>VHE535 (VHE535Q) /CSM/VH/VHE5-B/VHE535Q.Seq.d/
XXXXXXXXXXTTCAAGGTAATATAGAGTATAGAAATATTGGATTNTCTTATCCATCACGT
CCAGATGTTAAAATTTTCAATAATTTCAATTTAACCATTAAAAAAGGTACAACCGTTGCA
TTGGTTGGTGATAGTGGTGGTGGTAAATCTTCAGTGATTGGTTTATTAGAACGTTTCTAT
GATCCAGATGAAGGTGAAGTTTATTTAGATGGTACAAATATTAAAGAGATTAATATTCAT
TCACTAAGAAGAAATATTGGTTTAGTATCACAAGAACCAGTGTTATTTGCAAATTCAATC
GCTGAAAATATACGTTATGGTAATGAAAATGCAACTATGGATCAAATTATTGAAGCTTGT
AAAACCGCAAATGCTCATGATTTCATTAGTGCTTTACCAGAGGGTTATGATACTCAAGTT
GGTGAAAAAGGTGTTCAAATGTCTGGTGGTCAAAAACAACGTATTGCAATTGCTCGTGCA
ATGATTAAAGATCCAAAGATTCTATTATTAGATGAGGCCACATCGGCTTTAGATTCTCAA
AATGAATTATTAGTACAACAATCAATTGAAAAATTAATGATTGGTCGTACCACAATTGTA
ATTGNTCATCGTTTATCAACAATTCAAGATGC

---QGNIEYRNIGXSYPSRPDVKIFNNFNLTIKKGTTVALVGDSGGGKSSVIGLLERFYD
PDEGEVYLDGTNIKEINIHSLRRNIGLVSQEPVLFANSIAENIRYGNENATMDQIIEACK
TANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAIARAMIKDPKILLLDEATSALDSQN
ELLVQQSIEKLMIGRTTIVIXHRLSTIQD

Frame A:
---sr*yrv*kywixlsitsrc*nfq*fqfnh*krynrcigw**www*ifsdwfirtfl*
sr*r*slfrwyky*rd*ysftkkkywfsitrtsvickfnr*kytlw**kcnygsny*sl*
nrkcs*fh*cftrgl*yssw*krcsnvwwskttycncscnd*rskdsiir*ghigfrfsk
*iisttin*kindwsyhncnxssfinnsrc


Frame B:
---QGNIEYRNIGXSYPSRPDVKIFNNFNLTIKKGTTVALVGDSGGGKSSVIGLLERFYD
PDEGEVYLDGTNIKEINIHSLRRNIGLVSQEPVLFANSIAENIRYGNENATMDQIIEACK
TANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAIARAMIKDPKILLLDEATSALDSQN
ELLVQQSIEKLMIGRTTIVIXHRLSTIQD


Frame C:
---kvi*sieildxlihhvqmlkfsiisi*plkkvqplhwlvivvvvnlq*lvy*nvsmi
qmkvkfi*mvqilkrlifih*eeilv*yhknqcylqiqslkiyvmvmkmqlwikllklvk
pqmlmislvlyqrvmilklvkkvfkclvvknnvlqllvq*lkiqrfyy*mrphrl*ilkm
ny*ynnqlkn**lvvpql*lxivyqqfkm

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE535 (VHE535Q) /CSM/VH/VHE5-B/VHE535Q.Seq.d/                       1221   0.0
VHO795 (VHO795Q) /CSM/VH/VHO7-D/VHO795Q.Seq.d/                       1201   0.0
CHS252 (CHS252Q) /CSM/CH/CHS2-C/CHS252Q.Seq.d/                       1176   0.0
VHH755 (VHH755Q) /CSM/VH/VHH7-C/VHH755Q.Seq.d/                        940   0.0
AHB224 (AHB224Q) /CSM/AH/AHB2-A/AHB224Q.Seq.d/                        934   0.0
CHE875 (CHE875Q) /CSM/CH/CHE8-D/CHE875Q.Seq.d/                        787   0.0
CHK485 (CHK485Q) /CSM/CH/CHK4-D/CHK485Q.Seq.d/                        595   e-169
AHJ254 (AHJ254Q) /CSM/AH/AHJ2-C/AHJ254Q.Seq.d/                        585   e-166
VHC325 (VHC325Q) /CSM/VH/VHC3-B/VHC325Q.Seq.d/                        347   1e-94
VHI359 (VHI359Q) /CSM/VH/VHI3-C/VHI359Q.Seq.d/                        119   5e-26

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF466305|AF466305.1 Dictyostelium discoideum ABC transporter AbcB2 (abcB2) gene, complete cds.  1221   0.0    1
AF466306|AF466306.1 Dictyostelium discoideum ABC transporter AbcB3 (abcB3) gene, complete cds.    96   2e-33  5
AF466304|AF466304.1 Dictyostelium discoideum ABC transporter AbcB1 (abcB1) gene, complete cds.   105   8e-33  5
AF466307|AF466307.2 Dictyostelium discoideum ABC transporter AbcB4 (abcB4) gene, complete cds.    80   5e-30  5
L26287|L26287.1 Schistosoma mansoni SMDR2 gene, complete cds.      52   6e-13  4
BQ622139|BQ622139.1 fch1c.pk004.i5 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    62   7e-13  2
CZ539774|CZ539774.1 SRAA-aad27f12.b1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    44   3e-09  4
AM658553|AM658553.1 Entamoeba moshkovskii FIC GSS, clone mosh081a04.q1k.    42   1e-08  3
DY892500|DY892500.1 CeleSEQ11042 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ11042, mRNA sequence.    70   2e-08  2
BJ757245|BJ757245.1 Caenorhabditis elegans cDNA clone:yk1499f09 : 5' end.    54   6e-08  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF466305_1(AF466305|pid:none) Dictyostelium discoideum ABC trans...   399   e-110
EF521414_1(EF521414|pid:none) Mytilus californianus ABCB/p-glyco...   272   5e-72
(Q9LJX0) RecName: Full=Multidrug resistance protein 11; AltName:...   268   1e-70
AK117168_1(AK117168|pid:none) Arabidopsis thaliana At3g28860 mRN...   268   1e-70
AF540384_1(AF540384|pid:none) Arabidopsis thaliana MDR-like p-gl...   268   1e-70
AF466307_1(AF466307|pid:none) Dictyostelium discoideum ABC trans...   265   6e-70
AY582535_1(AY582535|pid:none) Rattus norvegicus multidrug resist...   263   3e-69
AK103526_1(AK103526|pid:none) Oryza sativa Japonica Group cDNA c...   262   7e-69
(Q9ZR72) RecName: Full=Multidrug resistance protein 1; AltName: ...   262   7e-69
AJ535059_1(AJ535059|pid:none) Oryza sativa (japonica cultivar-gr...   262   7e-69

 psg: 0.75  gvh: 0.43  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHE535 is cyt

>VHE535Z.Seq
NNNNNNNNNNTTCAAGGTAATATAGAGTATAGAAATATTGGATTNTCTTATCCATCACGT
CCAGATGTTAAAATTTTCAATAATTTCAATTTAACCATTAAAAAAGGTACAACCGTTGCA
TTGGTTGGTGATAGTGGTGGTGGTAAATCTTCAGTGATTGGTTTATTAGAACGTTTCTAT
GATCCAGATGAAGGTGAAGTTTATTTAGATGGTACAAATATTAAAGAGATTAATATTCAT
TCACTAAGAAGAAATATTGGTTTAGTATCACAAGAACCAGTGTTATTTGCAAATTCAATC
GCTGAAAATATACGTTATGGTAATGAAAATGCAACTATGGATCAAATTATTGAAGCTTGT
AAAACCGCAAATGCTCATGATTTCATTAGTGCTTTACCAGAGGGTTATGATACTCAAGTT
GGTGAAAAAGGTGTTCAAATGTCTGGTGGTCAAAAACAACGTATTGCAATTGCTCGTGCA
ATGATTAAAGATCCAAAGATTCTATTATTAGATGAGGCCACATCGGCTTTAGATTCTCAA
AATGAATTATTAGTACAACAATCAATTGAAAAATTAATGATTGGTCGTACCACAATTGTA
ATTGNTCATCGTTTATCAACAATTCAAGATGC