AFN712
Library AF
(Link to library)
Clone ID AFN712
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFN712Z
(Link to Original site)
Representative DNA sequence
>AFN712 (AFN712Q) /CSM/AF/AFN7-A/AFN712Q.Seq.d/
XXXXXXXXXXAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGA
TATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGC
CATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTT
CTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATT
TGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTAC
CACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCC
ATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAA
AGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGA
TATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCC
AATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAA
CGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTGAATCTAAAAAA
GATTCTTCTGCTAAACAGANAATTATAAATAATTAATAAATAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---KIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFS
FDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPW
CGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPI
SYEGQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILLLNRXL*iinky


Translated Amino Acid sequence (All Frames)
Frame A:
---rkslphkkvmpfsvgsi*rnshnkqliwvslvklfqpslliqlpiklvtismkkkps
hsipspngskmslvvkflhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwlnstlh
gaviarillqstin*vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmtkkiq
slmkvkemii*tllnsfkitlplnsnyhhlklmim*i*krffc*txnyk*lin


Frame B:
---enryltkr*crfllgryeeipttsnsygslw*scsshlc*fscq*sslqfr*krnll
iryrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*ilrsm
vrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**qrksn
ll*rskk*syelc*ihsr*rch*iqitiisn***ceskkdssakqxiinn**i


Frame C:
---KIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFS
FDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPW
CGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPI
SYEGQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILLLNRXL*iinky


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFN712 (AFN712Q) /CSM/AF/AFN7-A/AFN712Q.Seq.d/ 1368 0.0
AFK831 (AFK831Q) /CSM/AF/AFK8-B/AFK831Q.Seq.d/ 1368 0.0
AFN128 (AFN128Q) /CSM/AF/AFN1-B/AFN128Q.Seq.d/ 1362 0.0
AFM464 (AFM464Q) /CSM/AF/AFM4-C/AFM464Q.Seq.d/ 1362 0.0
AFM249 (AFM249Q) /CSM/AF/AFM2-C/AFM249Q.Seq.d/ 1362 0.0
AFM204 (AFM204Q) /CSM/AF/AFM2-A/AFM204Q.Seq.d/ 1362 0.0
AFK804 (AFK804Q) /CSM/AF/AFK8-A/AFK804Q.Seq.d/ 1362 0.0
AFM861 (AFM861Q) /CSM/AF/AFM8-C/AFM861Q.Seq.d/ 1356 0.0
AFM768 (AFM768Q) /CSM/AF/AFM7-C/AFM768Q.Seq.d/ 1356 0.0
AFM669 (AFM669Q) /CSM/AF/AFM6-C/AFM669Q.Seq.d/ 1356 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end, single read. 599 e-167 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CB176061|CB176061.1 pl17e07.y3 Ancylostoma ceylanicum adult Ancylostoma ceylanicum cDNA 5' similar to TR:O17908 O17908 H06O01.1 PROTEIN. [1] ;, mRNA sequence. 70 4e-08 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 4e-08 1
BM280519|BM280519.1 ki01h03.y1 Ascaris suum L4 pSPORT1 Zarlenga v1 Ascaris suum cDNA 5' similar to SW:ERP5_CAEEL Q11067 PROBABLE PROTEIN DISULFIDE ISOMERASE P5 PRECURSOR ;, mRNA sequence. 68 2e-07 1
AW255071|AW255071.1 ML1365 peppermint glandular trichome Mentha x piperita cDNA, mRNA sequence. 64 2e-06 1
BM315730|BM315730.1 fw64d09.y1 Sugano SJD adult male Danio rerio cDNA clone 5612584 5' similar to SW:ER60_HUMAN P30101 PROBABLE PROTEIN DISULFIDE ISOMERASE ER-60 PRECURSOR ;, mRNA sequence. 62 1e-05 1
BM308748|BM308748.1 sak49h10.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-6523 5' similar to TR:P93358 P93358 PROTEIN DISULFIDE-ISOMERASE PRECURSOR. ;, mRNA sequence. 60 4e-05 1
BU795021|S34275 protein disulfide-isomerase homolog precursor - fluke (Schistosoma mansoni), mRNA sequence. 60 4e-05 1
BM174369|PDA4_MOUSE PROTEIN DISULFIDE ISOMERASE A4 PRECURSOR (PROTEIN ERP-72) (ERP72), mRNA sequence. 60 4e-05 1
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 172 8e-42
(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 169 7e-41
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 167 2e-40
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 166 5e-40
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 162 7e-39
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 160 3e-38
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 154 2e-36
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 151 2e-35
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 150 3e-35
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p... 150 3e-35
protein update 2009. 4.25
PSORT

psg: 0.86 gvh: 0.36 alm: 0.43 top: 0.47 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for AFN712 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFN712Z
3' end seq.
>AFN712Z.Seq
----------AAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGA
TATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGC
CATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTT
CTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATT
TGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTAC
CACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCC
ATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAA
AGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGA
TATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCC
AATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAA
CGCTGCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTGAATCTAAAAAA
GATTCTTCTGCTAAACAGANAATTATAAATAATTAATAAATAT
Length of 3' end seq. 693
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -