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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE361
Library VH
(Link to library)
Clone ID VHE361
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13618-1|Contig-U16140-1
Original site URL
Representative seq. ID VHE361P
(Link to Original site)
Representative DNA sequence 
>VHE361 (VHE361Q) /CSM/VH/VHE3-C/VHE361Q.Seq.d/
TGGCCGTCCACGATGCAAACTATATTAAAAAGTTGGAAACTAGTTTACCACCAGAGAATT
CAGAGTTTGAAACTCATTTGGAGAGTGATAAAAGTGGTGCTATGGTTACTGTTGCCTCTC
ATAAAGATTTCGAGGGTGATGATGATAACATTTACGATACCTTTGTTTCACATCGTTCCA
TTAAAGCCGCATTGAGAGCAAGTGGTTCAGTTTGTGCCGCCGTTGATTCAGTTAGTCGTT
CTGGTTATACTCGTGCTTTTTGTGCCATTCGTCCACCTGGTCATCATGCTGGTCGTTATG
GTAGAACAAGTGATGCGCCATCTCAAGGCTATTGTTTAATCAATAACGTTGCCATTGGTG
CCAAGTATGCTTCATTGACCGCCGGTTATAGTAGAATTGCTGTGGTGGATTTCGATGTTC
ATCATGGTAATGGAACTCAAGAGATCCTAAGTGGTGATGACAATTTCCTCTTCATTTCAA
TTCATGTATGTGATGAAAAACGTTACTTTTATCCTGGTACCGGTCAAGATGTTGGTGATA
TCGATGAGGTGTCGGGTCAATTCGATGGTAACATTTTAAATATTXXXXXXXXXXAGTAAT
AATCAATTAGAAAGACAAAANCAACTTCATCAACANCAACAACAAGCTCAACAAGCACAA
CAACAACAATCTCCACAACAATCTCAAAACTATTGAAAATACCTCAAATAACAAACTACA
ACTACAACTACTAGTACAACAACAACTTTATCAACTAGTGATAGTGAATCTAATAATAAT
ATTAATAACAATAATAATGATTATAATAATAATAACAATAATAATAGTAATAATAATAAT
AATAATAGTAATAACAATCAACCAACAAATTTTAATTCTTCAACATCTTCNCCAATTTTA
TCAGGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATAAATAAT
AATAATAATAATAATAGTAATAATAATAATAATATGAATACATCAAACCCAACCAATCAA
CAAAGTTCTGTAATTATTTCTGATGACATGGATGATGTACAAACAAATTNTAATCCACCA
AACCCACAATATCCACTCTCACCAAATTCTGTAAATAGAGGTAATAATCCAAGCAACATT
AGTATGTCAGGTGCTCAACGTTCAGCCCCTTTAATCATTTCACCAAAACCCTCAAATTCT
CCAAATTCACCATCAACTTCAAATAACAAGGAACTCCTCAAAATATTAATAATAGCGA
sequence update 2002.10.25
Translated Amino Acid sequence 
AVHDANYIKKLETSLPPENSEFETHLESDKSGAMVTVASHKDFEGDDDNIYDTFVSHRSI
KAALRASGSVCAAVDSVSRSGYTRAFCAIRPPGHHAGRYGRTSDAPSQGYCLINNVAIGA
KYASLTAGYSRIAVVDFDVHHGNGTQEILSGDDNFLFISIHVCDEKRYFYPGTGQDVGDI
DEVSGQFDGNILNI---

---SNNQLERQXQLHQXQQQAQQAQQQQSPQQSQNY*kylk*qttttttsttttlstsds
esnnninnnnndynnnnnnnsnnnnnnsnnnqptnfnsstsspilsgnnnnnnnnnnnnn
nninnnnnnnsnnnnnmntsnptnqqssviisddmddvqtnxnppnpqyplspnsvnrgn
npsnismsgaqrsapliispkpsnspnspstsnnkellkiliia
Translated Amino Acid sequence (All Frames) 
Frame A:
wpstmqtilkswklvyhqriqslkliwrvikvvlwlllplikisrvmmitftiplfhivp
lkph*eqvvqfvppliqlvvlvilvlfvpfvhlvimlvvmveqvmrhlkaiv*sitlplv
psmlh*ppvivellwwismfimvmelkrs*vvmtisssfqfmyvmknvtfilvpvkmlvi
smrcrvnsmvtf*i---

---SNNQLERQXQLHQXQQQAQQAQQQQSPQQSQNY*kylk*qttttttsttttlstsds
esnnninnnnndynnnnnnnsnnnnnnsnnnqptnfnsstsspilsgnnnnnnnnnnnnn
nninnnnnnnsnnnnnmntsnptnqqssviisddmddvqtnxnppnpqyplspnsvnrgn
npsnismsgaqrsapliispkpsnspnspstsnnkellkiliia

Frame B:
grprckly*kvgn*fttrefrv*nsfge**kwcygyccls*rfrg****hlrylcftsfh
*srieskwfslcrr*fs*sfwlyscflchsstwsscwslw*nk*caisrllfnq*rchwc
qvcfidrrl**nccggfrcssw*wnsrdpkw**qfplhfnscm**ktlllswyrsrcw*y
r*gvgsirw*hfky---

---viin*kdkxnfinxnnklnkhnnnnlhnnlktientsnnklqlqllvqqqlyqlviv
nliiilitiimiiiiitiiiviiiiiivitinqqililqhlxqfyqviiiiiiiiiiiii
ii*iiiiiiiviiiii*ihqtqpinkvl*lflmtwmmykqixihqthnihshqil*ievi
iqatlvcqvlnvqpl*sfhqnpqilqihhqlqitrnssky***r

Frame C:
AVHDANYIKKLETSLPPENSEFETHLESDKSGAMVTVASHKDFEGDDDNIYDTFVSHRSI
KAALRASGSVCAAVDSVSRSGYTRAFCAIRPPGHHAGRYGRTSDAPSQGYCLINNVAIGA
KYASLTAGYSRIAVVDFDVHHGNGTQEILSGDDNFLFISIHVCDEKRYFYPGTGQDVGDI
DEVSGQFDGNILNI---

---**sirktkxtsstxttsststtttisttiskllkipqitnynyny*ynnnfin****
i***y**q***l****q************qstnkf*ffnifxnfir**************
*yk************yeyikpnqstkfcnyf**hg*ctnkx*stkptistltkfck*r**
skqh*yvrcstfspfnhftktlkfskftinfk*qgtpqninns
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE361 (VHE361Q) /CSM/VH/VHE3-C/VHE361Q.Seq.d/                       1183   0.0
VFB294 (VFB294Q) /CSM/VF/VFB2-D/VFB294Q.Seq.d/                         60   9e-08
VFA122 (VFA122Q) /CSM/VF/VFA1-A/VFA122Q.Seq.d/                         60   9e-08
AFA577 (AFA577Q) /CSM/AF/AFA5-D/AFA577Q.Seq.d/                         60   9e-08
SSD176 (SSD176Q) /CSM/SS/SSD1-D/SSD176Q.Seq.d/                         44   0.005
SSB830 (SSB830Q) /CSM/SS/SSB8-B/SSB830Q.Seq.d/                         44   0.005
SLA748 (SLA748Q) /CSM/SL/SLA7-B/SLA748Q.Seq.d/                         44   0.005
SLA612 (SLA612Q) /CSM/SL/SLA6-A/SLA612Q.Seq.d/                         38   0.32
VHD545 (VHD545Q) /CSM/VH/VHD5-B/VHD545Q.Seq.d/                         36   1.3
VFM533 (VFM533Q) /CSM/VF/VFM5-B/VFM533Q.Seq.d/                         36   1.3
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    44   3e-10  3
ER349181|ER349181.1 1092345447869 Global-Ocean-Sampling_GS-34-01-01-1P5-1P8KB marine metagenome genomic clone 1061001498228 5', genomic survey sequence.    52   4e-06  2
EJ026108|EJ026108.1 1095454026127 Global-Ocean-Sampling_GS-26-01-01-1P3-1P6KB marine metagenome genomic clone 1061005637179 3', genomic survey sequence.    64   1e-05  1
EJ111056|EJ111056.1 1092343154647 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001366319 3', genomic survey sequence.    62   4e-05  1
EJ885776|EJ885776.1 1093018416833 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002762798 3', genomic survey sequence.    46   2e-04  2
EJ811345|EJ811345.1 1093017491397 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002762798 5', genomic survey sequence.    46   3e-04  2
EJ099176|EJ099176.1 1095462362120 Global-Ocean-Sampling_GS-26-01-01-1P3-1P6KB marine metagenome genomic clone 1061005751370 3', genomic survey sequence.    42   6e-04  3
EK561466|EK561466.1 1095521007675 Global-Ocean-Sampling_GS-32-01-01-1P3-1P6KB marine metagenome genomic clone 1061005977805 5', genomic survey sequence.    56   0.003  1
EK037063|EK037063.1 1092959470810 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061001841940 3', genomic survey sequence.    56   0.003  1
EJ890132|EJ890132.1 1093018438279 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002779817 5', genomic survey sequence.    56   0.003  1
dna update 2007. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X15) RecName: Full=Type-2 histone deacetylase 1;          EC...   157   6e-37
CP000613_544(CP000613|pid:none) Rhodospirillum centenum SW, comp...   119   2e-25
CP001052_2932(CP001052|pid:none) Burkholderia phytofirmans PsJN ...   117   7e-25
CU459003_3736(CU459003|pid:none) Magnetospirillum gryphiswaldens...   116   2e-24
CP000884_2378(CP000884|pid:none) Delftia acidovorans SPH-1, comp...   115   4e-24
CP000316_3092(CP000316|pid:none) Polaromonas sp. JS666, complete...   115   4e-24
AE017340_2286(AE017340|pid:none) Idiomarina loihiensis L2TR, com...   114   7e-24
CP000686_3108(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...   114   1e-23
AM910994_330(AM910994|pid:none) Plasmodium knowlesi strain H chr...   112   2e-23
AE017282_2358(AE017282|pid:none) Methylococcus capsulatus str. B...   112   2e-23
protein update 2009. 6.30
PSORT 

 psg: 0.66  gvh: 0.26  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VHE361 is nuc
5' end seq. ID VHE361F
5' end seq. 
>VHE361F.Seq
TGGCCGTCCACGATGCAAACTATATTAAAAAGTTGGAAACTAGTTTACCACCAGAGAATT
CAGAGTTTGAAACTCATTTGGAGAGTGATAAAAGTGGTGCTATGGTTACTGTTGCCTCTC
ATAAAGATTTCGAGGGTGATGATGATAACATTTACGATACCTTTGTTTCACATCGTTCCA
TTAAAGCCGCATTGAGAGCAAGTGGTTCAGTTTGTGCCGCCGTTGATTCAGTTAGTCGTT
CTGGTTATACTCGTGCTTTTTGTGCCATTCGTCCACCTGGTCATCATGCTGGTCGTTATG
GTAGAACAAGTGATGCGCCATCTCAAGGCTATTGTTTAATCAATAACGTTGCCATTGGTG
CCAAGTATGCTTCATTGACCGCCGGTTATAGTAGAATTGCTGTGGTGGATTTCGATGTTC
ATCATGGTAATGGAACTCAAGAGATCCTAAGTGGTGATGACAATTTCCTCTTCATTTCAA
TTCATGTATGTGATGAAAAACGTTACTTTTATCCTGGTACCGGTCAAGATGTTGGTGATA
TCGATGAGGTGTCGGGTCAATTCGATGGTAACATTTTAAATATTNNNNNNNNNN
Length of 5' end seq. 594
3' end seq. ID VHE361Z
3' end seq. 
>VHE361Z.Seq
NNNNNNNNNNAGTAATAATCAATTAGAAAGACAAAANCAACTTCATCAACANCAACAACA
AGCTCAACAAGCACAACAACAACAATCTCCACAACAATCTCAAAACTATTGAAAATACCT
CAAATAACAAACTACAACTACAACTACTAGTACAACAACAACTTTATCAACTAGTGATAG
TGAATCTAATAATAATATTAATAACAATAATAATGATTATAATAATAATAACAATAATAA
TAGTAATAATAATAATAATAATAGTAATAACAATCAACCAACAAATTTTAATTCTTCAAC
ATCTTCNCCAATTTTATCAGGTAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATATAAATAATAATAATAATAATAATAGTAATAATAATAATAATATGAATACATC
AAACCCAACCAATCAACAAAGTTCTGTAATTATTTCTGATGACATGGATGATGTACAAAC
AAATTNTAATCCACCAAACCCACAATATCCACTCTCACCAAATTCTGTAAATAGAGGTAA
TAATCCAAGCAACATTAGTATGTCAGGTGCTCAACGTTCAGCCCCTTTAATCATTTCACC
AAAACCCTCAAATTCTCCAAATTCACCATCAACTTCAAATAACAAGGAACTCCTCAAAAT
ATTAATAATAGCGA
Length of 3' end seq. 674
Connected seq. ID VHE361P
Connected seq. 
>VHE361P.Seq
TGGCCGTCCACGATGCAAACTATATTAAAAAGTTGGAAACTAGTTTACCACCAGAGAATT
CAGAGTTTGAAACTCATTTGGAGAGTGATAAAAGTGGTGCTATGGTTACTGTTGCCTCTC
ATAAAGATTTCGAGGGTGATGATGATAACATTTACGATACCTTTGTTTCACATCGTTCCA
TTAAAGCCGCATTGAGAGCAAGTGGTTCAGTTTGTGCCGCCGTTGATTCAGTTAGTCGTT
CTGGTTATACTCGTGCTTTTTGTGCCATTCGTCCACCTGGTCATCATGCTGGTCGTTATG
GTAGAACAAGTGATGCGCCATCTCAAGGCTATTGTTTAATCAATAACGTTGCCATTGGTG
CCAAGTATGCTTCATTGACCGCCGGTTATAGTAGAATTGCTGTGGTGGATTTCGATGTTC
ATCATGGTAATGGAACTCAAGAGATCCTAAGTGGTGATGACAATTTCCTCTTCATTTCAA
TTCATGTATGTGATGAAAAACGTTACTTTTATCCTGGTACCGGTCAAGATGTTGGTGATA
TCGATGAGGTGTCGGGTCAATTCGATGGTAACATTTTAAATATT----------AGTAAT
AATCAATTAGAAAGACAAAANCAACTTCATCAACANCAACAACAAGCTCAACAAGCACAA
CAACAACAATCTCCACAACAATCTCAAAACTATTGAAAATACCTCAAATAACAAACTACA
ACTACAACTACTAGTACAACAACAACTTTATCAACTAGTGATAGTGAATCTAATAATAAT
ATTAATAACAATAATAATGATTATAATAATAATAACAATAATAATAGTAATAATAATAAT
AATAATAGTAATAACAATCAACCAACAAATTTTAATTCTTCAACATCTTCNCCAATTTTA
TCAGGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATAAATAAT
AATAATAATAATAATAGTAATAATAATAATAATATGAATACATCAAACCCAACCAATCAA
CAAAGTTCTGTAATTATTTCTGATGACATGGATGATGTACAAACAAATTNTAATCCACCA
AACCCACAATATCCACTCTCACCAAATTCTGTAAATAGAGGTAATAATCCAAGCAACATT
AGTATGTCAGGTGCTCAACGTTCAGCCCCTTTAATCATTTCACCAAAACCCTCAAATTCT
CCAAATTCACCATCAACTTCAAATAACAAGGAACTCCTCAAAATATTAATAATAGCGA
Length of connected seq. 1248
Full length Seq ID -
Full length Seq. -
Length of full length seq. -