VHE613 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHE613
Library	VH (Link to library)
Clone ID	VHE613 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15105-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHE6-A/VHE613Q.Seq.d/
Representative seq. ID	VHE613E (Link to Original site)
Representative DNA sequence	>VHE613 (VHE613Q) /CSM/VH/VHE6-A/VHE613Q.Seq.d/ ATCATACACACATACAATGACTAGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGG CGTTACTTGTCCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCAC TCCACATTCAGCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGT TGAACGTCTTGCCAACAGTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGC TGTCCGTATCATCGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACT CCAAGTTTTAGTCGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGG TTCAGCTGGTACTGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCA CGCTGTTTACNTCTTAACCCAAGGTANTCGTGCTGCTGCTTTCAGAAACATCAGAACTGT TGCTGAATGTTTAGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCNTACTC AATCAAACAAAAGGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAAT ATATTATATATTATTGNTTCTTTTTAAA
sequence update	2002.10.27
Translated Amino Acid sequence	SYTHTMTSEVALFGKWSYSGVTCPDISLQDYICVKKNVFTPHSAGRYNKVRFRKAQCPIV ERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIG SAGTVRRQAVDVSPMRRVNHAVYXLTQGXRAAAFRNIRTVAECLADELINASKGSPNSYS IKQKDALERTAKSHR*airiyyillxlfk
Translated Amino Acid sequence (All Frames)	Frame A: iihtynd*sciiwmvilwrylsrylltrlhlrkeclhstfsriqqsiqkgpmpnc tscqqyddvrkcwkshgcpyhrtslrnhlplnreptpsfsrschelwstrfnsyw fswycqtsscrcfpnetcqprclxlnprxscccfqkhqnccmfsinqclkrftkfxl nqtkgcfrtyrqipslsdsnilyiixsf Frame B: SYTHTMTSEVALFGKWSYSGVTCPDISLQDYICVKKNVFTPHSAGRYNKVRFRKAQCPIV ERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIG SAGTVRRQAVDVSPMRRVNHAVYXLTQGXRAAAFRNIRTVAECLADELINASKGSPNSYS IKQKDALERTAKSHRairiyyillxlfk Frame C: hthiqlvklhylvnghtlallvqispykitsalkrmsslhiqqvdttkldserpnaqll nvlptv*csvemlvkkswlsvssnkpsksstspirthskfsklstlvhvkiqlvlv qlvlsdvklsmfpqdvsttlftspkvxvlllsetselllnvlmnsmpqkvhqixtq snkrml*nvppnpivkrfeyiiyyxffl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHE613 (VHE613Q) /CSM/VH/VHE6-A/VHE613Q.Seq.d/ 1221 0.0 VSE854 (VSE854Q) /CSM/VS/VSE8-C/VSE854Q.Seq.d/ 1201 0.0 VSF223 (VSF223Q) /CSM/VS/VSF2-A/VSF223Q.Seq.d/ 1195 0.0 VSI727 (VSI727Q) /CSM/VS/VSI7-B/VSI727Q.Seq.d/ 1187 0.0 VSH720 (VSH720Q) /CSM/VS/VSH7-A/VSH720Q.Seq.d/ 1187 0.0 VSI164 (VSI164Q) /CSM/VS/VSI1-C/VSI164Q.Seq.d/ 1178 0.0 VSJ269 (VSJ269Q) /CSM/VS/VSJ2-C/VSJ269Q.Seq.d/ 1176 0.0 VSK446 (VSK446Q) /CSM/VS/VSK4-B/VSK446Q.Seq.d/ 1172 0.0 FC-BS16 (FC-BS16Q) /CSM/FC/FC-BS/FC-BS16Q.Seq.d/ 1172 0.0 VSF782 (VSF782Q) /CSM/VS/VSF7-D/VSF782Q.Seq.d/ 1168 0.0
own update	2002.12.26
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N CV735810\|CV735810.1 Cri2_14_B18_SP6 Ceratopteris Spore Library Ceratopteris richardiicDNA clone Cri2_14_B18 5', mRNA sequence. 113 4e-29 3 EC389036\|EC389036.1 G08_G08gm3l15_pDNRf_491362 Myzus persicae, line G006, whole aphid library Myzus persicae cDNA clone G08_G08gm3l15_pDNRf_491362, mRNA sequence. 88 6e-29 3 EH432014\|EH432014.1 NPE00000770 Neocallimastix patriciarum ZAP II cDNA library Neocallimastix patriciarum cDNA, mRNA sequence. 94 2e-28 4 EH432068\|EH432068.1 NPE00000852 Neocallimastix patriciarum ZAP II cDNA library Neocallimastix patriciarum cDNA, mRNA sequence. 94 2e-28 4 EH432062\|EH432062.1 NPE00000391 Neocallimastix patriciarum ZAP II cDNA library Neocallimastix patriciarum cDNA, mRNA sequence. 94 2e-28 4 EC390223\|EC390223.1 B06_B06nb2m12_pDNR-f_449359 Myzus persicae, tobacco lineage raised on Nicotiana benthamiana, whole aphid library Myzus persicae cDNA clone B06_B06nb2m12_pDNR-f_449359, mRNA sequence. 80 8e-27 3 ES224191\|ES224191.1 MpHnorm_ag5_C21 Myzus persicae, tobacco lineage, aphid head normalized library Myzus persicae cDNA clone MpHnorm_ag5_C21, mRNA sequence. 80 8e-27 3 DW012099\|DW012099.1 w15p13_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w15p13_M13F, mRNA sequence. 80 9e-27 3 ES226559\|ES226559.1 MpSG_ag7_A15 Myzus persicae, tobacco lineage, aphid salivary gland library Myzus persicae cDNA clone MpSG_ag7_A15, mRNA sequence. 80 9e-27 3 ES220472\|ES220472.1 MpGnorm_ag6_L11 Myzus persicae, tobacco lineage, aphid digestive tract normalized library Myzus persicae cDNA clone MpGnorm_ag6_L11, mRNA sequence. 80 9e-27 3
dna update	2007. 8.22
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54MA6) RecName: Full=40S ribosomal protein S5; 372 e-102 AY961565_1(AY961565\|pid:none) Lysiphlebus testaceipes ribosomal ... 269 4e-71 AY961522_1(AY961522\|pid:none) Lysiphlebus testaceipes ribosomal ... 269 6e-71 AK002235_1(AK002235\|pid:none) Mus musculus adult male kidney cDN... 269 6e-71 (P46782) RecName: Full=40S ribosomal protein S5; Contains: Rec... 269 6e-71 AY891473_1(AY891473\|pid:none) Synthetic construct Homo sapiens c... 269 6e-71 AB291558_1(AB291558\|pid:none) Solea senegalensis rpS5 mRNA for r... 268 7e-71 AF402813_1(AF402813\|pid:none) Ictalurus punctatus 40S ribosomal ... 268 7e-71 FJ196315_1(FJ196315\|pid:none) Auxenochlorella protothecoides rib... 268 7e-71 BC054263_1(BC054263\|pid:none) Xenopus laevis hypothetical protei... 267 2e-70
protein update	2009. 7.11
PSORT	psg: 0.75 gvh: 0.44 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 84.0 %: cytoplasmic 12.0 %: mitochondrial 4.0 %: nuclear >> prediction for VHE613 is cyt
5' end seq. ID	VHE613F
5' end seq.	>VHE613F.Seq ATCATACACACATACAATGACTAGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGG CGTTACTTGTCCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCAC TCCACATTCAGCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGT TGAACGTCTTGCCAACAGTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGC TGTCCGTATCATCGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACT CCAAGTTTTAGTCGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGG TTCAGCTGGTACTGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCA CGCTGTTTACCTCTTAACCCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGT TGCTGAATGTTTAGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTACTC AATCAAACAAAAGGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAAT ATATTATATATTATTGGTTCTTTTTANNNNNNNNNN
Length of 5' end seq.	636
3' end seq. ID	VHE613Z
3' end seq.	>VHE613Z.Seq NNNNNNNNNNATCATACACACATACAATGACTAGTGAAGTTGCATTATTTGGTAAATGGT CATANTCTGGCGTTACTTGTCCAGATATCTCNTTACAAGATTACATCTGCGTTAAAAAGA ATGTCTTCACTCCACATTCAGCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAAT GCCCAATTGTTGAACGTCTTGCCAACAGTATGATGATGTTCGGTAGAAATGCTGGTAAAA AAGTCATGGCTGTCCGTATCATCGAACAAGCNTTCGAAATCATCTACNTCTTAACCGATA AGAACCCACTCCAAGTTTTAGTCGAAGCTGTCATGAANTCTGGTCCACGTGAAGATTCAA CTCGTATTGGTTCAGCTGGTACTGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGAC GTGTCAACCACGCTGTTTACATCTTAACCCAAGGTAATCGTGCTGCTGCTTTCAGAAACA TCAGAACTGTTGCTGAATGTTTAGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAA ATTCTTACTCAATCAAACAAAAGGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAG CGATTCGAATATATTATATATTATTGTTTCTTTTTAAA
Length of 3' end seq.	638
Connected seq. ID	VHE613P
Connected seq.	>VHE613P.Seq ATCATACACACATACAATGACTAGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGG CGTTACTTGTCCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCAC TCCACATTCAGCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGT TGAACGTCTTGCCAACAGTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGC TGTCCGTATCATCGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACT CCAAGTTTTAGTCGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGG TTCAGCTGGTACTGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCA CGCTGTTTACCTCTTAACCCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGT TGCTGAATGTTTAGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTACTC AATCAAACAAAAGGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAAT ATATTATATATTATTGGTTCTTTTTA----------ATCATACACACATACAATGACTAG TGAAGTTGCATTATTTGGTAAATGGTCATANTCTGGCGTTACTTGTCCAGATATCTCNTT ACAAGATTACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCAGCAGGTAGATACAA CAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTTGCCAACAGTATGAT GATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCATCGAACAAGCNTT CGAAATCATCTACNTCTTAACCGATAAGAACCCACTCCAAGTTTTAGTCGAAGCTGTCAT GAANTCTGGTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTACTGTCAGACGTCA AGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACATCTTAACCCAAGG TAATCGTGCTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTTAGCTGATGAATT AATCAATGCCTCAAAAGGTTCACCAAATTCTTACTCAATCAAACAAAAGGATGCTTTAGA ACGTACCGCCAAATCCCATCGTTAAGCGATTCGAATATATTATATATTATTGTTTCTTTT TAAA
Length of connected seq.	1254
Full length Seq ID	VHE613E
Full length Seq.	>VHE613E.Seq ATCATACACACATACAATGACTAGTGAAGTTGCATTATTTGGTAAATGGTCATACTCTGG CGTTACTTGTCCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTTCAC TCCACATTCAGCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGT TGAACGTCTTGCCAACAGTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGC TGTCCGTATCATCGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCCACT CCAAGTTTTAGTCGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTATTGG TTCAGCTGGTACTGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAACCA CGCTGTTTACNTCTTAACCCAAGGTANTCGTGCTGCTGCTTTCAGAAACATCAGAACTGT TGCTGAATGTTTAGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCNTACTC AATCAAACAAAAGGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCGAAT ATATTATATATTATTGNTTCTTTTTAAA
Length of full length seq.	628

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas