VHE518
Library VH
(Link to library)
Clone ID VHE518
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHE518 (VHE518Q) /CSM/VH/VHE5-A/VHE518Q.Seq.d/
XXXXXXXXXXAAACATTTAGACGCAAAGAAACAATCAATCTATTGGGGTATCAATAAAGA
AGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGAAAAAGAAAATAAAAA
GTTAATGATAATCAACAAAACCGTATTAGATGTCGAATC
sequence update 2002. 9.10
Translated Amino Acid sequence
---HLDAKKQSIYWGINKEDLPSMTIDEFNNLVEKENKKLMIINKTVLDVE


Translated Amino Acid sequence (All Frames)
Frame A:
---ni*tqrnnqsigvsikkiyhq*qsmnliiwlkkkiks***stkpy*msn


Frame B:
---tfrrketinllgyq*rrftindnr*i**fg*krk*kvndnqqnrircri


Frame C:
---HLDAKKQSIYWGINKEDLPSMTIDEFNNLVEKENKKLMIINKTVLDVE


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI233 (VSI233Q) /CSM/VS/VSI2-B/VSI233Q.Seq.d/ 186 6e-47
VSA271 (VSA271Q) /CSM/VS/VSA2-C/VSA271Q.Seq.d/ 186 6e-47
VHQ458 (VHQ458Q) /CSM/VH/VHQ4-C/VHQ458Q.Seq.d/ 186 6e-47
VHQ401 (VHQ401Q) /CSM/VH/VHQ4-A/VHQ401Q.Seq.d/ 186 6e-47
VHP465 (VHP465Q) /CSM/VH/VHP4-C/VHP465Q.Seq.d/ 186 6e-47
VHP295 (VHP295Q) /CSM/VH/VHP2-D/VHP295Q.Seq.d/ 186 6e-47
VHP289 (VHP289Q) /CSM/VH/VHP2-D/VHP289Q.Seq.d/ 186 6e-47
VHP229 (VHP229Q) /CSM/VH/VHP2-B/VHP229Q.Seq.d/ 186 6e-47
VHO878 (VHO878Q) /CSM/VH/VHO8-D/VHO878Q.Seq.d/ 186 6e-47
VHO225 (VHO225Q) /CSM/VH/VHO2-B/VHO225Q.Seq.d/ 186 6e-47

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 186 7e-61 2
ER477695|ER477695.1 1093015246462 Global-Ocean-Sampling_GS-35-01-01-1P5KB marine metagenome genomic clone 1061002380537 3', genomic survey sequence. 44 1.1 1
ER425718|ER425718.1 1092963748950 Global-Ocean-Sampling_GS-35-01-01-1P5KB marine metagenome genomic clone 1061002380537 5', genomic survey sequence. 44 1.1 1
ER477695|ER477695.1 1093015246462 Global-Ocean-Sampling_GS-35-01-01-1P5KB marine metagenome genomic clone 1061002380537 3', genomic survey sequence. 44 1.1 1
ER425718|ER425718.1 1092963748950 Global-Ocean-Sampling_GS-35-01-01-1P5KB marine metagenome genomic clone 1061002380537 5', genomic survey sequence. 44 1.1 1
BH152735|BH152735.1 ENTPG09TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 34 2.2 2
AC141660|AC141660.1 Apis mellifera clone CH224-54J20, WORKING DRAFT SEQUENCE, 14 unordered pieces. 32 2.2 2
AC139990|AC139990.3 Rattus norvegicus clone CH230-134A14, WORKING DRAFT SEQUENCE, 49 unordered pieces. 42 4.5 1
AC130143|AC130143.4 Rattus norvegicus clone CH230-171A22, WORKING DRAFT SEQUENCE, 2 unordered pieces. 42 4.5 1
AC055770|AC055770.1 Homo sapiens clone RP11-20I15, LOW-PASS SEQUENCE SAMPLING. 42 4.5 1
dna update 2007. 8.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 102 5e-21
AY995173_1(AY995173|pid:none) Amylomyces rouxii delta-9 desatura... 39 0.075
AF085500_1(AF085500|pid:none) Mortierella alpina delta nine desa... 36 0.48
Y18553_1(Y18553|pid:none) Mortierella alpina ole1 gene for stear... 36 0.48
FN392322_259(FN392322|pid:none) Pichia pastoris GS115 chromosome... 33 4.1
FM992695_12(FM992695|pid:none) Candida dubliniensis CD36 chromos... 32 5.3
CU928179_693(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 32 5.3
AL033501_2(AL033501|pid:none) C.albicans cosmid Ca41C10. &T1822... 32 5.3
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 32 7.0
FM992688_770(FM992688|pid:none) Candida dubliniensis CD36 chromo... 32 7.0
protein update 2009. 6.30
PSORT

psg: 0.76 gvh: 0.06 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for VHE518 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHE518Z
3' end seq.
>VHE518Z.Seq
NNNNNNNNNNAAACATTTAGACGCAAAGAAACAATCAATCTATTGGGGTATCAATAAAGA
AGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGAAAAAGAAAATAAAAA
GTTAATGATAATCAACAAAACCGTATTAGATGTCGAATC
Length of 3' end seq. 159
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -