VHE503
Library VH
(Link to library)
Clone ID VHE503
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11371-1
Original site URL
Representative seq. ID VHE503P
(Link to Original site)
Representative DNA sequence
>VHE503 (VHE503Q) /CSM/VH/VHE5-A/VHE503Q.Seq.d/
AGTTCCCCTTTTCTCAATCATCAACTAAATCAATAATAAACAATTAATCAAAAATGACAA
TCTTTGATAGCGACGAAGAAGAGTTAGTTACTACTCTCAGTGATTTCGAACCACCAGTTC
AAATTGATACTTCATTCAATAAATTTATTGTAGTTGATAATATTCCAGTTGCACCAGAGG
CAAAACACGAGAAATTGAAATCTATTTTAGTTAAAATCTATCAAAATAGACCAGGTGCTG
AAGTTGTTGGTATTCATTTAGCATTAGATGCTCAAAGAAATACTAAAGGTTTTGCATTTA
TTGAATATTCAAAAAAAGAATCAGCAATTGATGCAGCAACTTCATTAAATAATTATCCAT
TAGATAAATCACATACATTAAAAGTTAATTTATTAGATGATTTTAGCAAATTTGCCAATT
TTGAAGAAACTTATAAACCACCAACTAGAGAAGATTTTAAACCAAAACCAAATTACAATC
AATGGTTATCAGATCCAAAAGCATTGAAAGGTTATGACCAATTTGTAACACGTTATGGTG
ATTATACAGATATTTGTTGGAATGAGATGCATGTTGGTAAACCAATGGTAGAGAAATCAT
CGGTTTCATTGACCTCATCATACGTTCAATGXXXXXXXXXXGTTTGTTAGTTTCTTTGAA
GTTCAAAAACCAAGTGTTAAACTCATTAGTAAATTAGAGAATCGTAAATTGAATACCATC
TTTTGGTCACCACGTGGTACTTTGGTATTATTGGCCAATTTGGGTGACACTGGTGAATTG
GAATTCTACAACACTCAAGACTGTGAATCTTATGGCACTCAAGAACATCTCCAATGTACT
GGTGTCGATTGGAATCCATCTGGTCGTTATGTTACCACCTTTGTTAGTCATTGGAAGGTT
CAAACCGATACTGGTTTCAACATTTGGTCATTCAATGGTGATCTCGTCTACTCTGTACTC
AAGGATCGTTTCTTCCAATTCAATTGGCGTCCAAGACCAAAATTCATGCTCACCAATAAA
GAAATCAATCAAATCAAACAAAACATCAAAAAATATCAAGAGAAATTCGATAAACAAGAT
GAAGATGATAATAAAGCCATTCAACATATTGAACAAA
sequence update 2002.10.25
Translated Amino Acid sequence
fpfsqsstksiinn*SKMTIFDSDEEELVTTLSDFEPPVQIDTSFNKFIVVDNIPVAPEA
KHEKLKSILVKIYQNRPGAEVVGIHLALDAQRNTKGFAFIEYSKKESAIDAATSLNNYPL
DKSHTLKVNLLDDFSKFANFEETYKPPTREDFKPKPNYNQWLSDPKALKGYDQFVTRYGD
YTDICWNEMHVGKPMVEKSSVSLTSSYVQ---

---FVSFFEVQKPSVKLISKLENRKLNTIFWSPRGTLVLLANLGDTGELEFYNTQDCESY
GTQEHLQCTGVDWNPSGRYVTTFVSHWKVQTDTGFNIWSFNGDLVYSVLKDRFFQFNWRP
RPKFMLTNKEINQIKQNIKKYQEKFDKQDEDDNKAIQHIEQ


Translated Amino Acid sequence (All Frames)
Frame A:
sspflnhqlnq**tinqk*qsliatkks*lllsvisnhqfklilhsinll*liifqlhqr
qntrn*nlf*lksikidqvlkllvfi*h*mlkeilkvlhllniqkknqqlmqqlh*iiih
*inhih*kliy*milanlpilkklinhqlekilnqnqitingyqiqkh*kvmtnl*hvmv
iiqifvgmrcmlvnqw*rnhrfh*phhtfn---

---vc*fl*ssktkc*th**ires*ieyhllvttwyfgiigqfg*hw*igilqhsrl*il
whsrtspmywcrlesiwslcyhlc*slegsnrywfqhlviqw*srllctqgsflpiqlas
ktkihahq*rnqsnqtkhqkisreir*tr*r***shsty*t

Frame B:
vplfsiin*innkqlikndnl**rrrrvsyysq*frttssn*yfiq*iycs**yssctrg
ktreieiyfs*nlsk*trc*scwysfsircskky*rfciy*ifkkrisn*csnfik*lsi
r*ityiks*fir*f*qicqf*rnl*ttn*rrf*tktklqsmvirsksierl*picntlw*
lyrylle*dacw*tngreiigfidliirsm---

---FVSFFEVQKPSVKLISKLENRKLNTIFWSPRGTLVLLANLGDTGELEFYNTQDCESY
GTQEHLQCTGVDWNPSGRYVTTFVSHWKVQTDTGFNIWSFNGDLVYSVLKDRFFQFNWRP
RPKFMLTNKEINQIKQNIKKYQEKFDKQDEDDNKAIQHIEQ

Frame C:
fpfsqsstksiinn*SKMTIFDSDEEELVTTLSDFEPPVQIDTSFNKFIVVDNIPVAPEA
KHEKLKSILVKIYQNRPGAEVVGIHLALDAQRNTKGFAFIEYSKKESAIDAATSLNNYPL
DKSHTLKVNLLDDFSKFANFEETYKPPTREDFKPKPNYNQWLSDPKALKGYDQFVTRYGD
YTDICWNEMHVGKPMVEKSSVSLTSSYVQ---

---llvslkfknqvlnslvn*rivn*ipsfghhvvlwyywpiwvtlvnwnsttlktvnlm
alknisnvlvsigihlvvmlppllvigrfkpilvstfghsmvisstlysrivssnsigvq
dqnscspikksiksnktsknikrnsinkmkmiikpfnilnk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE503 (VHE503Q) /CSM/VH/VHE5-A/VHE503Q.Seq.d/ 1875 0.0
SFJ772 (SFJ772Q) /CSM/SF/SFJ7-C/SFJ772Q.Seq.d/ 1209 0.0
CHE725 (CHE725Q) /CSM/CH/CHE7-B/CHE725Q.Seq.d/ 1209 0.0
SFE596 (SFE596Q) /CSM/SF/SFE5-D/SFE596Q.Seq.d/ 1203 0.0
VFK194 (VFK194Q) /CSM/VF/VFK1-D/VFK194Q.Seq.d/ 1168 0.0
VHG856 (VHG856Q) /CSM/VH/VHG8-C/VHG856Q.Seq.d/ 1158 0.0
SLC263 (SLC263Q) /CSM/SL/SLC2-C/SLC263Q.Seq.d/ 1156 0.0
VHF256 (VHF256Q) /CSM/VH/VHF2-C/VHF256Q.Seq.d/ 1152 0.0
VHE819 (VHE819Q) /CSM/VH/VHE8-A/VHE819Q.Seq.d/ 1152 0.0
VFA136 (VFA136Q) /CSM/VF/VFA1-B/VFA136Q.Seq.d/ 1134 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

DW105085|DW105085.1 CLRX2899.b1_E06.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNAclone CLRX2899, mRNA sequence. 54 0.009 1
DW104649|DW104649.1 CLRX2456.b1_P13.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX2456, mRNA sequence. 54 0.009 1
EH767656|EH767656.1 CNSM1411.b1_E18.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM1411, mRNA sequence. 54 0.009 1
EH763101|EH763101.1 CNSL9103.b1_M20.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL9103, mRNA sequence. 54 0.009 1
EH727277|EH727277.1 CNMM13714.b1_C22.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMM13714, mRNA sequence. 54 0.009 1
DY984193|DY984193.1 CLSS6772.b1_G14.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS6772, mRNA sequence. 54 0.009 1
DY968175|DY968175.1 CLSM19261.b1_I15.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM19261, mRNA sequence. 54 0.009 1
AC192179|AC192179.4 Pan troglodytes BAC clone CH251-347B7 from chromosome 7, complete sequence. 42 1.3 6
CJ461626|CJ461626.1 Macaca fascicularis mRNA, clone: QmoA-14582, 5' end, expressed in medulla oblongata. 46 2.3 1
CF416400| putative 40S ribosomal protein 20S protein - Oncorhynchus mykiss, mRNA sequence. 46 2.3 1
dna update 2007. 8.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF660343_1(EF660343|pid:none) Artemisia annua eukaryotic transla... 132 2e-29
AF255680_1(AF255680|pid:none) Arabidopsis thaliana eIF3b mRNA, c... 119 2e-25
BT002393_1(BT002393|pid:none) Arabidopsis thaliana eukaryotic tr... 119 2e-25
AC137830_32(AC137830|pid:none) Medicago truncatula clone mth2-33... 119 2e-25
(Q9C5Z1) RecName: Full=Eukaryotic translation initiation factor ... 116 2e-24
CR954215_188(CR954215|pid:none) Ostreococcus tauri strain OTTH05... 115 2e-24
(Q1HDZ5) RecName: Full=Eukaryotic translation initiation factor ... 115 2e-24
(Q4P6G4) RecName: Full=Eukaryotic translation initiation factor ... 107 5e-24
BT064159_1(BT064159|pid:none) Zea mays full-length cDNA clone ZM... 112 2e-23
(B0W562) RecName: Full=Eukaryotic translation initiation factor ... 108 3e-22
protein update 2009. 6.30
PSORT

psg: 0.75 gvh: 0.36 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.33
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHE503 is cyt

5' end seq. ID VHE503F
5' end seq.
>VHE503F.Seq
AGTTCCCCTTTTCTCAATCATCAACTAAATCAATAATAAACAATTAATCAAAAATGACAA
TCTTTGATAGCGACGAAGAAGAGTTAGTTACTACTCTCAGTGATTTCGAACCACCAGTTC
AAATTGATACTTCATTCAATAAATTTATTGTAGTTGATAATATTCCAGTTGCACCAGAGG
CAAAACACGAGAAATTGAAATCTATTTTAGTTAAAATCTATCAAAATAGACCAGGTGCTG
AAGTTGTTGGTATTCATTTAGCATTAGATGCTCAAAGAAATACTAAAGGTTTTGCATTTA
TTGAATATTCAAAAAAAGAATCAGCAATTGATGCAGCAACTTCATTAAATAATTATCCAT
TAGATAAATCACATACATTAAAAGTTAATTTATTAGATGATTTTAGCAAATTTGCCAATT
TTGAAGAAACTTATAAACCACCAACTAGAGAAGATTTTAAACCAAAACCAAATTACAATC
AATGGTTATCAGATCCAAAAGCATTGAAAGGTTATGACCAATTTGTAACACGTTATGGTG
ATTATACAGATATTTGTTGGAATGAGATGCATGTTGGTAAACCAATGGTAGAGAAATCAT
CGGTTTCATTGACCTCATCATACGTTCAATGNNNNNNNNNN
Length of 5' end seq. 641
3' end seq. ID VHE503Z
3' end seq.
>VHE503Z.Seq
NNNNNNNNNNGTTTGTTAGTTTCTTTGAAGTTCAAAAACCAAGTGTTAAACTCATTAGTA
AATTAGAGAATCGTAAATTGAATACCATCTTTTGGTCACCACGTGGTACTTTGGTATTAT
TGGCCAATTTGGGTGACACTGGTGAATTGGAATTCTACAACACTCAAGACTGTGAATCTT
ATGGCACTCAAGAACATCTCCAATGTACTGGTGTCGATTGGAATCCATCTGGTCGTTATG
TTACCACCTTTGTTAGTCATTGGAAGGTTCAAACCGATACTGGTTTCAACATTTGGTCAT
TCAATGGTGATCTCGTCTACTCTGTACTCAAGGATCGTTTCTTCCAATTCAATTGGCGTC
CAAGACCAAAATTCATGCTCACCAATAAAGAAATCAATCAAATCAAACAAAACATCAAAA
AATATCAAGAGAAATTCGATAAACAAGATGAAGATGATAATAAAGCCATTCAACATATTG
AACAAA
Length of 3' end seq. 486
Connected seq. ID VHE503P
Connected seq.
>VHE503P.Seq
AGTTCCCCTTTTCTCAATCATCAACTAAATCAATAATAAACAATTAATCAAAAATGACAA
TCTTTGATAGCGACGAAGAAGAGTTAGTTACTACTCTCAGTGATTTCGAACCACCAGTTC
AAATTGATACTTCATTCAATAAATTTATTGTAGTTGATAATATTCCAGTTGCACCAGAGG
CAAAACACGAGAAATTGAAATCTATTTTAGTTAAAATCTATCAAAATAGACCAGGTGCTG
AAGTTGTTGGTATTCATTTAGCATTAGATGCTCAAAGAAATACTAAAGGTTTTGCATTTA
TTGAATATTCAAAAAAAGAATCAGCAATTGATGCAGCAACTTCATTAAATAATTATCCAT
TAGATAAATCACATACATTAAAAGTTAATTTATTAGATGATTTTAGCAAATTTGCCAATT
TTGAAGAAACTTATAAACCACCAACTAGAGAAGATTTTAAACCAAAACCAAATTACAATC
AATGGTTATCAGATCCAAAAGCATTGAAAGGTTATGACCAATTTGTAACACGTTATGGTG
ATTATACAGATATTTGTTGGAATGAGATGCATGTTGGTAAACCAATGGTAGAGAAATCAT
CGGTTTCATTGACCTCATCATACGTTCAATG----------GTTTGTTAGTTTCTTTGAA
GTTCAAAAACCAAGTGTTAAACTCATTAGTAAATTAGAGAATCGTAAATTGAATACCATC
TTTTGGTCACCACGTGGTACTTTGGTATTATTGGCCAATTTGGGTGACACTGGTGAATTG
GAATTCTACAACACTCAAGACTGTGAATCTTATGGCACTCAAGAACATCTCCAATGTACT
GGTGTCGATTGGAATCCATCTGGTCGTTATGTTACCACCTTTGTTAGTCATTGGAAGGTT
CAAACCGATACTGGTTTCAACATTTGGTCATTCAATGGTGATCTCGTCTACTCTGTACTC
AAGGATCGTTTCTTCCAATTCAATTGGCGTCCAAGACCAAAATTCATGCTCACCAATAAA
GAAATCAATCAAATCAAACAAAACATCAAAAAATATCAAGAGAAATTCGATAAACAAGAT
GAAGATGATAATAAAGCCATTCAACATATTGAACAAA
Length of connected seq. 1107
Full length Seq ID -
Full length Seq. -
Length of full length seq. -