTGGCGTCGAACGTCACATCATTAACTTCAAATGGATCAATCT
TACTCCATTAAAAGTTAACATCCAAAGAGGTGCCAGAATTAACACCNTCATCGCTGCCAT
CAAAGCTGCTGACCTCGAAACCAAAATTGCTGCCNTATCTGCCGTTAAGAAAATCAACGC
AAGAGCCACCAAATCAAACCAAACTGATTTCGAACGTTTCAAAGCCAACNTCATCAGACG
TAAACTCAACAAGAAAGTTTCAGGTGAAGTTAAGAAATTAGTTAACATTGCCAACAGAGC
TGCTCACAAGAAAGCTGTTGCCCAAAAAGCTGCTGGTCACGTCAAGAAAACTTTATAAAT
AAAATGTTTACTAATAATATAAAATTTTAAAAATA
Length of connected seq. 1285
Full length Seq ID -
Full length Seq. -
Length of full length seq. -