>VHE539 (VHE539Q) /CSM/VH/VHE5-B/VHE539Q.Seq.d/
AAAAAGATTCTCAAGGAATTCACCGTGTTTATACTTCTTATGGTAGAACTGATGGACCAA
AAACTTTAGAAGTTAGATATGTTGATAATTTAGAAGATGGTATTGATCTTTATTCAAGTA
TTTATAATGAAAAAACAAGTGATAAAAAAGGTTATAAACCAGTTAAATTGGATTCATCAT
CAGTTAGTAGTTCAACTTCAACAGAATCATTAATTACAGCTGATAGTCAATTAGAACCAT
TAATAAAGACATTGGTTGAAAATCTTTATGTTGAAGCAACCACTCAATTGACAAATAGTT
TTTCAGTTACAATCACTGAACGTGGTATTGAAACACCATTGGGTGTCTTATCAATGGAAC
AAGTTGAAAATGGTGAACTTGTTTTGAAAAAAATCAATACCTATTTGAATGGTACAACCA
ATCCATCATCAGTAGAGTTGGAGAAATTAAGTTCAGAATTTTTCACAATTATTCCACATA
AACTTGGTAGAGGTTCAGATGTTGTCTCAAAGAATACCATTAGAAATTTGGATCAATTGA
ATACCAAATTCGAATTACTTCAATTAATGAAAGATTTATTGGTGGTTAAAGTTTCAGGTA
CTGGTAAACATGCACTCGATATGAAATATCGTGCATTAAAXXXXXXXXXX

KDSQGIHRVYTSYGRTDGPKTLEVRYVDNLEDGIDLYSSIYNEKTSDKKGYKPVKLDSSS
VSSSTSTESLITADSQLEPLIKTLVENLYVEATTQLTNSFSVTITERGIETPLGVLSMEQ
VENGELVLKKINTYLNGTTNPSSVELEKLSSEFFTIIPHKLGRGSDVVSKNTIRNLDQLN
TKFELLQLMKDLLVVKVSGTGKHALDMKYRAL---

Frame A:
kkilkeftvfillmvelmdqkl*kldmlii*kmvlifiqvfimkkqvikkvinqlnwihh
qlvvqlqqnh*lqlivn*nh**rhwlkifmlkqpln*qivfqlqslnvvlkhhwvsyqwn
klkmvnlf*kksipi*mvqpihhq*swrn*vqnfsqlfhinlvevqmlsqripleiwin*
ipnsnyfn**kiywwlkfqvlvnmhsi*nivh*---


Frame B:
krfsrnspclyflw*n*wtknfrs*ic**frrwy*slfkyl**knk**krl*ts*igfii
s**fnfnriinys**sirtinkdig*kslc*snhsidk*ffsynh*twy*ntigclingt
s*kw*tcfeknqylfewynqsiisrvgeikfrifhnyst*tw*rfrcclkeyh*kfgsie
yqiritsinerfigg*sfryw*tctryeisci---


Frame C:
KDSQGIHRVYTSYGRTDGPKTLEVRYVDNLEDGIDLYSSIYNEKTSDKKGYKPVKLDSSS
VSSSTSTESLITADSQLEPLIKTLVENLYVEATTQLTNSFSVTITERGIETPLGVLSMEQ
VENGELVLKKINTYLNGTTNPSSVELEKLSSEFFTIIPHKLGRGSDVVSKNTIRNLDQLN
TKFELLQLMKDLLVVKVSGTGKHALDMKYRAL---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE539 (VHE539Q) /CSM/VH/VHE5-B/VHE539Q.Seq.d/                       1227   0.0
VHI446 (VHI446Q) /CSM/VH/VHI4-B/VHI446Q.Seq.d/                        706   0.0
SLC639 (SLC639Q) /CSM/SL/SLC6-B/SLC639Q.Seq.d/                         40   0.041
VSJ847 (VSJ847Q) /CSM/VS/VSJ8-B/VSJ847Q.Seq.d/                         38   0.16
VSD205 (VSD205Q) /CSM/VS/VSD2-A/VSD205Q.Seq.d/                         38   0.16
AFG470 (AFG470Q) /CSM/AF/AFG4-C/AFG470Q.Seq.d/                         38   0.16
VFI814 (VFI814Q) /CSM/VF/VFI8-A/VFI814Q.Seq.d/                         36   0.64
SHJ666 (SHJ666Q) /CSM/SH/SHJ6-C/SHJ666Q.Seq.d/                         36   0.64
CHA461 (CHA461Q) /CSM/CH/CHA4-C/CHA461Q.Seq.d/                         36   0.64
CFG201 (CFG201Q) /CSM/CF/CFG2-A/CFG201Q.Seq.d/                         36   0.64

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC007777|AC007777.4 Homo sapiens chromosome 18 clone RP11-493O9 map 18, WORKING DRAFTSEQUENCE, 12 unordered pieces.    40   0.14   4
ED075230|ED075230.1 AUAC-aat92d06.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    48   0.33   1
AC189565|AC189565.1 Brassica rapa subsp. pekinensis clone KBrH009C15, complete sequence.    36   0.71   2
AC189350|AC189350.1 Brassica rapa subsp. pekinensis clone KBrB043B23, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    36   0.71   2
AC137540|AC137540.2 Felis catus clone RP86-386P20, WORKING DRAFT SEQUENCE, 9 ordered pieces.    40   1.0    3
CR555291|CR555291.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-58J8.    46   1.3    1
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    46   1.3    1
CU329671|CU329671.1 Schizosaccharomyces pombe chromosome II.       46   1.3    1
CR854945|CR854945.5 Zebrafish DNA sequence from clone DKEY-155H10 in linkage group 13.    46   1.3    1
CR792443|CR792443.13 Zebrafish DNA sequence from clone DKEY-52K1 in linkage group 13.    46   1.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ534951_1(AJ534951|pid:none) Dictyostelium discoideum mRNA for ...   108   1e-22
BT045643_1(BT045643|pid:none) Salmo salar clone ssal-rgf-527-212...    52   2e-05
AF069298_14(AF069298|pid:none) Arabidopsis thaliana BAC T14P8.  ...    52   2e-05
(Q11207) RecName: Full=Poly [ADP-ribose] polymerase 2;          ...    52   2e-05
BT044952_1(BT044952|pid:none) Salmo salar clone ssal-rgf-508-136...    51   3e-05
(P31669) RecName: Full=Poly [ADP-ribose] polymerase;          Sh...    51   3e-05
BC045935_1(BC045935|pid:none) Danio rerio poly (ADP-ribose) poly...    49   1e-04
(P26446) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    49   2e-04
AX008896_1(AX008896|pid:none) Sequence 5 from Patent WO9964572. ...    49   2e-04
AL050034_1(AL050034|pid:none) Homo sapiens mRNA; cDNA DKFZp566G0...    49   2e-04

 psg: 0.68  gvh: 0.22  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for VHE539 is nuc

>VHE539F.Seq
AAAAAGATTCTCAAGGAATTCACCGTGTTTATACTTCTTATGGTAGAACTGATGGACCAA
AAACTTTAGAAGTTAGATATGTTGATAATTTAGAAGATGGTATTGATCTTTATTCAAGTA
TTTATAATGAAAAAACAAGTGATAAAAAAGGTTATAAACCAGTTAAATTGGATTCATCAT
CAGTTAGTAGTTCAACTTCAACAGAATCATTAATTACAGCTGATAGTCAATTAGAACCAT
TAATAAAGACATTGGTTGAAAATCTTTATGTTGAAGCAACCACTCAATTGACAAATAGTT
TTTCAGTTACAATCACTGAACGTGGTATTGAAACACCATTGGGTGTCTTATCAATGGAAC
AAGTTGAAAATGGTGAACTTGTTTTGAAAAAAATCAATACCTATTTGAATGGTACAACCA
ATCCATCATCAGTAGAGTTGGAGAAATTAAGTTCAGAATTTTTCACAATTATTCCACATA
AACTTGGTAGAGGTTCAGATGTTGTCTCAAAGAATACCATTAGAAATTTGGATCAATTGA
ATACCAAATTCGAATTACTTCAATTAATGAAAGATTTATTGGTGGTTAAAGTTTCAGGTA
CTGGTAAACATGCACTCGATATGAAATATCGTGCATTAAANNNNNNNNNN