VHE440
Library VH
(Link to library)
Clone ID VHE440
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12103-1
Original site URL
Representative seq. ID VHE440P
(Link to Original site)
Representative DNA sequence
>VHE440 (VHE440Q) /CSM/VH/VHE4-B/VHE440Q.Seq.d/
AATGATGAAGATGAAATAAGGAATAATAAAATTTCATTTGGTGATAATATTAAAAGGGAA
TTTTTACATTTAAAATTATTATTAAAAAAGAATTTATTAGTCTCGATAAGATCATACTTT
TCAACTGGTATTGAAATTTTATCACCTATTGCTTTTATTATAATTTTATTTTTAATTTCT
CATTTTGGTTCTGGTAATGAAAATCCAATTGTAACATATAATCAAGAATTACCAATTTGT
AAATCATATGGTGAAAATAGATGTTTTAATATTATGTTTTCACCAAGTAATTCACCATCA
GCAATTGCAATTATGGAAATGTTAGGTGAAATTAATAATAATAGTATTTATAGTTATCCA
AGTGATACAGGTTATTTACCAGATTTAAACAATACTATTGGATTAAAAGGTGGTTTAATT
ATGATGAATTCAATAGAGGATTCATTTGAATTTGTATTAGCACGTCCAAATGTTACAATT
GCAGCAGTTGATTTCTTATCGATTCCACTTGGATTTCAAATTAATGGTGCACCACCCAAA
AATGAGCCATTGTTGAAAATGGATGGAAATTCATTGGAATTCAATGTGGTTGTAAATACA
ACATGCCCAAATATTTTAGCTACATGTCCGXXXXXXXXXXATNATATGCANGAGGTTGAG
ATTTTGGCCGACAAAATNGTCATTATGAATGAAGGTGTAATGGCATGCAATGGTAATTCA
TTNCGANTGAAATCAAAATATGGTGAAGGTTATTCAGTTAATATCGTAGCCAAATCGCCC
GAATCCATACCTGNNGTAGTNGAATTTGTNANTNTTTCAATTCCAGGTTGTAAATTTATG
AAGCAATCCGCTTGACAATTAAATTTTGGTTTCCCTGTAACAATTGATCNTCAAATCATT
GCAAACTTTTTCANNCAATTAGAAGAAATTACAAATGATCCNAATAATCAATTAATGAGA
GNTTGGTCTGTTTCACATTNNACATTGGATGATGNATTTTTAAAGGTTTCTCATTTAGCA
NANTTAAAANCACAATAAACTTATTTATATAAAATAANTTAATTAAAAAAAAATAAACAA
AAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence
NDEDEIRNNKISFGDNIKREFLHLKLLLKKNLLVSIRSYFSTGIEILSPIAFIIILFLIS
HFGSGNENPIVTYNQELPICKSYGENRCFNIMFSPSNSPSAIAIMEMLGEINNNSIYSYP
SDTGYLPDLNNTIGLKGGLIMMNSIEDSFEFVLARPNVTIAAVDFLSIPLGFQINGAPPK
NEPLLKMDGNSLEFNVVVNTTCPNILATCP---

---XMXEVEILADKXVIMNEGVMACNGNSXRXKSKYGEGYSVNIVAKSPESIPXVVEFVX
XSIPGCKFMKQSA*qlnfgfpvtidxqiianffxqleeitndpnnqlmrxwsvshxtldd
xflkvshlaxlkxq*tylykix*lkknkqk*


Translated Amino Acid sequence (All Frames)
Frame A:
NDEDEIRNNKISFGDNIKREFLHLKLLLKKNLLVSIRSYFSTGIEILSPIAFIIILFLIS
HFGSGNENPIVTYNQELPICKSYGENRCFNIMFSPSNSPSAIAIMEMLGEINNNSIYSYP
SDTGYLPDLNNTIGLKGGLIMMNSIEDSFEFVLARPNVTIAAVDFLSIPLGFQINGAPPK
NEPLLKMDGNSLEFNVVVNTTCPNILATCP---

---xicxrlrfwptkxsl*mkv*whamvihxx*nqnmvkviqlis*pnrpnpylx*xnlx
xfqfqvvnl*snpldn*ilvsl*qlixkslqtfsxn*kklqmixiin**exglfhixhwm
mxf*rfli*xx*xhnkliyik*xn*kkinknk

Frame B:
mmkmk*giikfhlviilkgnfyi*nyy*kriy*sr*dhtfqlvlkfyhlllll*fyf*fl
ilvlvmkiql*hiiknyqfvnhmvkidvlilcfhqvihhqqlqlwkc*vkliiivfiviq
viqviyqi*tilld*kvv*l**iq*rihlnly*hvqmlqlqqlisyrfhldfklmvhhpk
mshc*kwmeihwnsmwl*iqhaqif*lhv---

---xyaxg*dfgrqnxhye*rcngmqw*fixxeikiw*rlfs*yrsqiarihtxxsxicx
xfnsrl*iyeairltikfwfpcnn*ssnhcklfxxirrnyk*sx*sinexlvcftxxig*
xifkgfsfsxxkxtinlfi*nxlikkk*tki

Frame C:
**r*nke**nfiw**y*kgiftfkiiikkefisldkiilfnwy*nfitycfyynfifnfs
fwfw**ksncni*sritnl*iiw*k*mf*yyvftk*ftisncnygnvr*n****yl*lsk
*yrlftrfkqyywikrwfnydefnrgfi*icistskcyncss*flidstwisn*wcttqk
*aivengwkfigiqcgckynmpkyfsyms---

---XMXEVEILADKXVIMNEGVMACNGNSXRXKSKYGEGYSVNIVAKSPESIPXVVEFVX
XSIPGCKFMKQSA*qlnfgfpvtidxqiianffxqleeitndpnnqlmrxwsvshxtldd
xflkvshlaxlkxq*tylykix*lkknkqk*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE440 (VHE440Q) /CSM/VH/VHE4-B/VHE440Q.Seq.d/ 1518 0.0
VHP307 (VHP307Q) /CSM/VH/VHP3-A/VHP307Q.Seq.d/ 870 0.0
SHJ627 (SHJ627Q) /CSM/SH/SHJ6-B/SHJ627Q.Seq.d/ 773 0.0
VHG742 (VHG742Q) /CSM/VH/VHG7-B/VHG742Q.Seq.d/ 628 e-179
VHG781 (VHG781Q) /CSM/VH/VHG7-D/VHG781Q.Seq.d/ 523 e-147
VHK443 (VHK443Q) /CSM/VH/VHK4-B/VHK443Q.Seq.d/ 515 e-145
VHO885 (VHO885Q) /CSM/VH/VHO8-D/VHO885Q.Seq.d/ 511 e-144
VHH495 (VHH495Q) /CSM/VH/VHH4-D/VHH495Q.Seq.d/ 505 e-142
VHG774 (VHG774Q) /CSM/VH/VHG7-D/VHG774Q.Seq.d/ 505 e-142
VHH886 (VHH886Q) /CSM/VH/VHH8-D/VHH886Q.Seq.d/ 502 e-141

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF491005|AF491005.1 Dictyostelium discoideum ABC transporter ABCA.12 (ABCA.12) gene, partial cds; and ABC transporter ABCA.1 (ABCA.1) gene, complete cds. 839 0.0 6
U66526|U66526.2 Dictyostelium discoideum AbcA (abcA) mRNA, partial cds. 404 e-178 2
AF465310|AF465310.1 Dictyostelium discoideum ABC transporter ABCA.8 (abca8) gene, complete cds. 50 2e-09 3
AF465309|AF465309.1 Dictyostelium discoideum ABC transporter ABCA.7 (abca7) gene, complete cds. 50 8e-09 3
BU241422|BU241422.1 603321611F1 CSEQCHN33 Gallus gallus cDNA clone ChEST248e3 5', mRNA sequence. 52 0.034 1
CF446902|CF446902.1 EST683247 normalized cDNA library of onion Allium cepa cDNA clone ACAAS95, mRNA sequence. 50 0.14 1
AX348654|AX348654.1 Sequence 112 from Patent WO0202807. 44 0.30 3
AX345653|AX345653.1 Sequence 724 from Patent WO0200928. 44 0.30 3
AX344263|AX344263.1 Sequence 110 from Patent WO0200926. 44 0.30 3
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 0.32 8
dna update 2007. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8T5Z7) RecName: Full=ABC transporter A family member 1; AltNam... 394 e-108
T18288(T18288)ABC transport protein - slime mold (Dictyostelium ... 142 2e-32
CP000079_98(CP000079|pid:none) Leishmania major strain Friedlin ... 59 4e-07
AY243470_1(AY243470|pid:none) Mus musculus ATP-binding cassette ... 57 1e-06
AM494964_105(AM494964|pid:none) Leishmania braziliensis chromoso... 57 1e-06
AM494948_102(AM494948|pid:none) Leishmania braziliensis chromoso... 57 1e-06
BC168134_1(BC168134|pid:none) Xenopus tropicalis cDNA clone MGC:... 56 2e-06
AM502229_123(AM502229|pid:none) Leishmania infantum chromosome 11. 56 3e-06
AY028897_1(AY028897|pid:none) Homo sapiens ATP-binding cassette ... 56 3e-06
AK292592_1(AK292592|pid:none) Homo sapiens cDNA FLJ77193 partial... 56 3e-06
protein update 2009. 6.30
PSORT

psg: 0.75 gvh: 0.46 alm: 0.20 top: 0.50 tms: 0.07 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.12 leu: 0.23 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: nuclear
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VHE440 is cyt

5' end seq. ID VHE440F
5' end seq.
>VHE440F.Seq
AATGATGAAGATGAAATAAGGAATAATAAAATTTCATTTGGTGATAATATTAAAAGGGAA
TTTTTACATTTAAAATTATTATTAAAAAAGAATTTATTAGTCTCGATAAGATCATACTTT
TCAACTGGTATTGAAATTTTATCACCTATTGCTTTTATTATAATTTTATTTTTAATTTCT
CATTTTGGTTCTGGTAATGAAAATCCAATTGTAACATATAATCAAGAATTACCAATTTGT
AAATCATATGGTGAAAATAGATGTTTTAATATTATGTTTTCACCAAGTAATTCACCATCA
GCAATTGCAATTATGGAAATGTTAGGTGAAATTAATAATAATAGTATTTATAGTTATCCA
AGTGATACAGGTTATTTACCAGATTTAAACAATACTATTGGATTAAAAGGTGGTTTAATT
ATGATGAATTCAATAGAGGATTCATTTGAATTTGTATTAGCACGTCCAAATGTTACAATT
GCAGCAGTTGATTTCTTATCGATTCCACTTGGATTTCAAATTAATGGTGCACCACCCAAA
AATGAGCCATTGTTGAAAATGGATGGAAATTCATTGGAATTCAATGTGGTTGTAAATACA
ACATGCCCAAATATTTTAGCTACATGTCCGNNNNNNNNNN
Length of 5' end seq. 640
3' end seq. ID VHE440Z
3' end seq.
>VHE440Z.Seq
NNNNNNNNNNATNATATGCANGAGGTTGAGATTTTGGCCGACAAAATNGTCATTATGAAT
GAAGGTGTAATGGCATGCAATGGTAATTCATTNCGANTGAAATCAAAATATGGTGAAGGT
TATTCAGTTAATATCGTAGCCAAATCGCCCGAATCCATACCTGNNGTAGTNGAATTTGTN
ANTNTTTCAATTCCAGGTTGTAAATTTATGAAGCAATCCGCTTGACAATTAAATTTTGGT
TTCCCTGTAACAATTGATCNTCAAATCATTGCAAACTTTTTCANNCAATTAGAAGAAATT
ACAAATGATCCNAATAATCAATTAATGAGAGNTTGGTCTGTTTCACATTNNACATTGGAT
GATGNATTTTTAAAGGTTTCTCATTTAGCANANTTAAAANCACAATAAACTTATTTATAT
AAAATAANTTAATTAAAAAAAAATAAACAAAAATAAA
Length of 3' end seq. 457
Connected seq. ID VHE440P
Connected seq.
>VHE440P.Seq
AATGATGAAGATGAAATAAGGAATAATAAAATTTCATTTGGTGATAATATTAAAAGGGAA
TTTTTACATTTAAAATTATTATTAAAAAAGAATTTATTAGTCTCGATAAGATCATACTTT
TCAACTGGTATTGAAATTTTATCACCTATTGCTTTTATTATAATTTTATTTTTAATTTCT
CATTTTGGTTCTGGTAATGAAAATCCAATTGTAACATATAATCAAGAATTACCAATTTGT
AAATCATATGGTGAAAATAGATGTTTTAATATTATGTTTTCACCAAGTAATTCACCATCA
GCAATTGCAATTATGGAAATGTTAGGTGAAATTAATAATAATAGTATTTATAGTTATCCA
AGTGATACAGGTTATTTACCAGATTTAAACAATACTATTGGATTAAAAGGTGGTTTAATT
ATGATGAATTCAATAGAGGATTCATTTGAATTTGTATTAGCACGTCCAAATGTTACAATT
GCAGCAGTTGATTTCTTATCGATTCCACTTGGATTTCAAATTAATGGTGCACCACCCAAA
AATGAGCCATTGTTGAAAATGGATGGAAATTCATTGGAATTCAATGTGGTTGTAAATACA
ACATGCCCAAATATTTTAGCTACATGTCCG----------ATNATATGCANGAGGTTGAG
ATTTTGGCCGACAAAATNGTCATTATGAATGAAGGTGTAATGGCATGCAATGGTAATTCA
TTNCGANTGAAATCAAAATATGGTGAAGGTTATTCAGTTAATATCGTAGCCAAATCGCCC
GAATCCATACCTGNNGTAGTNGAATTTGTNANTNTTTCAATTCCAGGTTGTAAATTTATG
AAGCAATCCGCTTGACAATTAAATTTTGGTTTCCCTGTAACAATTGATCNTCAAATCATT
GCAAACTTTTTCANNCAATTAGAAGAAATTACAAATGATCCNAATAATCAATTAATGAGA
GNTTGGTCTGTTTCACATTNNACATTGGATGATGNATTTTTAAAGGTTTCTCATTTAGCA
NANTTAAAANCACAATAAACTTATTTATATAAAATAANTTAATTAAAAAAAAATAAACAA
AAATAAA
Length of connected seq. 1077
Full length Seq ID -
Full length Seq. -
Length of full length seq. -