VHE614
Library VH
(Link to library)
Clone ID VHE614
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16494-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHE614 (VHE614Q) /CSM/VH/VHE6-A/VHE614Q.Seq.d/
GTTTTTAGTCCACCCTATTTCCAAAATGCCATCCAATAAAACATTAAAAATTAAAAAGAT
TTTAGGCAAAAAGCAAAAGCAAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGA
TAACACCATCAGATACAATAACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTA
AACGCCTCAGTGCAAGCTTATTGGAACATATCGATCATTATATATTTTAATAAAATTGAT
CTTTTGGACGTTTAACAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
FLVHPISKMPSNKTLKIKKILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*
tpqckligtyrslyiliklifwtfnkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
vfsppyfqnaiq*nikn*kdfrqkakakqtsptmdsfkn**hhqiq*qt*tletykawyl
nasvqaywnisiiiyfnkidlldv*qkk---


Frame B:
FLVHPISKMPSNKTLKIKKILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*
tpqckligtyrslyiliklifwtfnkkk---


Frame C:
f*stlfpkchpikh*klkrf*aksksktdqshngfv*elitpsdtitnvdigdvqslvsk
rlsasllehidhyif**n*sfgrltkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK412 (VSK412Q) /CSM/VS/VSK4-A/VSK412Q.Seq.d/ 341 3e-93
VSK409 (VSK409Q) /CSM/VS/VSK4-A/VSK409Q.Seq.d/ 341 3e-93
VSJ763 (VSJ763Q) /CSM/VS/VSJ7-C/VSJ763Q.Seq.d/ 341 3e-93
VSJ544 (VSJ544Q) /CSM/VS/VSJ5-B/VSJ544Q.Seq.d/ 341 3e-93
VSJ541 (VSJ541Q) /CSM/VS/VSJ5-B/VSJ541Q.Seq.d/ 341 3e-93
VSJ417 (VSJ417Q) /CSM/VS/VSJ4-A/VSJ417Q.Seq.d/ 341 3e-93
VSJ185 (VSJ185Q) /CSM/VS/VSJ1-D/VSJ185Q.Seq.d/ 341 3e-93
VSI602 (VSI602Q) /CSM/VS/VSI6-A/VSI602Q.Seq.d/ 341 3e-93
VSI566 (VSI566Q) /CSM/VS/VSI5-C/VSI566Q.Seq.d/ 341 3e-93
VSI565 (VSI565Q) /CSM/VS/VSI5-C/VSI565Q.Seq.d/ 341 3e-93

own update 2002.12.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

EC762571|EC762571.1 PSE00003315 rw_mgpallid Polysphondylium pallidum cDNA, mRNAsequence. 103 3e-18 1
EC761289|EC761289.1 PSE00003113 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence. 103 3e-18 1
EC745696|EC745696.1 PSE00002005 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence. 90 4e-14 1
EC745978|EC745978.1 PSE00008248 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence. 88 2e-13 1
EC828251|EC828251.1 TDE00001752 Advantage polymerase (lib1_td_adv) Taphrina deformans cDNA, mRNA sequence. 58 1e-04 1
EC745741|EC745741.1 PSE00006978 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence. 58 1e-04 1
CT797547|CT797547.1 Paramecium tetraurelia 5-PRIME EST from clone LK0AEA39YD22. 56 6e-04 1
DW700141|DW700141.1 EST023622 Trichophyton rubrum cDNA library 6 Trichophyton rubrum cDNA clone plasmid:FUNGI_8_040B_49, mRNA sequence. 52 0.009 1
DW696988|DW696988.1 EST020469 Trichophyton rubrum cDNA library 5 Trichophyton rubrum cDNA clone plasmid:FUNGI_7_031B_64, mRNA sequence. 52 0.009 1
DW696911|DW696911.1 EST020392 Trichophyton rubrum cDNA library 5 Trichophyton rubrum cDNA clone plasmid:FUNGI_7_030B_56, mRNA sequence. 52 0.009 1
dna update 2007. 8.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY961478_1(AY961478|pid:none) Phytophthora infestans clone MY-09... 70 3e-11
FM992688_598(FM992688|pid:none) Candida dubliniensis CD36 chromo... 68 9e-11
(Q96W55) RecName: Full=60S ribosomal protein L39; AltName: Full=... 68 9e-11
FJ362595_1(FJ362595|pid:none) Vernicia fordii 60S ribosomal prot... 67 2e-10
AP003019_37(AP003019|pid:none) Oryza sativa Japonica Group genom... 67 2e-10
(P51425) RecName: Full=60S ribosomal protein L39; &(P51426) Rec... 67 2e-10
CP000583_325(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 66 3e-10
EU952793_1(EU952793|pid:none) Zea mays clone 1289591 60S ribosom... 66 3e-10
CU633900_605(CU633900|pid:none) Podospora anserina genomic DNA c... 66 4e-10
(Q8L8W6) RecName: Full=60S ribosomal protein L39-2; &AK118748_1... 66 4e-10
protein update 2009. 6.30
PSORT

psg: 0.60 gvh: 0.10 alm: 0.59 top: 0.53 tms: 0.00 mit: 0.45 mip: 0.00
nuc: 0.27 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

88.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VHE614 is cyt

5' end seq. ID VHE614F
5' end seq.
>VHE614F.Seq
GTTTTTAGTCCACCCTATTTCCAAAATGCCATCCAATAAAACATTAAAAATTAAAAAGAT
TTTAGGCAAAAAGCAAAAGCAAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGA
TAACACCATCAGATACAATAACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTA
AACGCCTCAGTGCAAGCTTATTGGAACATATCGATCATTATATATTTTAATAAAATTGAT
CTTTTGGACGTTTAACAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 276
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -