>VHE650 (VHE650Q) /CSM/VH/VHE6-C/VHE650Q.Seq.d/
ATTGAAACCTTCATTTAATATTATGTAATAAATAATGACGGATAATAAACAATCCTCAAT
ACCTTCTTCCCCACCTATTGTGGTACCAACAACTACAACAGATATTAATTCATTTACATC
TTCTCCAACCTCAACACAAGGTTCAATGACACCAAACCCAAATGTTATTATACCAACACA
ACCACCAACACAACCAATAACTCAATCAAATTCAACATCTACTCCTTCTTCTTCTTCTTC
ATCTTCAAATAAAACATTTGAATCAATATTAGAATCATGGAAATTATTTAATATTGATAA
AAAAAAGAATGAATTTGGTGATAATGTAACACAAATTGGTGCATTAAAAGAAGATTGTCT
AAAGAGTAGAAAAGTATTAGCAAAACAAACACAAGATTTTAAAAAGTTTACAGATGATGA
AAAGATTAAACAATTTGGATCACTTTTAAAACTTTATCAAGATGAAGTTGATAAACTCAC
CAAACGTAGTAAATTCACCGAGACAGTATTCCTTGGTATGTATAAGGATTTGAATGAGAT
ATCAGATCCTGTACCTGCATTGAGTGCAGCATTGGAGGAATGCTCAAAAGTTGATCAAAC
CACTAAATTAXXXXXXXXXXTAATAAGATCATCAAATGAATCATTTTCAAATTCACTTCA
ACAAGTTGGTGCTGGTAATATTGTACAATCAAAAGATGACAAAATGTTAGATATTGTAAT
AAGTCAACGTGATAGATTTAAAACAAAGATTGTAGAATTAGAGAGTGATAAAAGTAAACT
TGAAAAACAACTAGATTCATGTCGTCAAGAATTATCATCATTAAAAACTGATAATATTAA
ATTATATGAAAAAATTAGATTTTTACAAAGTTATGATAAAAATAAATCAGGTGGTGGTGG
CATCAACAATGCCAATAAAGAAATTCATAGTAAAAGAAATAATAGTGGTTTTGAAAAATC
ATATGATGTTGAAAGAGGTTTAGATATTCCTTCNTCTTCCTCATCATCATCATCTCAAGG
TGGACNTGAAACTGAAGAGAAATATGGTAAACTTTATGAAGAATCAATAAATCCATTTTT
ATCATTCAATAAAAAAGAGAAATATCGAAGATATAGAGAGATGAATACAGCTGAAAGGGT
GATTTTAAATGGTTCAAGATTTTTCCTATCAAATAAATACAGTCGTCTATTCCTTTTCAT
ATATTCTGTCNTACTTCATCTTATGGTATTTCTTACACTCTATAGATTAGCAACAATCAC
AANTGAACAACACGAAATGGGTTTTGGTAATANACATCAAACTCCTCCACTACCTCAAAA
AGATA

lkpsfnim**IMTDNKQSSIPSSPPIVVPTTTTDINSFTSSPTSTQGSMTPNPNVIIPTQ
PPTQPITQSNSTSTPSSSSSSSNKTFESILESWKLFNIDKKKNEFGDNVTQIGALKEDCL
KSRKVLAKQTQDFKKFTDDEKIKQFGSLLKLYQDEVDKLTKRSKFTETVFLGMYKDLNEI
SDPVPALSAALEECSKVDQTTKL---

---IRSSNESFSNSLQQVGAGNIVQSKDDKMLDIVISQRDRFKTKIVELESDKSKLEKQL
DSCRQELSSLKTDNIKLYEKIRFLQSYDKNKSGGGGINNANKEIHSKRNNSGFEKSYDVE
RGLDIPSSSSSSSSQGGXETEEKYGKLYEESINPFLSFNKKEKYRRYREMNTAERVILNG
SRFFLSNKYSRLFLFIYSVXLHLMVFLTLYRLATITXEQHEMGFGNXHQTPPLPQKD

Frame A:
ietfi*yyvinndg**tilntffptycgtnnynry*fiyifsnlntrfndtkpkcyytnt
ttnttnnsikfniysfffffifk*ni*inirimeii*y**kke*iw**cntnwcikrrls
ke*ksisktntrf*kvyr**kd*tiwitfktlsr*s**thqt**ihrdsipwyv*gfe*d
irsctciecsiggmlks*snh*i---

---**dhqmnhfqihfnklvlvilynqkmtkc*il**vnvidlkqrl*n*rvikvnlknn
*ihvvknyhh*kliilnymkkldfykvmikinqvvvastmpikkfivkeiivvlknhmml
kev*iflxlphhhhlkvdxklkrnmvnfmknq*ihfyhsikkrniedier*iqlkg*f*m
vqdfsyqintvvysfsyilsyfilwyflhsid*qqsqxnntkwvlvixikllhylkki

Frame B:
lkpsfnim**IMTDNKQSSIPSSPPIVVPTTTTDINSFTSSPTSTQGSMTPNPNVIIPTQ
PPTQPITQSNSTSTPSSSSSSSNKTFESILESWKLFNIDKKKNEFGDNVTQIGALKEDCL
KSRKVLAKQTQDFKKFTDDEKIKQFGSLLKLYQDEVDKLTKRSKFTETVFLGMYKDLNEI
SDPVPALSAALEECSKVDQTTKL---

---nkiik*iifkftstswcw*yctikr*qnvrycnkst**i*nkdcrire**k*t*ktt
rfmssriiiikn**y*ii*kn*iftkl**k*irwwwhqqcq*rns**kk**wf*kii*c*
krfrysfxfliiiisrwt*n*reiw*tl*rinksifiiq*kreiski*rdeys*kgdfkw
fkifpik*iqssipfhifcxtssygisytl*isnnhx*ttrngfw*xtsnssttskr

Frame C:
*nlhlilcnk**riinnpqyllphllwyqqlqqilihlhllqpqhkvq*hqtqmllyqhn
hqhnq*lnqiqhlllllllhlqikhlnqy*nhgnylilikkrmnlvim*hklvh*kkiv*
rveky*qnkhkilkslqmmkrlnnldhf*nfikmklinspnvvnsprqyslvciri*mry
qilylh*vqhwrnaqklikpln---

---IRSSNESFSNSLQQVGAGNIVQSKDDKMLDIVISQRDRFKTKIVELESDKSKLEKQL
DSCRQELSSLKTDNIKLYEKIRFLQSYDKNKSGGGGINNANKEIHSKRNNSGFEKSYDVE
RGLDIPSSSSSSSSQGGXETEEKYGKLYEESINPFLSFNKKEKYRRYREMNTAERVILNG
SRFFLSNKYSRLFLFIYSVXLHLMVFLTLYRLATITXEQHEMGFGNXHQTPPLPQKD

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE650 (VHE650Q) /CSM/VH/VHE6-C/VHE650Q.Seq.d/                       2002   0.0
AHQ685 (AHQ685Q) /CSM/AH/AHQ6-D/AHQ685Q.Seq.d/                       1362   0.0
VFF614 (VFF614Q) /CSM/VF/VFF6-A/VFF614Q.Seq.d/                       1360   0.0
CHM784 (CHM784Q) /CSM/CH/CHM7-D/CHM784Q.Seq.d/                       1360   0.0
CHD173 (CHD173Q) /CSM/CH/CHD1-D/CHD173Q.Seq.d/                       1360   0.0
AHC674 (AHC674Q) /CSM/AH/AHC6-D/AHC674Q.Seq.d/                       1360   0.0
AFC835 (AFC835Q) /CSM/AF/AFC8-B/AFC835Q.Seq.d/                       1360   0.0
VHC862 (VHC862Q) /CSM/VH/VHC8-C/VHC862Q.Seq.d/                       1358   0.0
SHJ639 (SHJ639Q) /CSM/SH/SHJ6-B/SHJ639Q.Seq.d/                       1356   0.0
SFH402 (SFH402Q) /CSM/SF/SFH4-A/SFH402Q.Seq.d/                       1356   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB239909|AB239909.1 Dictyostelium discoideum scdA gene for similar to CCAAT displacement protein, complete cds.   839   0.0    5
AZ544736|AZ544736.1 ENTGB72TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.001  3
AZ683494|AZ683494.1 ENTHA50TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.001  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   0.008  16
EL567056|EL567056.1 Physarum10600 Physarum polycephalum starvation stress library Physarum polycephalum cDNA clone PpolyN1d101a11.t7, mRNA sequence.    52   0.044  1
AZ678945|AZ678945.1 ENTMM27TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.061  2
AZ677245|AZ677245.1 ENTJB41TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.063  2
BJ868514|BJ868514.1 Marchantia polymorpha cDNA clone:lwb41e01, 5' end.    50   0.17   1
BJ868176|BJ868176.1 Marchantia polymorpha cDNA clone:lwb40e01, 5' end.    50   0.17   1
CE091352|CE091352.1 tigr-gss-dog-17000359492759 Dog Library Canis familiaris genomic, genomic survey sequence.    50   0.17   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB239909_1(AB239909|pid:none) Dictyostelium discoideum scdA gene...   436   e-121
AB026658_20(AB026658|pid:none) Arabidopsis thaliana genomic DNA,...   125   3e-27
AM269982_54(AM269982|pid:none) Aspergillus niger contig An01c035...   122   2e-26
BC079570_1(BC079570|pid:none) Mus musculus cut-like homeobox 1, ...   114   8e-24
BC054370_1(BC054370|pid:none) Mus musculus cut-like homeobox 1, ...   114   8e-24
U66249_1(U66249|pid:none) Mus musculus Cut alternatively spliced...   113   2e-23
AM920431_1282(AM920431|pid:none) Penicillium chrysogenum Wiscons...   113   2e-23
GN102960_1(GN102960|pid:none) Sequence 7741 from Patent WO200903...   112   2e-23
CR857295_1(CR857295|pid:none) Pongo abelii mRNA; cDNA DKFZp469C1...   112   4e-23
BC075748_1(BC075748|pid:none) Danio rerio cut-like 1 (Drosophila...   111   7e-23

 psg: 0.89  gvh: 0.50  alm: 0.27  top: 0.43  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.01  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHE650 is cyt

>VHE650F.Seq
ATTGAAACCTTCATTTAATATTATGTAATAAATAATGACGGATAATAAACAATCCTCAAT
ACCTTCTTCCCCACCTATTGTGGTACCAACAACTACAACAGATATTAATTCATTTACATC
TTCTCCAACCTCAACACAAGGTTCAATGACACCAAACCCAAATGTTATTATACCAACACA
ACCACCAACACAACCAATAACTCAATCAAATTCAACATCTACTCCTTCTTCTTCTTCTTC
ATCTTCAAATAAAACATTTGAATCAATATTAGAATCATGGAAATTATTTAATATTGATAA
AAAAAAGAATGAATTTGGTGATAATGTAACACAAATTGGTGCATTAAAAGAAGATTGTCT
AAAGAGTAGAAAAGTATTAGCAAAACAAACACAAGATTTTAAAAAGTTTACAGATGATGA
AAAGATTAAACAATTTGGATCACTTTTAAAACTTTATCAAGATGAAGTTGATAAACTCAC
CAAACGTAGTAAATTCACCGAGACAGTATTCCTTGGTATGTATAAGGATTTGAATGAGAT
ATCAGATCCTGTACCTGCATTGAGTGCAGCATTGGAGGAATGCTCAAAAGTTGATCAAAC
CACTAAATTANNNNNNNNNN

>VHE650Z.Seq
NNNNNNNNNNTAATAAGATCATCAAATGAATCATTTTCAAATTCACTTCAACAAGTTGGT
GCTGGTAATATTGTACAATCAAAAGATGACAAAATGTTAGATATTGTAATAAGTCAACGT
GATAGATTTAAAACAAAGATTGTAGAATTAGAGAGTGATAAAAGTAAACTTGAAAAACAA
CTAGATTCATGTCGTCAAGAATTATCATCATTAAAAACTGATAATATTAAATTATATGAA
AAAATTAGATTTTTACAAAGTTATGATAAAAATAAATCAGGTGGTGGTGGCATCAACAAT
GCCAATAAAGAAATTCATAGTAAAAGAAATAATAGTGGTTTTGAAAAATCATATGATGTT
GAAAGAGGTTTAGATATTCCTTCNTCTTCCTCATCATCATCATCTCAAGGTGGACNTGAA
ACTGAAGAGAAATATGGTAAACTTTATGAAGAATCAATAAATCCATTTTTATCATTCAAT
AAAAAAGAGAAATATCGAAGATATAGAGAGATGAATACAGCTGAAAGGGTGATTTTAAAT
GGTTCAAGATTTTTCCTATCAAATAAATACAGTCGTCTATTCCTTTTCATATATTCTGTC
NTACTTCATCTTATGGTATTTCTTACACTCTATAGATTAGCAACAATCACAANTGAACAA
CACGAAATGGGTTTTGGTAATANACATCAAACTCCTCCACTACCTCAAAAAGATA

>VHE650P.Seq
ATTGAAACCTTCATTTAATATTATGTAATAAATAATGACGGATAATAAACAATCCTCAAT
ACCTTCTTCCCCACCTATTGTGGTACCAACAACTACAACAGATATTAATTCATTTACATC
TTCTCCAACCTCAACACAAGGTTCAATGACACCAAACCCAAATGTTATTATACCAACACA
ACCACCAACACAACCAATAACTCAATCAAATTCAACATCTACTCCTTCTTCTTCTTCTTC
ATCTTCAAATAAAACATTTGAATCAATATTAGAATCATGGAAATTATTTAATATTGATAA
AAAAAAGAATGAATTTGGTGATAATGTAACACAAATTGGTGCATTAAAAGAAGATTGTCT
AAAGAGTAGAAAAGTATTAGCAAAACAAACACAAGATTTTAAAAAGTTTACAGATGATGA
AAAGATTAAACAATTTGGATCACTTTTAAAACTTTATCAAGATGAAGTTGATAAACTCAC
CAAACGTAGTAAATTCACCGAGACAGTATTCCTTGGTATGTATAAGGATTTGAATGAGAT
ATCAGATCCTGTACCTGCATTGAGTGCAGCATTGGAGGAATGCTCAAAAGTTGATCAAAC
CACTAAATTA----------TAATAAGATCATCAAATGAATCATTTTCAAATTCACTTCA
ACAAGTTGGTGCTGGTAATATTGTACAATCAAAAGATGACAAAATGTTAGATATTGTAAT
AAGTCAACGTGATAGATTTAAAACAAAGATTGTAGAATTAGAGAGTGATAAAAGTAAACT
TGAAAAACAACTAGATTCATGTCGTCAAGAATTATCATCATTAAAAACTGATAATATTAA
ATTATATGAAAAAATTAGATTTTTACAAAGTTATGATAAAAATAAATCAGGTGGTGGTGG
CATCAACAATGCCAATAAAGAAATTCATAGTAAAAGAAATAATAGTGGTTTTGAAAAATC
ATATGATGTTGAAAGAGGTTTAGATATTCCTTCNTCTTCCTCATCATCATCATCTCAAGG
TGGACNTGAAACTGAAGAGAAATATGGTAAACTTTATGAAGAATCAATAAATCCATTTTT
ATCATTCAATAAAAAAGAGAAATATCGAAGATATAGAGAGATGAATACAGCTGAAAGGGT
GATTTTAAATGGTTCAAGATTTTTCCTATCAAATAAATACAGTCGTCTATTCCTTTTCAT
ATATTCTGTCNTACTTCATCTTATGGTATTTCTTACACTCTATAGATTAGCAACAATCAC
AANTGAACAACACGAAATGGGTTTTGGTAATANACATCAAACTCCTCCACTACCTCAAAA
AGATA