VHE495
Library VH
(Link to library)
Clone ID VHE495
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11503-1
Original site URL
Representative seq. ID VHE495E
(Link to Original site)
Representative DNA sequence
>VHE495 (VHE495Q) /CSM/VH/VHE4-D/VHE495Q.Seq.d/
AAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTT
TCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCA
AATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGT
GGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTA
TTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCA
GAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAAT
AATGAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTNTGACA
TATGAACCAGAAGAAGAAAATAACCAAACTCAATCATGTTCAAGATGGCTCTTCTTTCAA
TATATGAATTTCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAAAG
CACTAAATTAAATAACATTTATTGTGGTTGTGAAGAATGTAAATATTTTCTTATATATGG
TTCTCAATTTATTCCCATCGTTAACCACACTTGCATTGATCCGACACTGACACCGACACC
AACAACCTCAACAACATCTACTACATTTGCTTCCACAACATCAACCACAACTACTTCAAC
AACATCAAACGCATCAGCTGGAACAACATCAACTACTTCAGCTGCAACAACACCAACCAC
ATCAGCTTTAACAACATCAACTACAACTACAACATCAACTACAACAACTATAACTACCTC
AACTACATTACCATCAACATCAACAACAACAAGTCCAATTGATAGTAAGACTAGGAATAT
TATCATTGTTACAGTTATTTTGGGCTTGATCTATAGCATGTGGTAGACTATGAACGTCAA
TTTGAAGATTATGCTGGATATGGTTAACTCAACTTCANATCTCATATCGTTTTTACA
sequence update 2002.10.27
Translated Amino Acid sequence
kkkqfsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGC
GFNNEPICTSLKDAVSRAFLLISNNSRVCIGIIGNINVTSEQITLGNYCGALWITSENIN
NENNNYTIIDGSSSTQPFXTYEPEEENNQTQSCSRWLFFQYMNFTSWDWK*frcefikkk
h*ik*hllwl*rm*ifsyiwfsiyshr*phlh*sdtdtdtnnlnniyyicfhninhnyfn
nikriswnninyfscnntnhisfnninynyninynnynylnyitininnnksn***d*ey
yhcysyfgldl*hvvdyerqfedyagyg*lnfxshivft


Translated Amino Acid sequence (All Frames)
Frame A:
kkkqfsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGC
GFNNEPICTSLKDAVSRAFLLISNNSRVCIGIIGNINVTSEQITLGNYCGALWITSENIN
NENNNYTIIDGSSSTQPFXTYEPEEENNQTQSCSRWLFFQYMNFTSWDWK*frcefikkk
h*ik*hllwl*rm*ifsyiwfsiyshr*phlh*sdtdtdtnnlnniyyicfhninhnyfn
nikriswnninyfscnntnhisfnninynyninynnynylnyitininnnksn***d*ey
yhcysyfgldl*hvvdyerqfedyagyg*lnfxshivft


Frame B:
kknsflckfini*lenqiifqfclqyf*klflwfqrryaqiqrfy*itts*rfiihqkdv
vlitsryahhskmllaehfy*yqiivvfvlvslvi*m*hqnklhwviivvpcgslqkisi
mkiiiiq*smdqaqpnhx*hmnqkkkitklnhvqdgssfni*isqvgignnsdvnlskks
tklnniycgceeckyfliygsqfipivnhtcidptltptpttsttsttfasttsttttst
tsnasagttsttsaattpttsalttstttttsttttittsttlpststttspidsktrni
iivtvilgliysmw*tmnvnlkimldmvnstsxlisfl


Frame C:
kktvffvnlliyd*kik*ffnfvcnifkncfcgfsaampkfndfiklqhpngl*firrmw
f**radmhitqrcc*qsifinik**sclywyhw*ykcnirtnyig*llwclvdhfrkyq*
*k**lynnrwiklnptixdi*trrrk*pnsimfkmallsiyefhklgleiiqm*iyqkka
ln*itfivvvknvniflymvlnlfpslttlalirh*hrhqqpqqhllhllpqhqpqllqq
hqthqleqhqllqlqqhqphql*qhqlqlqhqlqql*lpqlhyhqhqqqqvqlivrlgil
sllqlfwa*siacgrl*tsi*rlcwiwltqlxisyrfy


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE495 (VHE495Q) /CSM/VH/VHE4-D/VHE495Q.Seq.d/ 1253 0.0
SHD533 (SHD533Q) /CSM/SH/SHD5-B/SHD533Q.Seq.d/ 1253 0.0
AHK839 (AHK839Q) /CSM/AH/AHK8-B/AHK839Q.Seq.d/ 1253 0.0
AHF753 (AHF753Q) /CSM/AH/AHF7-C/AHF753Q.Seq.d/ 1253 0.0
AHA119 (AHA119Q) /CSM/AH/AHA1-A/AHA119Q.Seq.d/ 1253 0.0
SHC657 (SHC657Q) /CSM/SH/SHC6-C/SHC657Q.Seq.d/ 1247 0.0
AHK570 (AHK570Q) /CSM/AH/AHK5-C/AHK570Q.Seq.d/ 1247 0.0
AHG336 (AHG336Q) /CSM/AH/AHG3-B/AHG336Q.Seq.d/ 1247 0.0
AHC551 (AHC551Q) /CSM/AH/AHC5-C/AHC551Q.Seq.d/ 1247 0.0
AHC489 (AHC489Q) /CSM/AH/AHC4-D/AHC489Q.Seq.d/ 1247 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 36 6e-07 3
AK222438|AK222438.1 Ciona intestinalis mRNA for zinc finger protein, complete cds, clone: cieg097d04. 44 1e-04 2
CV428924|CV428924.1 EST02153 Atlantic salmon Lambda Zap Express heart cDNA library Salmo salar cDNA clone hr_004_h06 5' similar to desmin, mRNA sequence. 44 0.002 2
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 36 0.005 11
BX005250|BX005250.7 Zebrafish DNA sequence from clone DKEY-35H6 in linkage group 14. 44 0.006 2
CU019636|CU019636.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH73-196E10. 44 0.006 2
AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence. 38 0.006 2
CR376736|CR376736.5 Zebrafish DNA sequence from clone DKEYP-86G11 in linkage group 24. 54 0.009 1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 0.021 2
AC136124|AC136124.2 Rattus norvegicus clone CH230-257B2, WORKING DRAFT SEQUENCE, 6 unordered pieces. 40 0.021 2
dna update 2007. 8.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF020283_1(AF020283|pid:none) Dictyostelium discoideum DG2044 ge... 56 2e-06
CP000766_763(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 37 1.4
AE006914_723(AE006914|pid:none) Rickettsia conorii str. Malish 7... 35 5.5
CP001227_577(CP001227|pid:none) Rickettsia peacockii str. Rustic... 35 5.5

protein update 2009. 7.11
PSORT

psg: 0.99 gvh: 0.48 alm: 0.21 top: 0.27 tms: 0.07 mit: 0.47 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.45 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: mitochondrial
20.0 %: Golgi
12.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: extracellular, including cell wall

>> prediction for VHE495 is mit

5' end seq. ID VHE495F
5' end seq.
>VHE495F.Seq
AAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTT
TCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCA
AATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGT
GGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTA
TTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCA
GAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAAT
AATGAAAATAATAATTATACAATAATCGATGGATCANNNNNNNNNN
Length of 5' end seq. 406
3' end seq. ID VHE495Z
3' end seq.
>VHE495Z.Seq
NNNNNNNNNNGTGGATCACTTCAGAAAATATCAATAATGAAAATAATAATTATACAATAA
TCGAGGATCAAGCTCAACCCAACCATTTNTGACATATGAACCAGAAGAAGAAAATAACCA
AACTCAATCATGTTCAAGATGGCTCTTCTTTCAATATATGAATTTCACAAGTTGGGATTG
GAAATAATTCAGATGTGAATTTATCAAAAAAAAGCACTAAATTAAATAACATTTATTGTG
GTTGTGAAGAATGTAAATATTTTCTTATATATGGTTCTCAATTTATTCCCATCGTTAACC
ACACTTGCATTGATCCGACACTGACACCGACACCAACAACCTCAACAACATCTACTACAT
TTGCTTCCACAACATCAACCACAACTACTTCAACAACATCAAACGCATCAGCTGGAACAA
CATCAACTACTTCAGCTGCAACAACACCAACCACATCAGCTTTAACAACATCAACTACAA
CTACAACATCAACTACAACAACTATAACTACCTCAACTACATTACCATCAACATCAACAA
CAACAAGTCCAATTGATAGTAAGACTAGGAATATTATCATTGTTACAGTTATTTTGGGCT
TGATCTATAGCATGTGGTAGACTATGAACGTCAATTTGAAGATTATGCTGGATATGGTTA
ACTCAACTTCANATCTCATATCGTTTTTACA
Length of 3' end seq. 691
Connected seq. ID VHE495P
Connected seq.
>VHE495P.Seq
AAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTT
TCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCA
AATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGT
GGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTA
TTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCA
GAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAAT
AATGAAAATAATAATTATACAATAATCGATGGATCA----------GTGGATCACTTCAG
AAAATATCAATAATGAAAATAATAATTATACAATAATCGAGGATCAAGCTCAACCCAACC
ATTTNTGACATATGAACCAGAAGAAGAAAATAACCAAACTCAATCATGTTCAAGATGGCT
CTTCTTTCAATATATGAATTTCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTAT
CAAAAAAAAGCACTAAATTAAATAACATTTATTGTGGTTGTGAAGAATGTAAATATTTTC
TTATATATGGTTCTCAATTTATTCCCATCGTTAACCACACTTGCATTGATCCGACACTGA
CACCGACACCAACAACCTCAACAACATCTACTACATTTGCTTCCACAACATCAACCACAA
CTACTTCAACAACATCAAACGCATCAGCTGGAACAACATCAACTACTTCAGCTGCAACAA
CACCAACCACATCAGCTTTAACAACATCAACTACAACTACAACATCAACTACAACAACTA
TAACTACCTCAACTACATTACCATCAACATCAACAACAACAAGTCCAATTGATAGTAAGA
CTAGGAATATTATCATTGTTACAGTTATTTTGGGCTTGATCTATAGCATGTGGTAGACTA
TGAACGTCAATTTGAAGATTATGCTGGATATGGTTAACTCAACTTCANATCTCATATCGT
TTTTACA
Length of connected seq. 1077
Full length Seq ID VHE495E
Full length Seq.
>VHE495E.Seq
AAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATTTT
TCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCCCA
AATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGATGT
GGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTTTA
TTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACATCA
GAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCAAT
AATGAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTNTGACA
TATGAACCAGAAGAAGAAAATAACCAAACTCAATCATGTTCAAGATGGCTCTTCTTTCAA
TATATGAATTTCACAAGTTGGGATTGGAAATAATTCAGATGTGAATTTATCAAAAAAAAG
CACTAAATTAAATAACATTTATTGTGGTTGTGAAGAATGTAAATATTTTCTTATATATGG
TTCTCAATTTATTCCCATCGTTAACCACACTTGCATTGATCCGACACTGACACCGACACC
AACAACCTCAACAACATCTACTACATTTGCTTCCACAACATCAACCACAACTACTTCAAC
AACATCAAACGCATCAGCTGGAACAACATCAACTACTTCAGCTGCAACAACACCAACCAC
ATCAGCTTTAACAACATCAACTACAACTACAACATCAACTACAACAACTATAACTACCTC
AACTACATTACCATCAACATCAACAACAACAAGTCCAATTGATAGTAAGACTAGGAATAT
TATCATTGTTACAGTTATTTTGGGCTTGATCTATAGCATGTGGTAGACTATGAACGTCAA
TTTGAAGATTATGCTGGATATGGTTAACTCAACTTCANATCTCATATCGTTTTTACA
Length of full length seq. 1017