VHE642
Library VH
(Link to library)
Clone ID VHE642
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHE642P
(Link to Original site)
Representative DNA sequence
>VHE642 (VHE642Q) /CSM/VH/VHE6-B/VHE642Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGANATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
XXXXXXXXXXTATATGCTGATGAATTAACTGCNTCCCCAACTATCTTAGAACCNATCTAC
TTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTANTCTGTACTCNATCGT
CGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTATCTGTCAAA
GCTCATTTACCAGTATTAGAATCTTTCGGTTTCNCCGATGATTTACGTTCCCNCNCTGCC
GGTCAAGCTTTCCCNCAATGTGTCTTCGATCNNTGGGCTTCNATTGGTGTTGTCAACAAA
GATAAGAAAGCCTCTGAAGTCGCTTTAGCCTCCAGAAAGAGAAAAGGTTNAGCNCCNGAA
ATCC
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMXYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF-
--

---YADELTASPTILEPIYLVEITAPENAIGGIXSVLXRRRGIVIGEERRIGSPLLSVKA
HLPVLESFGFXDDLRSXXAGQAFPQCVFDXWASIGVVNKDKKASEVALASRKRKGXAPEI


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*xichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
---

---ymlmn*lxpqls*nxst**kllpqktllvvfxlysivvevlllvknvvsvphyylsk
liyqy*nlsvspmiyvpxlpvklsxnvssixglxlvlstkirkplksl*pperekvxxxk
s

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yxiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*f-
--

---ic**incxpnylrtxllsrnycprkrywwylxctxss*rycyw*rtsyrfpiiicqs
sftsirifrfxr*ftfpxcrssfpxmclrsxgfxwccqqr*esl*srfslqkekrxsxxn

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMXYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF-
--

---YADELTASPTILEPIYLVEITAPENAIGGIXSVLXRRRGIVIGEERRIGSPLLSVKA
HLPVLESFGFXDDLRSXXAGQAFPQCVFDXWASIGVVNKDKKASEVALASRKRKGXAPEI

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 668 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 668 0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 668 0.0
VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 668 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 668 0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 668 0.0
VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/ 668 0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 668 0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 668 0.0
VHQ469 (VHQ469Q) /CSM/VH/VHQ4-C/VHQ469Q.Seq.d/ 668 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 666 0.0 2
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds. 78 1e-29 5
Y09664|Y09664.1 C.albicans EFT2 gene. 78 1e-28 5
AF107289|AF107289.1 Candida tropicalis elongation factor 2 (EFT2) gene, partial cds. 62 1e-26 6
AF107291|AF107291.1 Candida parapsilosis elongation factor 2 (EFT2) gene, partial cds. 48 1e-22 6
AR550598|AR550598.1 Sequence 5729 from patent US 6747137. 66 1e-17 3
CO080174|CO080174.1 GR__Ea43H12.r GR__Ea Gossypium raimondii cDNA clone GR__Ea43H12 3', mRNA sequence. 58 6e-17 4
EL513430|EL513430.1 CHUX465.b1_A21.ab1 CHU(XYZ) puzzle sunflower Helianthus paradoxus cDNA clone CHUX465, mRNA sequence. 72 2e-16 4
EL476245|EL476245.1 CHUL4181.b1_J14.ab1 CHU(LMS) puzzle sunflower Helianthus paradoxus cDNA clone CHUL4181, mRNA sequence. 72 2e-16 4
DY941362|DY941362.1 CHPX9185.b1_B18.ab1 CHP(XYZ) plains sunflower Helianthus petiolaris cDNA clone CHPX9185, mRNA sequence. 72 2e-16 4
dna update 2007. 8.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK319019_1(AK319019|pid:none) Arabidopsis thaliana AT1G56070 mRN... 87 1e-33
AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 143 6e-33
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 142 8e-33
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 140 4e-32
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 139 1e-31
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 137 3e-31
AY144924_1(AY144924|pid:none) Saccharomyces castellii clone Cont... 136 6e-31
CP000881_15(CP000881|pid:none) Hemiselmis andersenii chromosome ... 136 6e-31
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 136 7e-31
AP005845_16(AP005845|pid:none) Oryza sativa Japonica Group genom... 135 2e-30
protein update 2009. 6.30
PSORT

psg: 0.71 gvh: 0.38 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VHE642 is cyt

5' end seq. ID VHE642F
5' end seq.
>VHE642F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGANATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
NNNNNNNNNN
Length of 5' end seq. 370
3' end seq. ID VHE642Z
3' end seq.
>VHE642Z.Seq
NNNNNNNNNNTATATGCTGATGAATTAACTGCNTCCCCAACTATCTTAGAACCNATCTAC
TTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTANTCTGTACTCNATCGT
CGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTATCTGTCAAA
GCTCATTTACCAGTATTAGAATCTTTCGGTTTCNCCGATGATTTACGTTCCCNCNCTGCC
GGTCAAGCTTTCCCNCAATGTGTCTTCGATCNNTGGGCTTCNATTGGTGTTGTCAACAAA
GATAAGAAAGCCTCTGAAGTCGCTTTAGCCTCCAGAAAGAGAAAAGGTTNAGCNCCNGAA
ATCC
Length of 3' end seq. 364
Connected seq. ID VHE642P
Connected seq.
>VHE642P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGANATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
----------TATATGCTGATGAATTAACTGCNTCCCCAACTATCTTAGAACCNATCTAC
TTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTANTCTGTACTCNATCGT
CGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTATCTGTCAAA
GCTCATTTACCAGTATTAGAATCTTTCGGTTTCNCCGATGATTTACGTTCCCNCNCTGCC
GGTCAAGCTTTCCCNCAATGTGTCTTCGATCNNTGGGCTTCNATTGGTGTTGTCAACAAA
GATAAGAAAGCCTCTGAAGTCGCTTTAGCCTCCAGAAAGAGAAAAGGTTNAGCNCCNGAA
ATCC
Length of connected seq. 714
Full length Seq ID -
Full length Seq. -
Length of full length seq. -