VHE502
Library VH
(Link to library)
Clone ID VHE502
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16438-1
Original site URL
Representative seq. ID VHE502P
(Link to Original site)
Representative DNA sequence
>VHE502 (VHE502Q) /CSM/VH/VHE5-A/VHE502Q.Seq.d/
TAGATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAA
AATCATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAA
AAGTATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTT
CTTTATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTG
ATGAATATATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCG
AATCAATTGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAACAGGCAT
TAGGTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTG
GTAATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATC
GTCATTTCCGTCATAGTGTTTTAGGTATTTTGGTTAATCTTCATTTAGCCCAAGAAAAAC
CAGATTATCTTAGTGTTGTTCAATGTTTAATCTTTTTAGAXXXXXXXXXXTAACTCCAAC
TTCTATCATTGGTCTCAACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTG
CAGACCATCACTCTTTGCTTATCCACNTGAAACCAAACCATCCACCACAAGCTCAACCAA
TAAAATTGAAACAGCCATCNTCTCNTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTC
CGCTATGAATATTGATCAAGATGTTGAAAAGAAAGAAAAAGAGGAGAAAGAAGCCAAAGA
AAAAGAAGCCAAAGAAAAGGAAGAAAAAGAAGCTGCCAAAGCCGAAGAAAAAGAACCACT
CTTTGAAAGAAAATCAAATCCTGCTCGTATCGTACCAAGACAATTACAATATGTTCAATT
TGATGATGCTCGTTATCAACCAATTAAAAAGAGTCCTGCCATTGGTATCGTTATGTTGAG
AGATTTAACTCCAAATGAACCAGAACAATTGGTTGTAAAAGAAAAACCAGAAACTAAACA
AGAAACTGTTGGAAATCAATCTGGTACTGCTACTGCTAC
sequence update 2002.10.25
Translated Amino Acid sequence
DSCVDEFWSEIASSSIDKIKSLSVNKQFPKHELASLVLSKVYYNLSDFPNSMEYALSAGS
LFNVLSKSEYIETLLYKFIDEYIKLRTSTNKDTVINPHLESIVMGMFDRCFKEGSYKQAL
GIAIEARRLDIIEKAISQSGNVNSMLSYCLHICNVSVNNRHFRHSVLGILVNLHLAQEKP
DYLSVVQCLIFL---

---TPTSIIGLNKNLEMPVFTFKSNCRPSLFAYPXETKPSTTSSTNKIETAIXSYSRKNK
LQSSRSAMNIDQDVEKKEKEEKEAKEKEAKEKEEKEAAKAEEKEPLFERKSNPARIVPRQ
LQYVQFDDARYQPIKKSPAIGIVMLRDLTPNEPEQLVVKEKPETKQETVGNQSGTATA


Translated Amino Acid sequence (All Frames)
Frame A:
*ihvlmnfgqklhhlqsik*nhyqsinnfqnmnlhh*fyqkyiti*visqiqwnmryqlv
lylmfyqrvntlkhfyinllmniln*ehpqiktllsihisnql*weclidvsrkdhinrh
*vlllkqed*i*lkkqfhnlvm*ivcslivftfvmfq*tivisvivf*vfwlifi*pkkn
qiilvlfnv*sf*---

---*lqllslvstktwkcqfslsnpiadhhsllihxkpnhppqaqpiklkqpssxtveri
nfkvlvpl*ilikmlkrkkkrrkkpkkkkpkkrkkkklpkpkkknhslkenqillvsyqd
nynmfnlmmlvinqlkrvlplvslc*ei*lqmnqnnwl*kknqklnkklleinlvllll

Frame B:
rfmc**ilvrnciifnr*nkiiisq*tiskt*tciisfiksilqfk*fpkfngicviswf
fi*cfike*ih*ntfi*iy**iy*iknihk*rhcyqstsrincngnv**mfqgrii*tgi
rycy*skkiryn*ksnftiw*ck*yalllsshl*cfskqssfps*cfryfg*ssfsprkt
rls*ccsmfnlfr---

---nsnfyhwsqqklgnasfhfqiqlqtitlclst*nqtihhklnq*n*nshxlxq*ke*
tskfsfryey*src*kerkrgersqrkrsqrkgrkrscqsrrkrttl*kkikscsyrtkt
iticsi**cslstn*keschwyryverfnsk*trtigckrktrn*trncwksiwycycy

Frame C:
DSCVDEFWSEIASSSIDKIKSLSVNKQFPKHELASLVLSKVYYNLSDFPNSMEYALSAGS
LFNVLSKSEYIETLLYKFIDEYIKLRTSTNKDTVINPHLESIVMGMFDRCFKEGSYKQAL
GIAIEARRLDIIEKAISQSGNVNSMLSYCLHICNVSVNNRHFRHSVLGILVNLHLAQEKP
DYLSVVQCLIFL---

---TPTSIIGLNKNLEMPVFTFKSNCRPSLFAYPXETKPSTTSSTNKIETAIXSYSRKNK
LQSSRSAMNIDQDVEKKEKEEKEAKEKEAKEKEEKEAAKAEEKEPLFERKSNPARIVPRQ
LQYVQFDDARYQPIKKSPAIGIVMLRDLTPNEPEQLVVKEKPETKQETVGNQSGTATA

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE502 (VHE502Q) /CSM/VH/VHE5-A/VHE502Q.Seq.d/ 1518 0.0
SHA542 (SHA542Q) /CSM/SH/SHA5-B/SHA542Q.Seq.d/ 1150 0.0
VHL642 (VHL642Q) /CSM/VH/VHL6-B/VHL642Q.Seq.d/ 1134 0.0
AHF309 (AHF309Q) /CSM/AH/AHF3-A/AHF309Q.Seq.d/ 1106 0.0
CHS110 (CHS110Q) /CSM/CH/CHS1-A/CHS110Q.Seq.d/ 1053 0.0
AHB468 (AHB468Q) /CSM/AH/AHB4-C/AHB468Q.Seq.d/ 1051 0.0
VHO270 (VHO270Q) /CSM/VH/VHO2-C/VHO270Q.Seq.d/ 1049 0.0
VHM583 (VHM583Q) /CSM/VH/VHM5-D/VHM583Q.Seq.d/ 1049 0.0
SHG852 (SHG852Q) /CSM/SH/SHG8-C/SHG852Q.Seq.d/ 1049 0.0
VHP539 (VHP539Q) /CSM/VH/VHP5-B/VHP539Q.Seq.d/ 1047 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

EC826598|EC826598.1 SME00003256 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence. 52 0.037 1
EC821651|EC821651.1 SME00005388 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence. 52 0.037 1
EC820433|EC820433.1 SME00003343 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence. 52 0.037 1
AC146874|AC146874.4 Xenopus tropicalis clone CH216-82D17, complete sequence. 42 0.090 5
CD080423|CD080423.2 MA3-9999U-M309-G11-U.B MA3-0001 Schistosoma mansoni cDNA clone MA3-9999U-M309-G11.B, mRNA sequence. 48 0.58 1
DX538842|DX538842.1 GH_MBb0050B20r GH_MBb Gossypium hirsutum genomic clone GH_MBb0050B20r, genomic survey sequence. 48 0.58 1
CG848001|CG848001.1 ZMMBBb0319G22.r ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0319G22 3', genomic survey sequence. 38 0.62 2
CO116454|CO116454.1 GR__Eb018L09.r GR__Eb Gossypium raimondii cDNA clone GR__Eb018L09 3', mRNA sequence. 38 0.62 2
EK010706|EK010706.1 1092955171269 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061001911560 3', genomic survey sequence. 30 1.6 4
EE076569|EE076569.1 S1G02409 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G02409, mRNA sequence. 36 2.3 2
dna update 2007. 8.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX571973_4(BX571973|pid:none) Zebrafish DNA sequence from clone ... 176 1e-42
BC045463_1(BC045463|pid:none) Danio rerio proteasome (prosome, m... 176 1e-42
AY242527_1(AY242527|pid:none) Arabidopsis thaliana 26S proteasom... 176 1e-42
AC003974_14(AC003974|pid:none) Arabidopsis thaliana chromosome 2... 176 2e-42
AY230830_1(AY230830|pid:none) Arabidopsis thaliana 26S proteasom... 174 5e-42
AM458338_1(AM458338|pid:none) Vitis vinifera contig VV78X165900.... 174 7e-42
CR762098_1(CR762098|pid:none) Xenopus tropicalis finished cDNA, ... 172 3e-41
DQ213424_1(DQ213424|pid:none) Taeniopygia guttata clone 0065P002... 171 3e-41
(Q5F418) RecName: Full=26S proteasome non-ATPase regulatory subu... 171 3e-41
(Q3TXS7) RecName: Full=26S proteasome non-ATPase regulatory subu... 171 4e-41
protein update 2009. 6.30
PSORT

psg: 0.75 gvh: 0.35 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHE502 is cyt

5' end seq. ID VHE502F
5' end seq.
>VHE502F.Seq
TAGATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAA
AATCATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAA
AAGTATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTT
CTTTATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTG
ATGAATATATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCG
AATCAATTGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAACAGGCAT
TAGGTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTG
GTAATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATC
GTCATTTCCGTCATAGTGTTTTAGGTATTTTGGTTAATCTTCATTTAGCCCAAGAAAAAC
CAGATTATCTTAGTGTTGTTCAATGTTTAATCTTTTTAGANNNNNNNNNN
Length of 5' end seq. 590
3' end seq. ID VHE502Z
3' end seq.
>VHE502Z.Seq
NNNNNNNNNNTAACTCCAACTTCTATCATTGGTCTCAACAAAAACTTGGAAATGCCAGTT
TTCACTTTCAAATCCAATTGCAGACCATCACTCTTTGCTTATCCACNTGAAACCAAACCA
TCCACCACAAGCTCAACCAATAAAATTGAAACAGCCATCNTCTCNTACAGTAGAAAGAAT
AAACTTCAAAGTTCTCGTTCCGCTATGAATATTGATCAAGATGTTGAAAAGAAAGAAAAA
GAGGAGAAAGAAGCCAAAGAAAAAGAAGCCAAAGAAAAGGAAGAAAAAGAAGCTGCCAAA
GCCGAAGAAAAAGAACCACTCTTTGAAAGAAAATCAAATCCTGCTCGTATCGTACCAAGA
CAATTACAATATGTTCAATTTGATGATGCTCGTTATCAACCAATTAAAAAGAGTCCTGCC
ATTGGTATCGTTATGTTGAGAGATTTAACTCCAAATGAACCAGAACAATTGGTTGTAAAA
GAAAAACCAGAAACTAAACAAGAAACTGTTGGAAATCAATCTGGTACTGCTACTGCTAC
Length of 3' end seq. 539
Connected seq. ID VHE502P
Connected seq.
>VHE502P.Seq
TAGATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAA
AATCATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAA
AAGTATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTT
CTTTATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTG
ATGAATATATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCG
AATCAATTGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAACAGGCAT
TAGGTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTG
GTAATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATC
GTCATTTCCGTCATAGTGTTTTAGGTATTTTGGTTAATCTTCATTTAGCCCAAGAAAAAC
CAGATTATCTTAGTGTTGTTCAATGTTTAATCTTTTTAGA----------TAACTCCAAC
TTCTATCATTGGTCTCAACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTG
CAGACCATCACTCTTTGCTTATCCACNTGAAACCAAACCATCCACCACAAGCTCAACCAA
TAAAATTGAAACAGCCATCNTCTCNTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTC
CGCTATGAATATTGATCAAGATGTTGAAAAGAAAGAAAAAGAGGAGAAAGAAGCCAAAGA
AAAAGAAGCCAAAGAAAAGGAAGAAAAAGAAGCTGCCAAAGCCGAAGAAAAAGAACCACT
CTTTGAAAGAAAATCAAATCCTGCTCGTATCGTACCAAGACAATTACAATATGTTCAATT
TGATGATGCTCGTTATCAACCAATTAAAAAGAGTCCTGCCATTGGTATCGTTATGTTGAG
AGATTTAACTCCAAATGAACCAGAACAATTGGTTGTAAAAGAAAAACCAGAAACTAAACA
AGAAACTGTTGGAAATCAATCTGGTACTGCTACTGCTAC
Length of connected seq. 1109
Full length Seq ID -
Full length Seq. -
Length of full length seq. -