>AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/
XXXXXXXXXXTCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTC
CCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAGA
TTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGG
TAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGA
TAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACC
TGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCG
TAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCA
AGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCA
ACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAA
TTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACA
AATCCAAGAACAACAAGATAAATTAAATCAAGAAAGAAATCAACAATTATTAGAACAAGA
ACAAAATCAAAAANATTNATCATTCTTTCTTTT

---DSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGK
FNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRN
TLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNL
QEDQEQYELLLDQLYDEQQIQEQQDKLNQERNQQLLEQEQNQKXXSFFL

Frame A:
---lilihqlvklhlvmviplvrplvplvihwlihslvqiqsv*lvsi*lqrlli*llvv
nltlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fv
illrkckfnvkikilvnkikkiknn*liykienlvytkinkilnkrkepinkn*simn*i
ykkiknnmnfy*insmmnnksknnkin*ikkeinny*nknkikxixhsff


Frame B:
---*flyinw*nciw*w*fp**dhwyhw*yigsyirwyrfsrcnwfpynykdf*fdcww*
i*l*stih**ilrfnsitr**rn*keitkcsstitrtitcnlsinei*rskkfr**sns*
ys*gnanst*ksrywstksrr*rtin*ftk*rtwfiqkstrs*treksqstrinql*ief
trrsrti*tfirstl**ttnprttr*iksrkkstiirtrtkskxxiilsf


Frame C:
---DSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGK
FNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRN
TLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNL
QEDQEQYELLLDQLYDEQQIQEQQDKLNQERNQQLLEQEQNQKXXSFFL

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/                       1342   0.0
SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/                       1172   0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/                       1172   0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/                       1160   0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/                       1154   0.0
SFE858 (SFE858Q) /CSM/SF/SFE8-C/SFE858Q.Seq.d/                       1142   0.0
SFB370 (SFB370Q) /CSM/SF/SFB3-C/SFB370Q.Seq.d/                       1122   0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/                       1120   0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/                       1102   0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/                       1068   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.  1172  0.0  3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  3e-04  11
AC138344|AC138344.3 Mus musculus chromosome 9 clone RP23-16A18 map 9, WORKING DRAFT SEQUENCE, 12 unordered pieces.    36  0.005  7
L03534|L03534.1 Entamoeba histolytica myosin heavy chain (mhcA) gene, complete cds.    38  0.020  4
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    30  0.034  12
AE002101|AE002101.1 Ureaplasma urealyticum section 2 of 59 of the complete genome.    32  0.038  6
AC131480|AC131480.3 Rattus norvegicus clone CH230-10K5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38  0.038  5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40  0.042  5
AB025605|AB025605.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F5H8.    44  0.080  3
Y13119|Y13119.1 Dictyostelium discoideum mRNA for CudA protein.    38  0.13  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   341   1e-92
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    50   8e-05
CP001279_131(CP001279|pid:none) Nautilia profundicola AmH, compl...    49   2e-04
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    47   4e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    47   7e-04
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    46   9e-04
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    45   0.002
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    45   0.002
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    45   0.002
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ...    45   0.002

 psg: 0.74  gvh: 0.42  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for AFN735 is nuc

>AFN735Z.Seq
----------TCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTC
CCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAGA
TTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGG
TAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGA
TAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACC
TGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCG
TAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCA
AGAAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCA
ACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAA
TTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACA
AATCCAAGAACAACAAGATAAATTAAATCAAGAAAGAAATCAACAATTATTAGAACAAGA
ACAAAATCAAAAANATTNATCATTCTTTCTTTT