>VHE534 (VHE534Q) /CSM/VH/VHE5-B/VHE534Q.Seq.d/
GAGAATGGTATACCACAAATTCAATCAAAAAAAGATATTTCAAATCCAAAATATGTTGTA
ATGTTATCAAAACGTGTTGTGTCAGTATTATCAAATGGTAGTGATTTAAATGAACAATGG
GGTGTTGCAGCATTGAATTGGGCAACAAATTCACCAAATCAACGTTTAGCAATGAGATCA
TTTCAAATTTTACGTGGTTTAGAACCAACTACAACCATTGATTCCCTTACAGAGGTGATG
CAAACAATGGGTAAATATATTCAAAATAATTCAATTGAAAATTCATTATTTATTTCAGAA
ATTCAAGAAACGCTTCAAGTCATGATAAAATGTATTCATCCTAGTAAATTAATTTTATTC
CCACAAATATTTTGGGGTACAGTTGCAATGTTACATACTGATTTTGAAAATCATTTCATT
GGTGCCATCAAGTTGTTATCAATGTTATTGGATATCATAAACTTTAGTGACCGTGCAGTT
CAAAATGTTTTCTTGGCATCAATGCCAAAAGATTGGGAAAATTATCATGGTGTTCAACCA
TTGATTATCAAAGGTTTAATGTCTGTAAATACTGCACCCTATGCATTGGAATTXXXXXXX
XXX

ENGIPQIQSKKDISNPKYVVMLSKRVVSVLSNGSDLNEQWGVAALNWATNSPNQRLAMRS
FQILRGLEPTTTIDSLTEVMQTMGKYIQNNSIENSLFISEIQETLQVMIKCIHPSKLILF
PQIFWGTVAMLHTDFENHFIGAIKLLSMLLDIINFSDRAVQNVFLASMPKDWENYHGVQP
LIIKGLMSVNTAPYALE---

Frame A:
ENGIPQIQSKKDISNPKYVVMLSKRVVSVLSNGSDLNEQWGVAALNWATNSPNQRLAMRS
FQILRGLEPTTTIDSLTEVMQTMGKYIQNNSIENSLFISEIQETLQVMIKCIHPSKLILF
PQIFWGTVAMLHTDFENHFIGAIKLLSMLLDIINFSDRAVQNVFLASMPKDWENYHGVQP
LIIKGLMSVNTAPYALE---


Frame B:
rmvyhkfnqkkifqiqnml*cyqnvlcqyyqmvvi*mnngvlqh*igqqihqinv*q*dh
fkfyvv*nqlqpliplqr*ckqwvnifkiiqlkihylfqkfkkrfks**nvfilvn*fys
hkyfgvqlqcyililkiislvpsscyqcywis*tlvtvqfkmfswhqcqkigkiimvfnh
*lskv*cl*ilhpmhwn---


Frame C:
ewyttnsikkryfkskiccnviktccvsiikw**fk*tmgccsielgnkftkstfsneii
snftwfrtnynh*fpyrgdanng*iysk*fn*kfiiyfrnsrnasshdkmyss**infip
tnilgyscnvty*f*ksfhwchqvvinvigyhkl**pcsskcflginakrlgklswcsti
dyqrfnvckyctlcig---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE534 (VHE534Q) /CSM/VH/VHE5-B/VHE534Q.Seq.d/                       1134   0.0
AHE252 (AHE252Q) /CSM/AH/AHE2-C/AHE252Q.Seq.d/                        995   0.0
SHH274 (SHH274Q) /CSM/SH/SHH2-D/SHH274Q.Seq.d/                        878   0.0
AHF605 (AHF605Q) /CSM/AH/AHF6-A/AHF605Q.Seq.d/                        563   e-159
AHA814 (AHA814Q) /CSM/AH/AHA8-A/AHA814Q.Seq.d/                        289   2e-77
VHA777 (VHA777Q) /CSM/VH/VHA7-D/VHA777Q.Seq.d/                         36   0.59
VFN418 (VFN418Q) /CSM/VF/VFN4-A/VFN418Q.Seq.d/                         36   0.59
SSF272 (SSF272Q) /CSM/SS/SSF2-C/SSF272Q.Seq.d/                         36   0.59
SLD172 (SLD172Q) /CSM/SL/SLD1-C/SLD172Q.Seq.d/                         36   0.59
SHE426 (SHE426Q) /CSM/SH/SHE4-B/SHE426Q.Seq.d/                         36   0.59

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1110   0.0    2
AX510404|AX510404.1 Sequence 5099 from Patent WO0216655.           40   0.11   2
EK091205|EK091205.1 1092962001859 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061002046563 5', genomic survey sequence.    42   0.17   2
AC182673|AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.    36   0.24   6
L34770|L34770.1 Arabidopsis thaliana RNA polymerase II third largest subunit (RPB35.5A) gene, complete cds.    40   0.25   2
AC013328|AC013328.5 Homo sapiens chromosome 2 clone RP11-420J17 map 2, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   1.2    5
AC200009|AC200009.2 Sorex araneus clone SA_Ba-98A9, WORKING DRAFT SEQUENCE, 7 ordered pieces.    46   1.2    1
AC192051|AC192051.3 Sorex araneus clone SA_Ba-8G2, WORKING DRAFT SEQUENCE, 14 ordered pieces.    46   1.2    1
ED463209|ED463209.1 AUAC-aah45a09.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    46   1.2    1
ED293825|ED293825.1 AUAC-aag13g03.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    46   1.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_18(AC116305|pid:none) Dictyostelium discoideum chromoso...   393   e-108
AK118154_1(AK118154|pid:none) Arabidopsis thaliana At5g15680 mRN...   131   1e-29
AM270176_10(AM270176|pid:none) Aspergillus niger contig An08c021...   108   1e-22
AL807577_1(AL807577|pid:none) Aspergillus fumigatus BAC AFA12F2.      105   1e-21
AM920436_2090(AM920436|pid:none) Penicillium chrysogenum Wiscons...   104   2e-21
AP007157_465(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   101   1e-20
DQ116822_1(DQ116822|pid:none) Saccharomyces cerevisiae strain YJ...    97   3e-19
DQ116815_1(DQ116815|pid:none) Saccharomyces cerevisiae strain YJ...    97   3e-19
DQ116819_1(DQ116819|pid:none) Saccharomyces cerevisiae strain YJ...    97   3e-19
DQ116823_1(DQ116823|pid:none) Saccharomyces cerevisiae strain YJ...    97   5e-19

 psg: 0.57  gvh: 0.42  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHE534 is cyt

>VHE534F.Seq
GAGAATGGTATACCACAAATTCAATCAAAAAAAGATATTTCAAATCCAAAATATGTTGTA
ATGTTATCAAAACGTGTTGTGTCAGTATTATCAAATGGTAGTGATTTAAATGAACAATGG
GGTGTTGCAGCATTGAATTGGGCAACAAATTCACCAAATCAACGTTTAGCAATGAGATCA
TTTCAAATTTTACGTGGTTTAGAACCAACTACAACCATTGATTCCCTTACAGAGGTGATG
CAAACAATGGGTAAATATATTCAAAATAATTCAATTGAAAATTCATTATTTATTTCAGAA
ATTCAAGAAACGCTTCAAGTCATGATAAAATGTATTCATCCTAGTAAATTAATTTTATTC
CCACAAATATTTTGGGGTACAGTTGCAATGTTACATACTGATTTTGAAAATCATTTCATT
GGTGCCATCAAGTTGTTATCAATGTTATTGGATATCATAAACTTTAGTGACCGTGCAGTT
CAAAATGTTTTCTTGGCATCAATGCCAAAAGATTGGGAAAATTATCATGGTGTTCAACCA
TTGATTATCAAAGGTTTAATGTCTGTAAATACTGCACCCTATGCATTGGAATTNNNNNNN
NNN