VHE595 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHE595
Library	VH (Link to library)
Clone ID	VHE595 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16372-1\|Contig-U16442-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHE5-D/VHE595Q.Seq.d/
Representative seq. ID	VHE595P (Link to Original site)
Representative DNA sequence	>VHE595 (VHE595Q) /CSM/VH/VHE5-D/VHE595Q.Seq.d/ ATTTTCATTTTCCCAAAATGAAACAAGATAAAATAAATGAAATTATAAATTATTTAAAAT TTATTGAAGATAATAATTTTGAAAATACTAAACATAAAAATTATAAATTTTTACATGATG AAAACAGAAAAGAAAAATTATTTAGAATTGAAAAAAAAGTCATGAATTGTGGCGGAGATA GAAACATATCAAAAGAAGTGTGTTTAGAAGTAATTAATGATTATAGAATGGTATCACTCT GGGAAGAAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTA AATATTATAATATGGGATTGTATTCTTTTGTATCTGATGCAGTAGATACGTGTGACATTT GCCAACGAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGG AATACTCAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTA CATACGATGATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACT CTGTACAACCCGTACGACACCGATGTTGTTTACATTATTCTATGCATAGATTCTTTTACA AAATTTGXXXXXXXXXXGTAAGGATTTATCCAATTTCAACTTGCATCAATTGGTAACACA AAATGATCCATTTAGGGTTTTGGAAGATGATNTTAACAATCCATCAAATATTCCACTTAT CATTAACGATAATCCATTTCAACACAAACTCAATAATGAAATGGAACAAGAAGAAATACT CCCATTTTTAAATAATAATCCAACAGCGCCAAATTTAATGAATTGTTTGAGAAAGGATAT GAATTTAAAAGAAATAGTACCNCCAATACTTCAAGTGCAAATAATACCATCGTATACTAT ACCACAATCTGGTAGTGGTATAGTAACAACTGTTAAACGTNTCAGAGGCCGTCTTCATAA GATACCAATTGTTAATAAACNTCNTTTAAAATCACATTATAAACCATCCAAATCACNTCT CAAATCACCATCCATTTCACNTTCCAATTCACCATTTAAATCACCATTTAAATCACTTTC CAAATCACCATTTAAATCACNTTCCAAATCACCATCCATTTCACTTTCCAATTCACCATT TAAATCACTTTCCAATTCACNTTTTAAATCACCATTTAAATCACTTTCCAAATCACCATC AATAGGAAAAATCGTTAATGTGATACNTTCAAAAAAAGTTGCAA
sequence update	2002.10.25
Translated Amino Acid sequence	FHFPKMKQDKINEIINYLKFIEDNNFENTKHKNYKFLHDENRKEKLFRIEKKVMNCGGDR NISKEVCLEVINDYRMVSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCDIC QRNRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDLIQYDS VQPVRHRCCLHYSMHRFFYKI--- ---KDLSNFNLHQLVTQNDPFRVLEDDXNNPSNIPLIINDNPFQHKLNNEMEQEEILPFL NNNPTAPNLMNCLRKDMNLKEIVPPILQVQIIPSYTIPQSGSGIVTTVKRXRGRLHKIPI VNKXXLKSHYKPSKSXLKSPSISXSNSPFKSPFKSLSKSPFKSXSKSPSISLSNSPFKSL SNSXFKSPFKSLSKSPSIGKIVNVIXSKKVA
Translated Amino Acid sequence (All Frames)	Frame A: ififpknkikmkliinllkiiilkilnikiinfymmktekknylelkkksivaei etyqkkcvklmiiewyhsgkkcikvieemqpmgttrlniiiwdcillylmqirvtf aneiekvqrillqliprntqdwfmihqlkvnikkklhtmmimkrylnmilsnmt lynpydtdvvyiilcidsftkf--- ---vriypistcinwhkmihlgfwkmxltihqifhlsltiihfntnsimkwnkkkyshf iiiqqrqiiveriikkyxqyfkckyhrilyhnlvvv*qllnvseavfiryq llinxxnhiinhpnhxsnhhpfhxpihhlnhhlnhfpnhhlnhxpnhhpfhfpihhlnh fpihxlnhhlnhfpnhhqekslmyxqkklq Frame B: fsfsqnetrnknyklfkiyrfkytkliftkqkrkiinkkshelwrr khikrsvfrsn*lngitlgrnarsyrkrcnlwelqdilygivffcicsryvhl ptknkrynkgfcsncryrgilkiglfninrtrksyir***kdtntrsypil cttrttpmlftlfyaillqnl--- ---gfiqfqlasigntksigfgrxqsikystyhrsistqtqngtrrntpif ksnsakfnelfekgyefkrnstxntssanntivyyttiwwysnnctxqrpssdtn ctsfkitltiqitsqitihftfqftiitiitfqitiitfqitihftfqftiit fqftfitiitfqitinrknr*cdtfkksc Frame C: FHFPKMKQDKINEIINYLKFIEDNNFENTKHKNYKFLHDENRKEKLFRIEKKVMNCGGDR NISKEVCLEVINDYRMVSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCDIC QRNRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDLIQYDS VQPVRHRCCLHYSMHRFFYKI--- ---KDLSNFNLHQLVTQNDPFRVLEDDXNNPSNIPLIINDNPFQHKLNNEMEQEEILPFL NNNPTAPNLMNCLRKDMNLKEIVPPILQVQIIPSYTIPQSGSGIVTTVKRXRGRLHKIPI VNKXXLKSHYKPSKSXLKSPSISXSNSPFKSPFKSLSKSPFKSXSKSPSISLSNSPFKSL SNSXFKSPFKSLSKSPSIGKIVNVIXSKKVA
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHE595 (VHE595Q) /CSM/VH/VHE5-D/VHE595Q.Seq.d/ 2272 0.0 AHH245 (AHH245Q) /CSM/AH/AHH2-B/AHH245Q.Seq.d/ 1124 0.0 AHG491 (AHG491Q) /CSM/AH/AHG4-D/AHG491Q.Seq.d/ 1120 0.0 AHD628 (AHD628Q) /CSM/AH/AHD6-B/AHD628Q.Seq.d/ 1120 0.0 AHC106 (AHC106Q) /CSM/AH/AHC1-A/AHC106Q.Seq.d/ 1120 0.0 AHQ286 (AHQ286Q) /CSM/AH/AHQ2-D/AHQ286Q.Seq.d/ 1118 0.0 AHJ167 (AHJ167Q) /CSM/AH/AHJ1-C/AHJ167Q.Seq.d/ 1118 0.0 AHJ106 (AHJ106Q) /CSM/AH/AHJ1-A/AHJ106Q.Seq.d/ 1112 0.0 CHO813 (CHO813Q) /CSM/CH/CHO8-A/CHO813Q.Seq.d/ 1110 0.0 VHQ196 (VHQ196Q) /CSM/VH/VHQ1-D/VHQ196Q.Seq.d/ 1104 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U57081\|U57081.1 Dictyostelium discoideum Tdd-4 transposable element encodes putative transposition inhibitor and putative transposase, complete cds. 1082 0.0 1 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 438 0.0 8 AF298206\|AF298206.2 Dictyostelium discoideum transposon Tdd-5, complete sequence. 52 7e-09 2 BU464410\|BU464410.1 603369110F1 CSEQRBN19 Gallus gallus cDNA clone ChEST273c3 5', mRNA sequence. 40 0.009 2 EK143799\|EK143799.1 1095456010529 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005719281 5', genomic survey sequence. 38 0.21 2 BX294098\|BX294098.11 Zebrafish DNA sequence from clone CH211-254P12 in linkage group 24. 42 0.41 6 BX294095\|BX294095.13 Zebrafish DNA sequence from clone CH211-248L17 in linkage group 24. 42 1.2 4 ER963546\|ER963546.1 SOOAK19TF LargeInsertSoybeanGenLibBuild4 Glycine max genomic clone 16C13, genomic survey sequence. 34 1.8 2 AY712677\|AY712677.1 Apis koschevnikovi isolate 1 tRNA-Ile gene and NADH dehydrogenase subunit 2 gene, partial sequence; mitochondrial. 34 1.8 2 DC227858\|DC227858.1 Plasmodium berghei strain ANKA cDNA clone:SG010369, salivary grand sporozoite 5'-EST. 46 2.6 1
dna update	2007. 8.22
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value U57081_1(U57081\|pid:none) Dictyostelium discoideum Tdd-4 transpo... 372 e-108 U57081_2(U57081\|pid:none) Dictyostelium discoideum Tdd-4 transpo... 372 e-108 AJ893357_41(AJ893357\|pid:none) Phytophthora infestans, clone PI-... 39 0.39 CP000922_1519(CP000922\|pid:none) Anoxybacillus flavithermus WK1,... 38 0.66 CP001056_1545(CP001056\|pid:none) Clostridium botulinum B str. Ek... 38 0.66 AC096687_18(AC096687\|pid:none) Oryza sativa chromosome 3 BAC OSJ... 38 0.66 AF049230_3(AF049230\|pid:none) Dictyostelium discoideum LTR-retro... 38 0.86 AY095181_1(AY095181\|pid:none) Drosophila melanogaster GM07634 fu... 37 1.1 DQ645742_1(DQ645742\|pid:none) Phytophthora sojae transposon Gyps... 37 1.1 CP000679_970(CP000679\|pid:none) Caldicellulosiruptor saccharolyt... 37 1.1
protein update	2009. 6.30
PSORT	psg: 0.69 gvh: 0.24 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for VHE595 is cyt
5' end seq. ID	VHE595F
5' end seq.	>VHE595F.Seq ATTTTCATTTTCCCAAAATGAAACAAGATAAAATAAATGAAATTATAAATTATTTAAAAT TTATTGAAGATAATAATTTTGAAAATACTAAACATAAAAATTATAAATTTTTACATGATG AAAACAGAAAAGAAAAATTATTTAGAATTGAAAAAAAAGTCATGAATTGTGGCGGAGATA GAAACATATCAAAAGAAGTGTGTTTAGAAGTAATTAATGATTATAGAATGGTATCACTCT GGGAAGAAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTA AATATTATAATATGGGATTGTATTCTTTTGTATCTGATGCAGTAGATACGTGTGACATTT GCCAACGAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGG AATACTCAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTA CATACGATGATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACT CTGTACAACCCGTACGACACCGATGTTGTTTACATTATTCTATGCATAGATTCTTTTACA AAATTTGNNNNNNNNNN
Length of 5' end seq.	617
3' end seq. ID	VHE595Z
3' end seq.	>VHE595Z.Seq NNNNNNNNNNGTAAGGATTTATCCAATTTCAACTTGCATCAATTGGTAACACAAAATGAT CCATTTAGGGTTTTGGAAGATGATNTTAACAATCCATCAAATATTCCACTTATCATTAAC GATAATCCATTTCAACACAAACTCAATAATGAAATGGAACAAGAAGAAATACTCCCATTT TTAAATAATAATCCAACAGCGCCAAATTTAATGAATTGTTTGAGAAAGGATATGAATTTA AAAGAAATAGTACCNCCAATACTTCAAGTGCAAATAATACCATCGTATACTATACCACAA TCTGGTAGTGGTATAGTAACAACTGTTAAACGTNTCAGAGGCCGTCTTCATAAGATACCA ATTGTTAATAAACNTCNTTTAAAATCACATTATAAACCATCCAAATCACNTCTCAAATCA CCATCCATTTCACNTTCCAATTCACCATTTAAATCACCATTTAAATCACTTTCCAAATCA CCATTTAAATCACNTTCCAAATCACCATCCATTTCACTTTCCAATTCACCATTTAAATCA CTTTCCAATTCACNTTTTAAATCACCATTTAAATCACTTTCCAAATCACCATCAATAGGA AAAATCGTTAATGTGATACNTTCAAAAAAAGTTGCAA
Length of 3' end seq.	637
Connected seq. ID	VHE595P
Connected seq.	>VHE595P.Seq ATTTTCATTTTCCCAAAATGAAACAAGATAAAATAAATGAAATTATAAATTATTTAAAAT TTATTGAAGATAATAATTTTGAAAATACTAAACATAAAAATTATAAATTTTTACATGATG AAAACAGAAAAGAAAAATTATTTAGAATTGAAAAAAAAGTCATGAATTGTGGCGGAGATA GAAACATATCAAAAGAAGTGTGTTTAGAAGTAATTAATGATTATAGAATGGTATCACTCT GGGAAGAAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTA AATATTATAATATGGGATTGTATTCTTTTGTATCTGATGCAGTAGATACGTGTGACATTT GCCAACGAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGG AATACTCAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTA CATACGATGATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACT CTGTACAACCCGTACGACACCGATGTTGTTTACATTATTCTATGCATAGATTCTTTTACA AAATTTG----------GTAAGGATTTATCCAATTTCAACTTGCATCAATTGGTAACACA AAATGATCCATTTAGGGTTTTGGAAGATGATNTTAACAATCCATCAAATATTCCACTTAT CATTAACGATAATCCATTTCAACACAAACTCAATAATGAAATGGAACAAGAAGAAATACT CCCATTTTTAAATAATAATCCAACAGCGCCAAATTTAATGAATTGTTTGAGAAAGGATAT GAATTTAAAAGAAATAGTACCNCCAATACTTCAAGTGCAAATAATACCATCGTATACTAT ACCACAATCTGGTAGTGGTATAGTAACAACTGTTAAACGTNTCAGAGGCCGTCTTCATAA GATACCAATTGTTAATAAACNTCNTTTAAAATCACATTATAAACCATCCAAATCACNTCT CAAATCACCATCCATTTCACNTTCCAATTCACCATTTAAATCACCATTTAAATCACTTTC CAAATCACCATTTAAATCACNTTCCAAATCACCATCCATTTCACTTTCCAATTCACCATT TAAATCACTTTCCAATTCACNTTTTAAATCACCATTTAAATCACTTTCCAAATCACCATC AATAGGAAAAATCGTTAATGTGATACNTTCAAAAAAAGTTGCAA
Length of connected seq.	1234
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas