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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE408
Library VH
(Link to library)
Clone ID VHE408
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16390-1
Original site URL
Representative seq. ID VHE408P
(Link to Original site)
Representative DNA sequence 
>VHE408 (VHE408Q) /CSM/VH/VHE4-A/VHE408Q.Seq.d/
AATTAAATAAAAGAAAAAGAAAATGAGATTATTATTATTATTAATTTTAATAATAACAAT
TAATTTTAGTTATGGTGTATTAACACCTAAAAATTTAGCAGGTGAAGCAAGTGAATTTGG
TTCATTTAATATTCCAAATCCAATGGATGTAGCACAAAGTAGTGATAGTTCATTATTTGG
TATTTCAATGACACAAAGCCAATTGAAAAATTCATTTGAATGGTCAGGAGTTGTACCAGT
TGATTCAGAAGAAGAATTTACATTAACATTCTTTTCAAGTTTTCCATTAAGTGAATTTAA
AGTTGAAGCATCACCAAAAACTTCATTATCATCTTCCAAATCAGAATCAGAACATAAATC
AAAATTCTATAAGGTGATTAAATCAATATATCAAACACCAACCGTTACCAATGGTTCATT
TGGTATTGATGGTGCAACAACTCCATCATTTAGTTTAACATGGGATAAACCAGTTGTTGG
AGATTGGAATGTTGTAATCACAGCCTCATCATCATTAAGAAAGAATGAAAAATTCCAAAA
GATGGTAGAAGATTCAACACCTCAATTGTTAATGTTGGTTCAAAATCCAAGTGATACTCA
TATCTACTCTTATGTATCATCATACAATAATTXXXXXXXXXXACTTGCCAATTTCGGTAG
CCAATATACCGATGGTTTTTCACTTGTTGCTCGTAGTCAAGGTGGTAACGCTGCTCTTCA
CCTCGTAACATTCTATTTCAGTGGACTTGATCTTTCTCAAAAACTTGAAGGTCGTGTCAT
TCAATCAATGGGTACTCCATACCAAGGTACTGCTCTCGCTGGTACTTGGGCTTCTATTGG
TAGTGCTGTAGGTGTTGGTTGTTCTGCAAATGATGATCTCACTGTTGATGGTGCCGCTTT
ATGGTTAAAATCAATTCCAGCAGATAAAAGAGCTTTAGTTTATTATACAACTACTCAATA
TAGTACTGGTTCTTTAATTAATTATTGTAATTTGGCTTCCAATGCAGTCTTAGGATGGCC
AAATGATGGTGTTGTTGATAATGAGCATACTCCACTCGAAGGTGGTGTATATTTAAATAA
CTTTAAAGACTGGTGTCACTCTGATGGTATGCACTCACCACAACAAACTACAAATACTGA
ATATAACAAAGAAATGAGTTCCAACTCTGTTTGGTAAACTACTTTGTATTATTTTTTTTT
CTCTACAATAATGTAATAAAATCGATTTATATTAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
ik*KKKKMRLLLLLILIITINFSYGVLTPKNLAGEASEFGSFNIPNPMDVAQSSDSSLFG
ISMTQSQLKNSFEWSGVVPVDSEEEFTLTFFSSFPLSEFKVEASPKTSLSSSKSESEHKS
KFYKVIKSIYQTPTVTNGSFGIDGATTPSFSLTWDKPVVGDWNVVITASSSLRKNEKFQK
MVEDSTPQLLMLVQNPSDTHIYSYVSSYNN---

---LANFGSQYTDGFSLVARSQGGNAALHLVTFYFSGLDLSQKLEGRVIQSMGTPYQGTA
LAGTWASIGSAVGVGCSANDDLTVDGAALWLKSIPADKRALVYYTTTQYSTGSLINYCNL
ASNAVLGWPNDGVVDNEHTPLEGGVYLNNFKDWCHSDGMHSPQQTTNTEYNKEMSSNSVW
*ttlyyfffstim**nrfiln
Translated Amino Acid sequence (All Frames) 
Frame A:
n*ikekeneiiiiinfnnnn*f*lwcint*kfsr*sk*iwfi*ysksngcstk***fiiw
yfndtkpiekfi*mvrscts*frrriyinilfkfsik*i*s*sitknfiiifqirirt*i
kil*gd*inisntnryqwfiwy*wcnnsii*fnmg*tscwrleccnhsliiikke*kipk
dgrrfntsivnvgsksk*ysylllciiiq*---

---tcqfr*piyrwfftccs*srw*rcssprnilfqwt*sfskt*rschsingysipryc
srwylgfyw*ccrcwlfck**shc*wcrfmvkinssr*ksfsllynysi*ywffn*ll*f
gfqcslrmak*wcc***aystrrwcifk*l*rlvsl*wyaltttnyky*i*qrnefqlcl
vnyfvlffflynnviksiyik

Frame B:
ik*KKKKMRLLLLLILIITINFSYGVLTPKNLAGEASEFGSFNIPNPMDVAQSSDSSLFG
ISMTQSQLKNSFEWSGVVPVDSEEEFTLTFFSSFPLSEFKVEASPKTSLSSSKSESEHKS
KFYKVIKSIYQTPTVTNGSFGIDGATTPSFSLTWDKPVVGDWNVVITASSSLRKNEKFQK
MVEDSTPQLLMLVQNPSDTHIYSYVSSYNN---

---LANFGSQYTDGFSLVARSQGGNAALHLVTFYFSGLDLSQKLEGRVIQSMGTPYQGTA
LAGTWASIGSAVGVGCSANDDLTVDGAALWLKSIPADKRALVYYTTTQYSTGSLINYCNL
ASNAVLGWPNDGVVDNEHTPLEGGVYLNNFKDWCHSDGMHSPQQTTNTEYNKEMSSNSVW
*ttlyyfffstim**nrfiln

Frame C:
lnkrkrk*dyyyy*f***qlilvmvy*hlki*qvkqvnlvhlifqiqwm*hkvvivhylv
fq*hkan*kihlngqelyqliqkknlh*hsfqvfh*vnlklkhhqklhyhlpnqnqninq
nsir*lnqyikhqplpmvhlvlmvqqlhhlv*hginqlleigml*sqphhh*ermknskr
w*kiqhlnc*cwfkiqvilistlmyhhtii---

---lpisvanipmvfhlllvvkvvtllfts*hsisvdliflknlkvvsfnqwvlhtkvll
slvlglllvvl*vlvvlqmmisllmvplyg*nqfqqikel*fiiqllnivlvl*liiviw
lpmqs*dgqmmvllimsilhskvvyi*itlktgvtlmvcthhnklqilnitkk*vptlfg
kllciiffslq*cnkidly*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL874 (VHL874Q) /CSM/VH/VHL8-D/VHL874Q.Seq.d/                       1126   0.0
VHQ437 (VHQ437Q) /CSM/VH/VHQ4-B/VHQ437Q.Seq.d/                       1126   0.0
VHQ285 (VHQ285Q) /CSM/VH/VHQ2-D/VHQ285Q.Seq.d/                       1126   0.0
VHP806 (VHP806Q) /CSM/VH/VHP8-A/VHP806Q.Seq.d/                       1126   0.0
VHP804 (VHP804Q) /CSM/VH/VHP8-A/VHP804Q.Seq.d/                       1126   0.0
VHP701 (VHP701Q) /CSM/VH/VHP7-A/VHP701Q.Seq.d/                       1126   0.0
VHP580 (VHP580Q) /CSM/VH/VHP5-D/VHP580Q.Seq.d/                       1126   0.0
VHP509 (VHP509Q) /CSM/VH/VHP5-A/VHP509Q.Seq.d/                       1126   0.0
VHP430 (VHP430Q) /CSM/VH/VHP4-B/VHP430Q.Seq.d/                       1126   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1080   0.0    1
Z11691|Z11691.1 Dictyostelium discoideum mRNA for Conditioned medium factor.   567   0.0    8
BX842599|BX842599.1 Neurospora crassa DNA linkage group II BAC clone B10A24.    48   0.61   1
AC087272|AC087272.5 Homo sapiens chromosome 8, clone RP11-139G7, complete sequence.    46   1.1    6
DY299389|DY299389.1 IC0AAA98BA06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.    46   2.4    1
DW054739|DW054739.1 CLLX7293.b1_J24.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX7293, mRNA sequence.    46   2.4    1
DW048907|DW048907.1 CLLX1655.b1_N05.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX1655, mRNA sequence.    46   2.4    1
DV208674|DV208674.1 0089P0115Z_D09_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0115Z_D09 3', mRNA sequence.    46   2.4    1
AC155136|AC155136.2 Bos taurus clone CH240-42A22, WORKING DRAFT SEQUENCE, 8 unordered pieces.    46   2.4    1
AC116711|AC116711.3 Mus musculus clone RP23-104I9, LOW-PASS SEQUENCE SAMPLING.    46   2.4    1
dna update 2007. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM920689_339(AM920689|pid:none) Xanthomonas campestris pv. campe...   160   7e-38
CP000050_316(CP000050|pid:none) Xanthomonas campestris pv. campe...   159   3e-37
AE008922_313(AE008922|pid:none) Xanthomonas campestris pv. campe...   159   3e-37
AM039952_339(AM039952|pid:none) Xanthomonas campestris pv. vesic...   158   3e-37
AB302139_1(AB302139|pid:none) Uncultured bacterium plaM8 gene fo...    37   1.5
AB302138_1(AB302138|pid:none) Uncultured bacterium plaM7 gene fo...    37   1.5
CP001034_767(CP001034|pid:none) Natranaerobius thermophilus JW/N...    37   1.9
AP007171_154(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    35   4.2
D50488_1(D50488|pid:none) Mycobacterium leprae gene for MPT51 li...    34   9.5
protein update 2009. 6.30
PSORT 

 psg: 1.00  gvh: 0.65  alm: 0.40  top: 0.07  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VHE408 is exc
5' end seq. ID VHE408F
5' end seq. 
>VHE408F.Seq
AATTAAATAAAAGAAAAAGAAAATGAGATTATTATTATTATTAATTTTAATAATAACAAT
TAATTTTAGTTATGGTGTATTAACACCTAAAAATTTAGCAGGTGAAGCAAGTGAATTTGG
TTCATTTAATATTCCAAATCCAATGGATGTAGCACAAAGTAGTGATAGTTCATTATTTGG
TATTTCAATGACACAAAGCCAATTGAAAAATTCATTTGAATGGTCAGGAGTTGTACCAGT
TGATTCAGAAGAAGAATTTACATTAACATTCTTTTCAAGTTTTCCATTAAGTGAATTTAA
AGTTGAAGCATCACCAAAAACTTCATTATCATCTTCCAAATCAGAATCAGAACATAAATC
AAAATTCTATAAGGTGATTAAATCAATATATCAAACACCAACCGTTACCAATGGTTCATT
TGGTATTGATGGTGCAACAACTCCATCATTTAGTTTAACATGGGATAAACCAGTTGTTGG
AGATTGGAATGTTGTAATCACAGCCTCATCATCATTAAGAAAGAATGAAAAATTCCAAAA
GATGGTAGAAGATTCAACACCTCAATTGTTAATGTTGGTTCAAAATCCAAGTGATACTCA
TATCTACTCTTATGTATCATCATACAATAATTNNNNNNNNNN
Length of 5' end seq. 642
3' end seq. ID VHE408Z
3' end seq. 
>VHE408Z.Seq
NNNNNNNNNNACTTGCCAATTTCGGTAGCCAATATACCGATGGTTTTTCACTTGTTGCTC
GTAGTCAAGGTGGTAACGCTGCTCTTCACCTCGTAACATTCTATTTCAGTGGACTTGATC
TTTCTCAAAAACTTGAAGGTCGTGTCATTCAATCAATGGGTACTCCATACCAAGGTACTG
CTCTCGCTGGTACTTGGGCTTCTATTGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAATG
ATGATCTCACTGTTGATGGTGCCGCTTTATGGTTAAAATCAATTCCAGCAGATAAAAGAG
CTTTAGTTTATTATACAACTACTCAATATAGTACTGGTTCTTTAATTAATTATTGTAATT
TGGCTTCCAATGCAGTCTTAGGATGGCCAAATGATGGTGTTGTTGATAATGAGCATACTC
CACTCGAAGGTGGTGTATATTTAAATAACTTTAAAGACTGGTGTCACTCTGATGGTATGC
ACTCACCACAACAAACTACAAATACTGAATATAACAAAGAAATGAGTTCCAACTCTGTTT
GGTAAACTACTTTGTATTATTTTTTTTTCTCTACAATAATGTAATAAAATCGATTTATAT
TAAAT
Length of 3' end seq. 605
Connected seq. ID VHE408P
Connected seq. 
>VHE408P.Seq
AATTAAATAAAAGAAAAAGAAAATGAGATTATTATTATTATTAATTTTAATAATAACAAT
TAATTTTAGTTATGGTGTATTAACACCTAAAAATTTAGCAGGTGAAGCAAGTGAATTTGG
TTCATTTAATATTCCAAATCCAATGGATGTAGCACAAAGTAGTGATAGTTCATTATTTGG
TATTTCAATGACACAAAGCCAATTGAAAAATTCATTTGAATGGTCAGGAGTTGTACCAGT
TGATTCAGAAGAAGAATTTACATTAACATTCTTTTCAAGTTTTCCATTAAGTGAATTTAA
AGTTGAAGCATCACCAAAAACTTCATTATCATCTTCCAAATCAGAATCAGAACATAAATC
AAAATTCTATAAGGTGATTAAATCAATATATCAAACACCAACCGTTACCAATGGTTCATT
TGGTATTGATGGTGCAACAACTCCATCATTTAGTTTAACATGGGATAAACCAGTTGTTGG
AGATTGGAATGTTGTAATCACAGCCTCATCATCATTAAGAAAGAATGAAAAATTCCAAAA
GATGGTAGAAGATTCAACACCTCAATTGTTAATGTTGGTTCAAAATCCAAGTGATACTCA
TATCTACTCTTATGTATCATCATACAATAATT----------ACTTGCCAATTTCGGTAG
CCAATATACCGATGGTTTTTCACTTGTTGCTCGTAGTCAAGGTGGTAACGCTGCTCTTCA
CCTCGTAACATTCTATTTCAGTGGACTTGATCTTTCTCAAAAACTTGAAGGTCGTGTCAT
TCAATCAATGGGTACTCCATACCAAGGTACTGCTCTCGCTGGTACTTGGGCTTCTATTGG
TAGTGCTGTAGGTGTTGGTTGTTCTGCAAATGATGATCTCACTGTTGATGGTGCCGCTTT
ATGGTTAAAATCAATTCCAGCAGATAAAAGAGCTTTAGTTTATTATACAACTACTCAATA
TAGTACTGGTTCTTTAATTAATTATTGTAATTTGGCTTCCAATGCAGTCTTAGGATGGCC
AAATGATGGTGTTGTTGATAATGAGCATACTCCACTCGAAGGTGGTGTATATTTAAATAA
CTTTAAAGACTGGTGTCACTCTGATGGTATGCACTCACCACAACAAACTACAAATACTGA
ATATAACAAAGAAATGAGTTCCAACTCTGTTTGGTAAACTACTTTGTATTATTTTTTTTT
CTCTACAATAATGTAATAAAATCGATTTATATTAAAT
Length of connected seq. 1227
Full length Seq ID -
Full length Seq. -
Length of full length seq. -