VHE434
Library VH
(Link to library)
Clone ID VHE434
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16228-1
Original site URL
Representative seq. ID VHE434P
(Link to Original site)
Representative DNA sequence
>VHE434 (VHE434Q) /CSM/VH/VHE4-B/VHE434Q.Seq.d/
ATTTTAAAATTAAAAATAACCCATTAAAGTATCACTACATGTAAATAACAAATTTTATTT
GTATTTCAAAAAAATAATAATTAAAAAAAAAAAAAATAAAAAAAAAAXXXXXXXXXXTAA
TAAATGTGCAATTTTAATTATTGGTGTATTACCAGCACAAGTTCCACAATTATTAGAATC
AATTAAACATTTGGTTACCAAGGATCATATTATCATTTCAGTTGTATTAGGTATTACAAT
CAGTGGTATTAGATCCCATCTTCAACCAGATGTCTACACACCAATAGTAAGAGCCATGCC
AAATACCGCAATTCAATATTGTGAATCCATGACATGTATTGCCAACAAGAGTGACCATCC
AACTAAATCAGGTACTGCTGAACAAGAATTAGCCGATCAAAATGCATTGGAAGTCACTGA
AAAGATATTCAATTGTTGTGGTGAATGCATTACAATCTCTGAGGAAGCAATGGTATCTGC
ACCAGCTTTATGCTCATGTGGTACTGCTTTCTTTTGCAGAATTATTCGTGCTGCTGCAAG
TGCAGGTTGCGAAATTGGATTCCACGCTGAGGATGCTGTTAGAATTGCCGCCCAAACTGC
CAAAGGTGCTGCCATCATGTTATTGAAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
f*n*k*PIKVSLHVNNKFYLYFKKIIIKKKKNKKK---

---NKCAILIIGVLPAQVPQLLESIKHLVTKDHIIISVVLGITISGIRSHLQPDVYTPIV
RAMPNTAIQYCESMTCIANKSDHPTKSGTAEQELADQNALEVTEKIFNCCGECITISEEA
MVSAPALCSCGTAFFCRIIRAAASAGCEIGFHAEDAVRIAAQTAKGAAIMLLKN


Translated Amino Acid sequence (All Frames)
Frame A:
ilklkith*sittck*qilfvfqknnn*kkkk*kk---

---**mcnfnywcitstsstiirin*tfgyqgsyyhfsciryynqwy*ipsstrclhtns
kshakyrnsil*ihdmycqqe*psn*iryc*trisrskcigsh*kdiqllw*mhynl*gs
ngictsfmlmwycfllqnysccckcrlrnwipr*gcc*ncrpncqrcchhviek

Frame B:
f*n*k*PIKVSLHVNNKFYLYFKKIIIKKKKNKKK---

---NKCAILIIGVLPAQVPQLLESIKHLVTKDHIIISVVLGITISGIRSHLQPDVYTPIV
RAMPNTAIQYCESMTCIANKSDHPTKSGTAEQELADQNALEVTEKIFNCCGECITISEEA
MVSAPALCSCGTAFFCRIIRAAASAGCEIGFHAEDAVRIAAQTAKGAAIMLLKN

Frame C:
fkiknnplkyhym*itnficiskk**lkkkkikkk---

---invqf*llvyyqhkfhny*nqlniwlpriilsfqly*vlqsvvldpifnqmsthq**
epcqipqfnivnp*hvlptrvtiqlnqvllnkn*pikmhwkslkrysivvvnalqslrkq
wylhqlyahvvllsfaelfvllqvqvakldstlrmllelppklpkvlpscy*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ175 (VSJ175Q) /CSM/VS/VSJ1-D/VSJ175Q.Seq.d/ 1019 0.0
VHP477 (VHP477Q) /CSM/VH/VHP4-D/VHP477Q.Seq.d/ 1019 0.0
VHE434 (VHE434Q) /CSM/VH/VHE4-B/VHE434Q.Seq.d/ 1019 0.0
VFO670 (VFO670Q) /CSM/VF/VFO6-C/VFO670Q.Seq.d/ 1019 0.0
VFK243 (VFK243Q) /CSM/VF/VFK2-B/VFK243Q.Seq.d/ 1005 0.0
VFH593 (VFH593Q) /CSM/VF/VFH5-D/VFH593Q.Seq.d/ 1005 0.0
VFN356 (VFN356Q) /CSM/VF/VFN3-C/VFN356Q.Seq.d/ 995 0.0
VFM784 (VFM784Q) /CSM/VF/VFM7-D/VFM784Q.Seq.d/ 975 0.0
VFM195 (VFM195Q) /CSM/VF/VFM1-D/VFM195Q.Seq.d/ 950 0.0
SSC160 (SSC160Q) /CSM/SS/SSC1-C/SSC160Q.Seq.d/ 942 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL034555|AL034555.2 Human DNA sequence from clone RP1-134O19 on chromosome 1p36.11-36.33 Contains the 3' end of the gene for SMART/HDAC1 associated repressor protein (SHARP), the 3' end of the ZNF151 gene for zinc finger protein 151 (pHZ-67) and a CpG island. 38 0.18 2
AM425172|AM425172.2 Vitis vinifera contig VV78X218293.12, whole genome shotgun sequence. 38 0.19 2
AL773599|AL773599.11 Mouse DNA sequence from clone RP23-326I8 on chromosome 4. 42 1.7 3
AL954824|AL954824.2 Mouse DNA sequence from clone RP23-326I8 on chromosome 4. 42 1.7 3
AC155345|AC155345.1 Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH080L24, complete sequence. 32 2.4 2
EJ342593|EJ342593.1 1092963526337 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002328204 5', genomic survey sequence. 38 2.7 2
AL513472|AL513472.9 Human DNA sequence from clone RP11-271J19 on chromosome 6. 42 3.4 3
DR767663|DR767663.1 ILLUMIGEN_MCQ_60246 Katze_MMOV Macaca mulatta cDNA clone IBIUW:35740 5' similar to Bases 5 to 464 highly similar to human NOTCH2 (Hs.549056), mRNA sequence. 44 4.8 1
BY668263|BY668263.1 Mus musculus 14.5 days embryo df/df Rathke's pouches cDNA, RIKEN full-length enriched library, clone:K820001G14, 3' end partial sequence. 44 4.8 1
AC202907|AC202907.1 Zea mays chromosome UNKNOWN clone CH201-564C7; ZMMBBc0564C07, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces. 44 4.8 1
dna update 2007. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55E34) RecName: Full=Pyrroline-5-carboxylate reductase 2; ... 341 9e-93
CU207366_2079(CU207366|pid:none) Gramella forsetii KT0803 comple... 101 2e-20
AM398681_66(AM398681|pid:none) Flavobacterium psychrophilum JIP0... 97 4e-19
CP000685_838(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 89 1e-16
CP000139_567(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 89 1e-16
CP000140_2186(CP000140|pid:none) Parabacteroides distasonis ATCC... 87 5e-16
CP001099_1945(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,... 84 3e-15
AP009493_4141(AP009493|pid:none) Streptomyces griseus subsp. gri... 83 6e-15
AE006470_77(AE006470|pid:none) Chlorobium tepidum TLS, complete ... 82 2e-14
CP001078_3232(CP001078|pid:none) Clostridium botulinum E3 str. A... 81 2e-14
protein update 2009. 6.30
PSORT

psg: 0.70 gvh: 0.47 alm: 0.30 top: -0.07 tms: 0.07 mit: 0.27 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.31 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
20.0 %: mitochondrial
16.0 %: Golgi
16.0 %: nuclear
16.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall

>> prediction for VHE434 is cyt

5' end seq. ID VHE434F
5' end seq.
>VHE434F.Seq
ATTTTAAAATTAAAAATAACCCATTAAAGTATCACTACATGTAAATAACAAATTTTATTT
GTATTTCAAAAAAATAATAATTAAAAAAAAAAAAAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 117
3' end seq. ID VHE434Z
3' end seq.
>VHE434Z.Seq
NNNNNNNNNNTAATAAATGTGCAATTTTAATTATTGGTGTATTACCAGCACAAGTTCCAC
AATTATTAGAATCAATTAAACATTTGGTTACCAAGGATCATATTATCATTTCAGTTGTAT
TAGGTATTACAATCAGTGGTATTAGATCCCATCTTCAACCAGATGTCTACACACCAATAG
TAAGAGCCATGCCAAATACCGCAATTCAATATTGTGAATCCATGACATGTATTGCCAACA
AGAGTGACCATCCAACTAAATCAGGTACTGCTGAACAAGAATTAGCCGATCAAAATGCAT
TGGAAGTCACTGAAAAGATATTCAATTGTTGTGGTGAATGCATTACAATCTCTGAGGAAG
CAATGGTATCTGCACCAGCTTTATGCTCATGTGGTACTGCTTTCTTTTGCAGAATTATTC
GTGCTGCTGCAAGTGCAGGTTGCGAAATTGGATTCCACGCTGAGGATGCTGTTAGAATTG
CCGCCCAAACTGCCAAAGGTGCTGCCATCATGTTATTGAAAAAT
Length of 3' end seq. 524
Connected seq. ID VHE434P
Connected seq.
>VHE434P.Seq
ATTTTAAAATTAAAAATAACCCATTAAAGTATCACTACATGTAAATAACAAATTTTATTT
GTATTTCAAAAAAATAATAATTAAAAAAAAAAAAAATAAAAAAAAAA----------TAA
TAAATGTGCAATTTTAATTATTGGTGTATTACCAGCACAAGTTCCACAATTATTAGAATC
AATTAAACATTTGGTTACCAAGGATCATATTATCATTTCAGTTGTATTAGGTATTACAAT
CAGTGGTATTAGATCCCATCTTCAACCAGATGTCTACACACCAATAGTAAGAGCCATGCC
AAATACCGCAATTCAATATTGTGAATCCATGACATGTATTGCCAACAAGAGTGACCATCC
AACTAAATCAGGTACTGCTGAACAAGAATTAGCCGATCAAAATGCATTGGAAGTCACTGA
AAAGATATTCAATTGTTGTGGTGAATGCATTACAATCTCTGAGGAAGCAATGGTATCTGC
ACCAGCTTTATGCTCATGTGGTACTGCTTTCTTTTGCAGAATTATTCGTGCTGCTGCAAG
TGCAGGTTGCGAAATTGGATTCCACGCTGAGGATGCTGTTAGAATTGCCGCCCAAACTGC
CAAAGGTGCTGCCATCATGTTATTGAAAAAT
Length of connected seq. 621
Full length Seq ID -
Full length Seq. -
Length of full length seq. -