VHE602
Library VH
(Link to library)
Clone ID VHE602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15977-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHE602 (VHE602Q) /CSM/VH/VHE6-A/VHE602Q.Seq.d/
XXXXXXXXXXATCTTACACTTTCACCAATAAAGATGCTTGCAAGATTTTAGGTTGTCAAT
CTGGAAATTATCAATTGGATTTAATCATTGGTGATCAATCAATCACTCCATTACAATGGA
ATTTCGGTGAAATTAATTTGAAATTCAATCAATCAACCATTCCAACCAATCGTTATCCAG
AACAACTCCCAATATCTCACAACTTTAGAGTAGCTGAAAAGAGACCACCACAATCTATNT
CAAGTTTATTCANTATCTTGGTCTTATCACCAATCGCCATCTTTGTCATTGGTATCTTAT
TCGTTGGTACCAATCTTGGTAGATTCCCAACTGGTATGGGTTTCATTTACACCATTGGTT
TCNTTGGTTGTATNTCTGCAACTGGTNTCTTAATTGTAAACTATTGGTTACACTCCACAA
TGGATGTTACCNTCAAAAATTTAGC
sequence update 2002. 9.10
Translated Amino Acid sequence
---SYTFTNKDACKILGCQSGNYQLDLIIGDQSITPLQWNFGEINLKFNQSTIPTNRYPE
QLPISHNFRVAEKRPPQSXSSLFXILVLSPIAIFVIGILFVGTNLGRFPTGMGFIYTIGF
XGCXSATGXLIVNYWLHSTMDVTXKNL


Translated Amino Acid sequence (All Frames)
Frame A:
---SYTFTNKDACKILGCQSGNYQLDLIIGDQSITPLQWNFGEINLKFNQSTIPTNRYPE
QLPISHNFRVAEKRPPQSXSSLFXILVLSPIAIFVIGILFVGTNLGRFPTGMGFIYTIGF
XGCXSATGXLIVNYWLHSTMDVTXKNL


Frame B:
---ltlspikmlarf*vvnleiinwi*slvinqslhyngisvkli*nsinqpfqpiviqn
nsqylttle*lkrdhhnlxqvysxswsyhqspslslvsyslvpilvdsqlvwvsftplvs
lvvxlqlvs*l*tigytpqwmlpski*


Frame C:
---lhfhq*rclqdfrlsiwklsigfnhw*sinhsitmefr*n*feiqsinhsnqslsrt
tpnisql*ss*ketttiyxkfixylglitnrhlchwylirwyqsw*ipnwygfhlhhwfx
wlyxcnwxlnckllvtlhngcyxqkfs


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE602 (VHE602Q) /CSM/VH/VHE6-A/VHE602Q.Seq.d/ 827 0.0
VSB482 (VSB482Q) /CSM/VS/VSB4-D/VSB482Q.Seq.d/ 793 0.0
VHQ120 (VHQ120Q) /CSM/VH/VHQ1-A/VHQ120Q.Seq.d/ 793 0.0
VHP310 (VHP310Q) /CSM/VH/VHP3-A/VHP310Q.Seq.d/ 793 0.0
VHM302 (VHM302Q) /CSM/VH/VHM3-A/VHM302Q.Seq.d/ 793 0.0
VHD225 (VHD225Q) /CSM/VH/VHD2-B/VHD225Q.Seq.d/ 793 0.0
VHC739 (VHC739Q) /CSM/VH/VHC7-B/VHC739Q.Seq.d/ 793 0.0
VHC534 (VHC534Q) /CSM/VH/VHC5-B/VHC534Q.Seq.d/ 793 0.0
VHC127 (VHC127Q) /CSM/VH/VHC1-B/VHC127Q.Seq.d/ 793 0.0
VFJ757 (VFJ757Q) /CSM/VF/VFJ7-C/VFJ757Q.Seq.d/ 793 0.0

own update 2002.12.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CR339063|CR339063.8 Zebrafish DNA sequence from clone CH211-247J10 in linkage group 20. 44 0.003 2
AC176336|AC176336.1 Strongylocentrotus purpuratus clone R3-3053M2, WORKING DRAFT SEQUENCE, 8 unordered pieces. 36 0.13 2
AC099772|AC099772.3 Mus Musculus Chromosome 5 RP23-319P12 Strain C57Bl6/J, complete sequence. 46 0.88 1
AC184640|AC184640.1 Strongylocentrotus purpuratus clone R3-3088D16, WORKING DRAFT SEQUENCE, 23 unordered pieces. 32 1.8 2
CT737186|CT737186.7 Zebrafish DNA sequence from clone DKEY-271J14 in linkage group 14. 34 1.8 2
AC176947|AC176947.1 Strongylocentrotus purpuratus clone R3-34B06, WORKING DRAFT SEQUENCE, 15 unordered pieces. 32 1.8 2
DR383836|DR383836.1 11441724 CERES-AN65 Arabidopsis thaliana cDNA clone 1336807 3', mRNA sequence. 44 3.5 1
DD420478|DD420478.1 Producing method of perfect sterile plants, plants produced thereby, and use thereof. 44 3.5 1
DD331363|DD331363.1 Producing process of transformed plants with male sterility, plants obtained using the same, and use thereof. 44 3.5 1
DD289088|DD289088.1 Producing process of monocotyledon with male sterility, plants produced by the process ,and use thereof. 44 3.5 1
dna update 2007. 8.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY058845_1(AY058845|pid:none) Arabidopsis thaliana AT4g21150/F7J... 58 9e-08
CR860502_1(CR860502|pid:none) Pongo abelii mRNA; cDNA DKFZp468G2... 54 2e-06
AK315801_1(AK315801|pid:none) Homo sapiens cDNA, FLJ96923, highl... 53 3e-06
(Q9GL01) RecName: Full=Dolichyl-diphosphooligosaccharide--protei... 53 3e-06
AK096243_1(AK096243|pid:none) Homo sapiens cDNA FLJ38924 fis, cl... 53 3e-06
(P04844) RecName: Full=Dolichyl-diphosphooligosaccharide--protei... 53 3e-06
DQ895552_1(DQ895552|pid:none) Synthetic construct Homo sapiens c... 53 3e-06
B26168(B26168)ribophorin II precursor - human 53 3e-06
Y00282_1(Y00282|pid:none) Human mRNA for ribophorin II. 53 3e-06
BC002380_1(BC002380|pid:none) Homo sapiens ribophorin II, mRNA (... 53 3e-06
protein update 2009. 2.27
PSORT

psg: 0.77 gvh: 0.31 alm: 0.13 top: 0.50 tms: 0.07 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
20.0 %: mitochondrial
16.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for VHE602 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHE602Z
3' end seq.
>VHE602Z.Seq
NNNNNNNNNNATCTTACACTTTCACCAATAAAGATGCTTGCAAGATTTTAGGTTGTCAAT
CTGGAAATTATCAATTGGATTTAATCATTGGTGATCAATCAATCACTCCATTACAATGGA
ATTTCGGTGAAATTAATTTGAAATTCAATCAATCAACCATTCCAACCAATCGTTATCCAG
AACAACTCCCAATATCTCACAACTTTAGAGTAGCTGAAAAGAGACCACCACAATCTATNT
CAAGTTTATTCANTATCTTGGTCTTATCACCAATCGCCATCTTTGTCATTGGTATCTTAT
TCGTTGGTACCAATCTTGGTAGATTCCCAACTGGTATGGGTTTCATTTACACCATTGGTT
TCNTTGGTTGTATNTCTGCAACTGGTNTCTTAATTGTAAACTATTGGTTACACTCCACAA
TGGATGTTACCNTCAAAAATTTAGC
Length of 3' end seq. 445
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -