VHE601
Library VH
(Link to library)
Clone ID VHE601
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16598-1
Original site URL
Representative seq. ID VHE601P
(Link to Original site)
Representative DNA sequence
>VHE601 (VHE601Q) /CSM/VH/VHE6-A/VHE601Q.Seq.d/
ATTATTTTTTTTTTTCAGTTNATTTATTTTTTTATATATATAAAAAAGGGCNTNTNTAAA
TACAGAATCGGATGATTATCATCCAATNGTTATTTTAATNGANGAATTAAAAAANGAGGA
TATNCAACTTANACTTAATTCAATAAAAAAACTTCAATCAATNGCAAAAGCNTTAGGACC
ANAACGTNCCCGTNCANAATTAATCCCATATTTACAAGACTNTGXXXXXXXXXXCTATCG
TTGAATTGGCTGAAGATCATCNATGGAGAGTAAGATTAGCNATTATTGATTATATTCCNC
TTTTAGCTTCCCAATTAGGTGTTGAATTTTTTGATGAAAAACTTGGTAATTTATGTATGA
CTTGGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCNNCTAATNATTTGAAGAAAT
TNCCCNAAGTATTTGGAGTTGNTTGGGCAAAGAATAATATTATTCCNAAAGTTTTATCTT
TACGCTTTCATCCAAA
sequence update 2002.10.25
Translated Amino Acid sequence
lffffsxfiflyi*KRAXXNTESDDYHPXVILXXELKXEDXQLXLNSIKKLQSXAKALGP
XRXRXXLIPYLQDX---

---IVELAEDHXWRVRLAIIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAAXN
XLKKXPXVFGVXWAKNNIIPKVLSLRFHP


Translated Amino Acid sequence (All Frames)
Frame A:
iifffqxiyffiyikkgxxkyrig*lssnxyfnxxikkxgyxtxt*fnkktsinxksxrt
xtxpxxinpiftrl---

---lslnwlkiixge*d*xlliifxf*lpn*vlnflmknlviyv*lg*viqyfqfvkqxl
xi*rnxpkylelxgqriilfxkfylyafiq

Frame B:
lffffsxfiflyi*KRAXXNTESDDYHPXVILXXELKXEDXQLXLNSIKKLQSXAKALGP
XRXRXXLIPYLQDX---

---yr*ig*rssmeskisxy*lysxfsfpirc*if**ktw*fmydlvr*ssifns*ssx*
xfeeixxsiwsxlgke*yysxsfiftlssk

Frame C:
yfffsvxlffyiykkgxx*iqnrmiiiqxlf*xxn*kxrixnlxliq*knfnqxqkx*dx
nvpvxn*shiyktx---

---IVELAEDHXWRVRLAIIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAAXN
XLKKXPXVFGVXWAKNNIIPKVLSLRFHP

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE601 (VHE601Q) /CSM/VH/VHE6-A/VHE601Q.Seq.d/ 626 e-179
VHB858 (VHB858Q) /CSM/VH/VHB8-C/VHB858Q.Seq.d/ 422 e-117
VFM765 (VFM765Q) /CSM/VF/VFM7-C/VFM765Q.Seq.d/ 422 e-117
VFI677 (VFI677Q) /CSM/VF/VFI6-D/VFI677Q.Seq.d/ 422 e-117
CHE107 (CHE107Q) /CSM/CH/CHE1-A/CHE107Q.Seq.d/ 422 e-117
CHA389 (CHA389Q) /CSM/CH/CHA3-D/CHA389Q.Seq.d/ 422 e-117
VSH441 (VSH441Q) /CSM/VS/VSH4-B/VSH441Q.Seq.d/ 420 e-117
VFK131 (VFK131Q) /CSM/VF/VFK1-B/VFK131Q.Seq.d/ 420 e-117
VFJ649 (VFJ649Q) /CSM/VF/VFJ6-C/VFJ649Q.Seq.d/ 420 e-117
VFG701 (VFG701Q) /CSM/VF/VFG7-A/VFG701Q.Seq.d/ 420 e-117

own update 2004.12.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U61987|U61987.1 Dictyostelium discoideum phosphoprotein phosphatase A (pppA) mRNA, complete cds. 420 e-176 3
BU276111|BU276111.1 Cr_Emb_06C12_TEXF1 Convoluta roscoffensis embryos from Eva Jiminez Convoluta roscoffensis cDNA clone Cr_Emb_06C12 5' similar to Q23922 PHOSPHOPROTEIN PHOSPHATASE A. Dictyostelium discoideum, mRNA sequence. 44 3e-08 3
CK764183|CK764183.1 nad03-11cs4-c11 Nad03 Nuphar advena cDNA clone nad03-11cs4-c11 5', mRNA sequence. 54 0.004 1
CF445234|CF445234.1 EST681579 normalized cDNA library of onion Allium cepa cDNA clone ACAIG58, mRNA sequence. 50 0.063 1
CF441217|CF441217.1 EST677562 normalized cDNA library of onion Allium cepa cDNA clone ACAGF91, mRNA sequence. 50 0.063 1
AL428358|AL428358.1 clone BA0AB025C09 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 50 0.063 1
CR382126|CR382126.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis. 50 0.063 1
DN313044|DN313044.1 PL06014B1C12 cDNA from juvenile hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence. 48 0.25 1
DN312814|DN312814.1 PL06013B2H03 cDNA from juvenile hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence. 48 0.25 1
DN303827|DN303827.1 PL05004A1F11 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 3', mRNA sequence. 48 0.25 1
dna update 2007. 8.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei... 157 2e-37
AM920433_216(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 127 2e-28
(Q9UT08) RecName: Full=Protein phosphatase PP2A regulatory subun... 124 2e-27
AM270402_10(AM270402|pid:none) Aspergillus niger contig An18c010... 122 4e-27
AE017353_214(AE017353|pid:none) Cryptococcus neoformans var. neo... 122 4e-27
BC043624_1(BC043624|pid:none) Xenopus laevis phosphorylase phosp... 116 3e-25
S65952(S65952;S72499)[phosphorylase] phosphatase (EC 3.1.3.17) b... 116 3e-25
BC075576_1(BC075576|pid:none) Xenopus tropicalis platelet-derive... 116 3e-25
AK292275_1(AK292275|pid:none) Homo sapiens cDNA FLJ76434 complet... 115 6e-25
CR860766_1(CR860766|pid:none) Pongo abelii mRNA; cDNA DKFZp459F2... 115 6e-25
protein update 2009. 6.30
PSORT

psg: 0.75 gvh: 0.50 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHE601 is cyt

5' end seq. ID VHE601F
5' end seq.
>VHE601F.Seq
ATTATTTTTTTTTTTCAGTTNATTTATTTTTTTATATATATAAAAAAGGGCNTNTNTAAA
TACAGAATCGGATGATTATCATCCAATNGTTATTTTAATNGANGAATTAAAAAANGAGGA
TATNCAACTTANACTTAATTCAATAAAAAAACTTCAATCAATNGCAAAAGCNTTAGGACC
ANAACGTNCCCGTNCANAATTAATCCCATATTTACAAGACTNTGNNNNNNNNNN
Length of 5' end seq. 234
3' end seq. ID VHE601Z
3' end seq.
>VHE601Z.Seq
NNNNNNNNNNCTATCGTTGAATTGGCTGAAGATCATCNATGGAGAGTAAGATTAGCNATT
ATTGATTATATTCCNCTTTTAGCTTCCCAATTAGGTGTTGAATTTTTTGATGAAAAACTT
GGTAATTTATGTATGACTTGGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCNNCT
AATNATTTGAAGAAATTNCCCNAAGTATTTGGAGTTGNTTGGGCAAAGAATAATATTATT
CCNAAAGTTTTATCTTTACGCTTTCATCCAAA
Length of 3' end seq. 272
Connected seq. ID VHE601P
Connected seq.
>VHE601P.Seq
ATTATTTTTTTTTTTCAGTTNATTTATTTTTTTATATATATAAAAAAGGGCNTNTNTAAA
TACAGAATCGGATGATTATCATCCAATNGTTATTTTAATNGANGAATTAAAAAANGAGGA
TATNCAACTTANACTTAATTCAATAAAAAAACTTCAATCAATNGCAAAAGCNTTAGGACC
ANAACGTNCCCGTNCANAATTAATCCCATATTTACAAGACTNTG----------CTATCG
TTGAATTGGCTGAAGATCATCNATGGAGAGTAAGATTAGCNATTATTGATTATATTCCNC
TTTTAGCTTCCCAATTAGGTGTTGAATTTTTTGATGAAAAACTTGGTAATTTATGTATGA
CTTGGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCNNCTAATNATTTGAAGAAAT
TNCCCNAAGTATTTGGAGTTGNTTGGGCAAAGAATAATATTATTCCNAAAGTTTTATCTT
TACGCTTTCATCCAAA
Length of connected seq. 486
Full length Seq ID -
Full length Seq. -
Length of full length seq. -