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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE438
Library VH
(Link to library)
Clone ID VHE438
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHE438 (VHE438Q) /CSM/VH/VHE4-B/VHE438Q.Seq.d/
XXXXXXXXXXCGGTAGAGCAAACATTGACGACNTTAACGCCGATCCATGGGTTATGTGGC
AACATAAACCATTACATTAAAATCGCCACTTTTATGGGTCTCGTTTTCCCAACATTGGTA
GCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGTTATTTCTACTCTGGTGTACTTCGTCTC
GTTACAGTTCAACATTCCACATTCTTGGTCAATTCATTGGCTCATTATTTAGGTGACTCT
CCATACGATGATGAACATACTCCAAAGGATTCAGTTGTGACTGCTATATTAACATTTGGT
GAAGGTTATCATAACTTCCATCATGAATTCCCAAATGACTATAGAAACGCTTATAAATTC
TATCAATATGATCCAACTAAATGGTTGATCTCTGCAATGTATTATTTAGGCTTGGCTTAT
GATTTGAAAACTTTCTCCAAAAATGAAATTGAAAAAGGTATGATTCAAATGCACCAAAAA
CATTTAGACGCAAAGAAACAATCAATCTATTGGGGTATCAATAAAGAAGATTTACCATCA
ATGACAATCGATGAATTTAATAATTTGGTTGAAAAAGAAAATAAAAAGTTAATGATAATC
AACAAAACCGTATTAGATGTCG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---VEQTLTTLTPIHGLCGNINHYIKIATFMGLVFPTLVAGLGWGDWAGGYFYSGVLRLV
TVQHSTFLVNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNAYKFY
QYDPTKWLISAMYYLGLAYDLKTFSKNEIEKGMIQMHQKHLDAKKQSIYWGINKEDLPSM
TIDEFNNLVEKENKKLMIINKTVLDV
Translated Amino Acid sequence (All Frames) 
Frame A:
---graniddxnadpwvmwqhkplh*nrhfygsrfpnigswfrlg*lgwwlfllwctssr
ysstfhilgqfigslfr*lsir**tyskgfscdcyiniw*rls*lps*ipk*l*krl*il
si*sn*mvdlcnvlfrlgl*fenflqk*n*krydsnapktfrrketinllgyq*rrftin
dnr*i**fg*krk*kvndnqqnrirc


Frame B:
---VEQTLTTLTPIHGLCGNINHYIKIATFMGLVFPTLVAGLGWGDWAGGYFYSGVLRLV
TVQHSTFLVNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNAYKFY
QYDPTKWLISAMYYLGLAYDLKTFSKNEIEKGMIQMHQKHLDAKKQSIYWGINKEDLPSM
TIDEFNNLVEKENKKLMIINKTVLDV


Frame C:
---*skh*rx*rrsmgyvat*titlkspllwvsfsqhw*lv*vgviglvvistlvyfvsl
qfniphswsihwlii*vtlhtmmnilqriql*lly*hlvkviitsimnsqmtietlinsi
nmiqlng*slqcii*awlmi*klspkmklkkv*fkctkni*tqrnnqsigvsikkiyhq*
qsmnliiwlkkkiks***stkpy*ms
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE438 (VHE438Q) /CSM/VH/VHE4-B/VHE438Q.Seq.d/                       1106   0.0
VHP465 (VHP465Q) /CSM/VH/VHP4-C/VHP465Q.Seq.d/                       1104   0.0
VFM428 (VFM428Q) /CSM/VF/VFM4-B/VFM428Q.Seq.d/                       1090   0.0
VHK171 (VHK171Q) /CSM/VH/VHK1-C/VHK171Q.Seq.d/                       1088   0.0
VHD470 (VHD470Q) /CSM/VH/VHD4-C/VHD470Q.Seq.d/                       1086   0.0
VHB541 (VHB541Q) /CSM/VH/VHB5-B/VHB541Q.Seq.d/                       1086   0.0
VHQ458 (VHQ458Q) /CSM/VH/VHQ4-C/VHQ458Q.Seq.d/                       1080   0.0
VHD593 (VHD593Q) /CSM/VH/VHD5-D/VHD593Q.Seq.d/                       1074   0.0
VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/                       1041   0.0
VHE192 (VHE192Q) /CSM/VH/VHE1-D/VHE192Q.Seq.d/                       1033   0.0
own update 2002.12.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   995   0.0    3
DY886427|DY886427.1 CeleSEQ2079 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ2079, mRNA sequence.    50   2e-09  2
DY892961|DY892961.1 CeleSEQ12104 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ12104, mRNA sequence.    50   2e-09  2
DY895351|DY895351.1 CeleSEQ15152 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ15152, mRNA sequence.    48   2e-09  3
DY893926|DY893926.1 CeleSEQ13391 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ13391, mRNA sequence.    48   3e-09  3
DY886077|DY886077.1 CeleSEQ1581 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ1581, mRNA sequence.    48   3e-09  3
DY885896|DY885896.1 CeleSEQ991 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ991, mRNA sequence.    48   3e-09  3
AL033501|AL033501.1 C.albicans cosmid Ca41C10.                     72   2e-08  1
DY888809|DY888809.1 CeleSEQ6138 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ6138, mRNA sequence.    50   2e-08  2
AL396412|AL396412.1 T3 end of clone AR0AA030B05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    54   3e-08  2
dna update 2007. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos...   389   e-107
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear...   235   1e-63
AF085500_1(AF085500|pid:none) Mortierella alpina delta nine desa...   237   3e-63
Y18553_1(Y18553|pid:none) Mortierella alpina ole1 gene for stear...   236   7e-63
AB195980_1(AB195980|pid:none) Mortierella alpina gene for omega9...   233   3e-61
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9...   229   5e-61
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d...   224   3e-60
AP007162_283(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   225   7e-60
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   219   2e-58
AY995173_1(AY995173|pid:none) Amylomyces rouxii delta-9 desatura...   227   2e-58
protein update 2009. 6.30
PSORT 

 psg: 0.75  gvh: 0.61  alm: 0.32  top: 0.40  tms: 0.07  mit: 0.15  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.21  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHE438 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHE438Z
3' end seq. 
>VHE438Z.Seq
NNNNNNNNNNCGGTAGAGCAAACATTGACGACNTTAACGCCGATCCATGGGTTATGTGGC
AACATAAACCATTACATTAAAATCGCCACTTTTATGGGTCTCGTTTTCCCAACATTGGTA
GCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGTTATTTCTACTCTGGTGTACTTCGTCTC
GTTACAGTTCAACATTCCACATTCTTGGTCAATTCATTGGCTCATTATTTAGGTGACTCT
CCATACGATGATGAACATACTCCAAAGGATTCAGTTGTGACTGCTATATTAACATTTGGT
GAAGGTTATCATAACTTCCATCATGAATTCCCAAATGACTATAGAAACGCTTATAAATTC
TATCAATATGATCCAACTAAATGGTTGATCTCTGCAATGTATTATTTAGGCTTGGCTTAT
GATTTGAAAACTTTCTCCAAAAATGAAATTGAAAAAGGTATGATTCAAATGCACCAAAAA
CATTTAGACGCAAAGAAACAATCAATCTATTGGGGTATCAATAAAGAAGATTTACCATCA
ATGACAATCGATGAATTTAATAATTTGGTTGAAAAAGAAAATAAAAAGTTAATGATAATC
AACAAAACCGTATTAGATGTCG
Length of 3' end seq. 622
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -