>VHE651 (VHE651Q) /CSM/VH/VHE6-C/VHE651Q.Seq.d/
XXXXXXXXXXCCATTTAGTAGATTTATTATACAATCATTTAGTTTATTATACTACACAAT
GTAAACAGATTATATCGAATGGTTACAATACTGATAGAAATGCAATGAATGTAGATGGTG
GTGGTGGAGGAAGTGATAAACATCCATATAAACCNCCGCAAGCTTGTGATGATTATACGT
TTGCTGATAGAGTCAGTCATATGGAACAAATTCAAGATTATTTAAATTTTATTCGTTTCT
TATATGACAAGTCAAGTTTATCCNTTACTAAACAACATATCGATATTTGGTGGAATATCT
TTGTTCTAGAACCAGTATCACANTCTGATAGAACTCACTTTTTCAATTGGGTCATTGACC
ATTTAAGTTTGGATGAACATCAAGTTTTGTATTTTATAAACAAATTCCAAACNTTAACTT
TTACAGATTTAGATATTACCGGTTTCGAATTTTATAAATTTTGTTTTAATTTAATTAAAT
NTCATGATTATAATAATAATAAT

---HLVDLLYNHLVYYTTQCKQIISNGYNTDRNAMNVDGGGGGSDKHPYKPPQACDDYTF
ADRVSHMEQIQDYLNFIRFLYDKSSLSXTKQHIDIWWNIFVLEPVSXSDRTHFFNWVIDH
LSLDEHQVLYFINKFQTLTFTDLDITGFEFYKFCFNLIKXHDYNNNN

Frame A:
---HLVDLLYNHLVYYTTQCKQIISNGYNTDRNAMNVDGGGGGSDKHPYKPPQACDDYTF
ADRVSHMEQIQDYLNFIRFLYDKSSLSXTKQHIDIWWNIFVLEPVSXSDRTHFFNWVIDH
LSLDEHQVLYFINKFQTLTFTDLDITGFEFYKFCFNLIKXHDYNNNN


Frame B:
---i**iyytii*fiilhnvnrlyrmvtiliemq*m*mvvveevinihinxrklvmiirl
liesviwnkfkii*ilfvsymtsqvypllnnisifggislf*nqyhxlieltfsigslti
*vwmnikfcil*tnskx*llqi*ilpvsnfinfvli*lnxmiiiii


Frame C:
---fsrfiiqsfsllyytm*tdyiewlqy**kcnecrwwwwrk**tsi*txasl**lyvc
**sqsygtnsrlfkfysfli*qvkfixy*ttyrylveylcsrtsitx**nslfqlgh*pf
kfg*tssfvfykqipnxnfyrfryyrfril*ilf*fn*xs*l****

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE651 (VHE651Q) /CSM/VH/VHE6-C/VHE651Q.Seq.d/                        844   0.0
CFG789 (CFG789Q) /CSM/CF/CFG7-D/CFG789Q.Seq.d/                        844   0.0
VHM435 (VHM435Q) /CSM/VH/VHM4-B/VHM435Q.Seq.d/                         36   0.49
VFO846 (VFO846Q) /CSM/VF/VFO8-B/VFO846Q.Seq.d/                         36   0.49
VFN422 (VFN422Q) /CSM/VF/VFN4-A/VFN422Q.Seq.d/                         36   0.49
VFM633 (VFM633Q) /CSM/VF/VFM6-B/VFM633Q.Seq.d/                         36   0.49
VFM540 (VFM540Q) /CSM/VF/VFM5-B/VFM540Q.Seq.d/                         36   0.49
VFJ561 (VFJ561Q) /CSM/VF/VFJ5-C/VFJ561Q.Seq.d/                         36   0.49
VFJ232 (VFJ232Q) /CSM/VF/VFJ2-B/VFJ232Q.Seq.d/                         36   0.49
VFJ209 (VFJ209Q) /CSM/VF/VFJ2-A/VFJ209Q.Seq.d/                         36   0.49

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DY830034|DY830034.1 CTOY564.b1_H21.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNAclone CTOY564, mRNA sequence.    48   0.25   1
BV470569|BV470569.1 G591P624056FA8.T0 Clint Pan troglodytes verus STS genomic, sequence tagged site.    48   0.25   1
AL121870|AL121870.9 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3. Contains an STS and GSSs.    48   0.25   1
AC119350|AC119350.5 Rattus norvegicus clone CH230-433K7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.65   4
CR932377|CR932377.17 Zebrafish DNA sequence from clone DKEY-238H15 in linkage group 13.    40   0.70   2
EV426407|EV426407.1 210759936 NVP Nasonia vitripennis cDNA clone 200O9 3', mRNA sequence.    34   0.72   2
BB646842|BB646842.1 Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930044N01, 5' end partial sequence.    46   1.0    1
EB936737|EB936737.1 9915745 ZF31XL Danio rerio cDNA clone 3546416, mRNA sequence.    46   1.0    1
EB933259|EB933259.1 9919579 ZF31XL Danio rerio cDNA clone 3545647, mRNA sequence.    46   1.0    1
AC172901|AC172901.3 Bos taurus clone CH240-483L12, *** SEQUENCING IN PROGRESS ***, 26 unordered pieces.    46   1.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC172601_1(BC172601|pid:none) Synthetic construct Mus musculus c...    38   0.12
AL669967_1(AL669967|pid:none) Mouse DNA sequence from clone RP23...    36   0.45
(P70398) RecName: Full=Probable ubiquitin carboxyl-terminal hydr...    36   0.45
DQ086491_1(DQ086491|pid:none) Mus musculus ubiquitin specific pr...    36   0.45
FJ627275_1(FJ627275|pid:none) Bos taurus Usp9y mRNA, complete cds.     34   1.7
FJ195366_1(FJ195366|pid:none) Bos taurus Y-linked ubiquitin-spec...    34   1.7
FJ532267_1(FJ532267|pid:none) Gorilla gorilla isolate PR00573 ub...    34   1.7
Y13619_1(Y13619|pid:none) Homo sapiens mRNA for DFFRY protein, r...    34   1.7
BX545856_3(BX545856|pid:none) Zebrafish DNA sequence from clone ...    34   1.7
(Q93008) RecName: Full=Probable ubiquitin carboxyl-terminal hydr...    34   1.7

 psg: 0.75  gvh: 0.45  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHE651 is cyt

>VHE651Z.Seq
NNNNNNNNNNCCATTTAGTAGATTTATTATACAATCATTTAGTTTATTATACTACACAAT
GTAAACAGATTATATCGAATGGTTACAATACTGATAGAAATGCAATGAATGTAGATGGTG
GTGGTGGAGGAAGTGATAAACATCCATATAAACCNCCGCAAGCTTGTGATGATTATACGT
TTGCTGATAGAGTCAGTCATATGGAACAAATTCAAGATTATTTAAATTTTATTCGTTTCT
TATATGACAAGTCAAGTTTATCCNTTACTAAACAACATATCGATATTTGGTGGAATATCT
TTGTTCTAGAACCAGTATCACANTCTGATAGAACTCACTTTTTCAATTGGGTCATTGACC
ATTTAAGTTTGGATGAACATCAAGTTTTGTATTTTATAAACAAATTCCAAACNTTAACTT
TTACAGATTTAGATATTACCGGTTTCGAATTTTATAAATTTTGTTTTAATTTAATTAAAT
NTCATGATTATAATAATAATAAT