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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE368
Library VH
(Link to library)
Clone ID VHE368
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16497-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHE368 (VHE368Q) /CSM/VH/VHE3-C/VHE368Q.Seq.d/
XXXXXXXXXXTGGTAATTGTGATTTATCCGACACCGTTTGCCAAGATGGTAATGAATGTA
CTACCAATGTTTGTGAATCAAGTGATAGTGTCCTTGGTGTATGTACAAACTCAACAGTTG
AATGCGGTGCTACCAACACTGATAAATGTATCCAATTNTTCTTGTAATGAAGCCACCGGT
TGCCAACAATCAGCTGTCGTTTGTCCAGATGTTGGTAGTTGTTTAGTTGGTTATTGTGAT
AGTAAACAAGGTTGTCTCACCAAACCAAGATCTTGCGATACTGGTGTTTTCTGTTTAACT
GGTGAATGTATTGAAAATGCTGGTGGTTGTATCGTNTATGAAAAACGTTGTGATGCTGAT
AATGGAAGATGTCAACAAGGTGTATGTGTAAATAATACCGCCACTGAAGAAGGTTATTGT
AAATNTGAAGACTATGATCCATTACCATTCATTTGTAAAACTGGTGCTGTCGTTTCAACT
GCTGTCATTGCTGGTGTCACTGTCGCTGGCNGCTGTTGCACTTGGTGTTTTCATTTATGG
TGGTAAAAGAGGTTATGACTATTGGAAAGAATCAAGAAATGTTCAATTCAGTGGTTCAAA
TTCTAATCCACTTTATGAACAAAATCCAAATGGTTCTGGTGTAAATCCATTATATAATGA
TAATTCTGCATTATAAAATAAAATTATGTCTAT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---VIVIYPTPFAKMVMNVLPMFVNQVIVSLVYVQTQQLNAVLPTLINVSNXSCNEATGC
QQSAVVCPDVGSCLVGYCDSKQGCLTKPRSCDTGVFCLTGECIENAGGCIVYEKRCDADN
GRCQQGVCVNNTATEEGYCKXEDYDPLPFICKTGAVVSTAVIAGVTVAGXCCTWCFHLWW
*krl*llerikkcsiqwfkf*stl*tkskwfwcksii***fciik*nyvy
Translated Amino Acid sequence (All Frames) 
Frame A:
---gncdlsdtvcqdgnecttnvcessdsvlgvctnstvecgatntdkciqxfl**shrl
ptiscrlsrcw*lfswll***trlshqtkilrywcflfnw*my*kcwwlyrx*ktl*c**
wkmstrcmck*yrh*rrll*x*rl*sitihl*nwccrfncchcwchcrwxllhlvfsfmv
vkevmtigknqemfnsvvqilihfmnkiqmvlv*ihyimiilhykiklcl


Frame B:
---VIVIYPTPFAKMVMNVLPMFVNQVIVSLVYVQTQQLNAVLPTLINVSNXSCNEATGC
QQSAVVCPDVGSCLVGYCDSKQGCLTKPRSCDTGVFCLTGECIENAGGCIVYEKRCDADN
GRCQQGVCVNNTATEEGYCKXEDYDPLPFICKTGAVVSTAVIAGVTVAGXCCTWCFHLWW
*krl*llerikkcsiqwfkf*stl*tkskwfwcksii***fciik*nyvy


Frame C:
---*l*firhrlprw**myyqcl*ik**cpwcmyklns*mrcyqh**mypixlvmkppva
nnqlsfvqmlvvv*lvivivnkvvspnqdlailvfsv*lvnvlkmlvvvsxmknvvmlim
edvnkvyv*iipplkkvivnxktmihyhsfvklvlsfqllsllvslslaavalgvfiygg
krgydywkesrnvqfsgsnsnplyeqnpngsgvnplyndnsal*nkims
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE368 (VHE368Q) /CSM/VH/VHE3-C/VHE368Q.Seq.d/                       1330   0.0
VHQ221 (VHQ221Q) /CSM/VH/VHQ2-A/VHQ221Q.Seq.d/                       1298   0.0
VHP731 (VHP731Q) /CSM/VH/VHP7-B/VHP731Q.Seq.d/                       1298   0.0
VHI743 (VHI743Q) /CSM/VH/VHI7-B/VHI743Q.Seq.d/                       1298   0.0
VHD610 (VHD610Q) /CSM/VH/VHD6-A/VHD610Q.Seq.d/                       1298   0.0
VHB544 (VHB544Q) /CSM/VH/VHB5-B/VHB544Q.Seq.d/                       1298   0.0
VFM306 (VFM306Q) /CSM/VF/VFM3-A/VFM306Q.Seq.d/                       1298   0.0
VFG436 (VFG436Q) /CSM/VF/VFG4-B/VFG436Q.Seq.d/                       1298   0.0
VHP644 (VHP644Q) /CSM/VH/VHP6-B/VHP644Q.Seq.d/                       1292   0.0
VHJ217 (VHJ217Q) /CSM/VH/VHJ2-A/VHJ217Q.Seq.d/                       1292   0.0
own update 2003.10.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds.   682   0.0    3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    74   1e-14  9
ER665871|ER665871.1 SB_BBc223-A10.F SB_BBc Sorghum bicolor genomic 5', genomic survey sequence.    48   0.34   1
EJ281306|EJ281306.1 1095366054670 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005457241 5', genomic survey sequence.    36   0.92   2
AC140323|AC140323.3 Mus musculus BAC clone RP24-325G15 from 3, complete sequence.    46   1.3    1
AC131731|AC131731.4 Mus musculus BAC clone RP23-117K10 from 3, complete sequence.    46   1.3    1
AC192024|AC192024.2 Saimiri boliviensis boliviensis clone CH254-202J8, WORKING DRAFT SEQUENCE, 10 ordered pieces.    32   2.6    2
AC146652|AC146652.59 Pan troglodytes clone rp43-11l6, WORKING DRAFT SEQUENCE, 6 ordered pieces.    34   2.6    2
CR854885|CR854885.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-231O14.    42   4.8    2
AR550385|AR550385.1 Sequence 5516 from patent US 6747137.          44   5.3    1
dna update 2007. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   253   e-117
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                136   7e-54
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   154   2e-52
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                125   2e-41
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   125   3e-39
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 95   1e-29
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                101   4e-27
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    57   6e-13
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    56   8e-11
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    59   1e-09
protein update 2009. 6.30
PSORT 

 psg: 0.89  gvh: 0.50  alm: 0.30  top: 0.27  tms: 0.13  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHE368 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHE368Z
3' end seq. 
>VHE368Z.Seq
NNNNNNNNNNTGGTAATTGTGATTTATCCGACACCGTTTGCCAAGATGGTAATGAATGTA
CTACCAATGTTTGTGAATCAAGTGATAGTGTCCTTGGTGTATGTACAAACTCAACAGTTG
AATGCGGTGCTACCAACACTGATAAATGTATCCAATTNTTCTTGTAATGAAGCCACCGGT
TGCCAACAATCAGCTGTCGTTTGTCCAGATGTTGGTAGTTGTTTAGTTGGTTATTGTGAT
AGTAAACAAGGTTGTCTCACCAAACCAAGATCTTGCGATACTGGTGTTTTCTGTTTAACT
GGTGAATGTATTGAAAATGCTGGTGGTTGTATCGTNTATGAAAAACGTTGTGATGCTGAT
AATGGAAGATGTCAACAAGGTGTATGTGTAAATAATACCGCCACTGAAGAAGGTTATTGT
AAATNTGAAGACTATGATCCATTACCATTCATTTGTAAAACTGGTGCTGTCGTTTCAACT
GCTGTCATTGCTGGTGTCACTGTCGCTGGCNGCTGTTGCACTTGGTGTTTTCATTTATGG
TGGTAAAAGAGGTTATGACTATTGGAAAGAATCAAGAAATGTTCAATTCAGTGGTTCAAA
TTCTAATCCACTTTATGAACAAAATCCAAATGGTTCTGGTGTAAATCCATTATATAATGA
TAATTCTGCATTATAAAATAAAATTATGTCTAT
Length of 3' end seq. 693
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -