VHE559
Library VH
(Link to library)
Clone ID VHE559
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16505-1
Original site URL
Representative seq. ID VHE559P
(Link to Original site)
Representative DNA sequence
>VHE559 (VHE559Q) /CSM/VH/VHE5-C/VHE559Q.Seq.d/
ATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCC
TTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGAT
TACTTGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAA
TAATAATAATATAAAAAAAAAAXXXXXXXXXXATCAAATTCTTTAGAGAAGATAAATGTA
TCTTTTTTGTACCNATTAATCGTGATGATGCNTTCACTCTTCGTTATCAAGATAATACAT
GGGATCCAGTTGAATATGATGTTTTAATGATTACTTGGGTCAAAATCAAGATAA
sequence update 2002.10.25
Translated Amino Acid sequence
snslekinvsflyqlivmmpslfvikiihgiqlnmmf*LITWVKIKINGFLVVYHENNNN
NNNIKKK---

---IKFFREDKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLMITWVKIKI


Translated Amino Acid sequence (All Frames)
Frame A:
ikffredkciffvpinrddaftlryqdntwdpveydvlidylgqnqdkwfsgglp*k***
***ykkk---

---IKFFREDKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLMITWVKIKI

Frame B:
snslekinvsflyqlivmmpslfvikiihgiqlnmmf*LITWVKIKINGFLVVYHENNNN
NNNIKKK---

---snslekinvsflyxlivmmxslfvikiihgiqlnmmf**llgsksr*

Frame C:
qil*rr*mylfctn*s**clhsslsr*ymgss*i*cfn*llgsksr*mvfwwftmkiiii
iii*kk---

---qil*rr*mylfctx*s**cxhsslsr*ymgss*i*cfndylgqnqd

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK377 (VSK377Q) /CSM/VS/VSK3-D/VSK377Q.Seq.d/ 335 3e-91
VSJ788 (VSJ788Q) /CSM/VS/VSJ7-D/VSJ788Q.Seq.d/ 335 3e-91
VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/ 335 3e-91
VSI304 (VSI304Q) /CSM/VS/VSI3-A/VSI304Q.Seq.d/ 335 3e-91
VSI168 (VSI168Q) /CSM/VS/VSI1-C/VSI168Q.Seq.d/ 335 3e-91
VSF487 (VSF487Q) /CSM/VS/VSF4-D/VSF487Q.Seq.d/ 335 3e-91
VSF255 (VSF255Q) /CSM/VS/VSF2-C/VSF255Q.Seq.d/ 335 3e-91
VSF188 (VSF188Q) /CSM/VS/VSF1-D/VSF188Q.Seq.d/ 335 3e-91
VSE526 (VSE526Q) /CSM/VS/VSE5-B/VSE526Q.Seq.d/ 335 3e-91
VSD792 (VSD792Q) /CSM/VS/VSD7-D/VSD792Q.Seq.d/ 335 3e-91

own update 2002.12.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds. 331 8e-87 1
X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore germination protein. 86 8e-13 1
AM622604|AM622604.1 Entamoeba invadens IP1 GSS, clone inv104h10.p1k. 38 0.23 2
ES783565|ES783565.1 gmnlmfta_0002g23.t7 Gadus morhua skeletal muscle SSH library enriched for genes up-regulated by acute thermal stress Gadus morhua cDNA, mRNA sequence. 46 0.69 1
DH340173|DH340173.1 Oryzias latipes Fosmid clone:GOLWFno709_k11, forward end. 40 1.8 2
AC183333|AC183333.2 Aotus nancymaae clone CH258-221G21, WORKING DRAFT SEQUENCE, 3 ordered pieces. 44 2.2 2
EL426587|EL426587.1 CHCM6020.b1_G18.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCM6020, mRNA sequence. 44 2.7 1
EL422662|EL422662.1 CHCM2239.b1_N08.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCM2239, mRNA sequence. 44 2.7 1
AC157001|AC157001.3 Bos taurus clone CH240-69N23, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces. 44 2.7 1
AC183719|AC183719.1 Callicebus moloch clone LB5-269L21, WORKING DRAFT SEQUENCE, 3 unordered pieces. 44 2.7 1
dna update 2007. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000568_1767(CP000568|pid:none) Clostridium thermocellum ATCC 2... 32 8.9

protein update 2009. 2.27
PSORT

psg: 0.86 gvh: 0.29 alm: 0.43 top: 0.43 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHE559 is cyt

5' end seq. ID VHE559F
5' end seq.
>VHE559F.Seq
ATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCC
TTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGAT
TACTTGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAA
TAATAATAATATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 212
3' end seq. ID VHE559Z
3' end seq.
>VHE559Z.Seq
NNNNNNNNNNATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCNATTAATCG
TGATGATGCNTTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGT
TTTAATGATTACTTGGGTCAAAATCAAGATAA
Length of 3' end seq. 152
Connected seq. ID VHE559P
Connected seq.
>VHE559P.Seq
ATCAAATTCTTTAGAGAAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCC
TTCACTCTTCGTTATCAAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGAT
TACTTGGGTCAAAATCAAGATAAATGGTTTTCTGGTGGTTTACCATGAAAATAATAATAA
TAATAATAATATAAAAAAAAAA----------ATCAAATTCTTTAGAGAAGATAAATGTA
TCTTTTTTGTACCNATTAATCGTGATGATGCNTTCACTCTTCGTTATCAAGATAATACAT
GGGATCCAGTTGAATATGATGTTTTAATGATTACTTGGGTCAAAATCAAGATAA
Length of connected seq. 344
Full length Seq ID -
Full length Seq. -
Length of full length seq. -