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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE349
Library VH
(Link to library)
Clone ID VHE349
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12408-1
Original site URL
Representative seq. ID VHE349P
(Link to Original site)
Representative DNA sequence 
>VHE349 (VHE349Q) /CSM/VH/VHE3-C/VHE349Q.Seq.d/
ACAAATTTATTTTTTAAAAAATATATTAAAAAGGATATTTTTTTCAGTAATTGTCTAATA
AAACTATTTTTATATTTTTTTATATAAAAATAATTTTTTTTAAAAAAAAAAXXXXXXXXX
XACCATCTGTTTTCATAATCTCTCGAGTTTTAAGTTTAATTCCAAGTCAATTGGATAATA
CACCATGGGGTGGACCAATTGATCATGATTTAATGGGTTTCCATGAAATTACACGTACTC
TTTACAAATCATTAAGAAATCTTATTGAAATGACTGCATTATCTCACTTTTTAACTCATA
GAATTGTATTACCACCACCAGAGTACTTTACATTTTCAACAAGATTACCATTTTTCCTTC
AACCAAGTTCAAGTATGGGTCTTTTAGTTAAAGGTCTTTTATTAGAGAATTTATCATTGG
AACAATTGGAAGAGATTTTCCCAAGTTTCACAAATATCAAAGAGGATTTGGCTTTAGCTT
CTCAATTTTGGGATACTGCATTTAAGATTGTCACCACCATTCACAACGAAGGTAACATTA
TTAGCAAAACAATTTATGAAGCTTTTGTTGAAGCAGACAAAGAAGGAGAGAAATAANAAA
AACTTTAATTAGGNAAAAAATTCAATCAAAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
kfif*kiy*kgyffq*LSNKTIFIFFYIKIIFFKKK---

---PSVFIISRVLSLIPSQLDNTPWGGPIDHDLMGFHEITRTLYKSLRNLIEMTALSHFL
THRIVLPPPEYFTFSTRLPFFLQPSSSMGLLVKGLLLENLSLEQLEEIFPSFTNIKEDLA
LASQFWDTAFKIVTTIHNEGNIISKTIYEAFVEADKEGEK*xkl*lgkkfnqn
Translated Amino Acid sequence (All Frames) 
Frame A:
tnlffkkyikkdiffsncliklflyffi*k*fflkkk---

---ticfhnlssfkfnsksig*ytmgwtn*s*fngfp*nytyslqiikksy*ndciislf
ns*ncitttrvlyifnkitifpstkfkygsfs*rsfirefiigtigrdfpkfhkyqrgfg
fsfsilgyci*dchhhsqrr*hy*qnnl*sfc*srqrrreixktlirxkiqsk

Frame B:
qiyflknilkriffsviv**nyfyiflyknnff*kk---

---PSVFIISRVLSLIPSQLDNTPWGGPIDHDLMGFHEITRTLYKSLRNLIEMTALSHFL
THRIVLPPPEYFTFSTRLPFFLQPSSSMGLLVKGLLLENLSLEQLEEIFPSFTNIKEDLA
LASQFWDTAFKIVTTIHNEGNIISKTIYEAFVEADKEGEK*xkl*lgkkfnqn

Frame C:
kfif*kiy*kgyffq*LSNKTIFIFFYIKIIFFKKK---

---hlfs*slef*v*fqvnwiihhgvdqlimi*wvsmklhvlftnh*eillk*lhyltf*
lielyyhhqstlhfqqdyhfsfnqvqvwvf*lkvfy*riyhwnnwkrfsqvsqiskriwl
*llnfgilhlrlsppfttkvtllakqfmklllkqtkkernxknfn*xknsiki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE349 (VHE349Q) /CSM/VH/VHE3-C/VHE349Q.Seq.d/                       1003   0.0
VHO347 (VHO347Q) /CSM/VH/VHO3-B/VHO347Q.Seq.d/                        995   0.0
VHC147 (VHC147Q) /CSM/VH/VHC1-B/VHC147Q.Seq.d/                        995   0.0
VHD744 (VHD744Q) /CSM/VH/VHD7-B/VHD744Q.Seq.d/                        989   0.0
VHQ116 (VHQ116Q) /CSM/VH/VHQ1-A/VHQ116Q.Seq.d/                        987   0.0
VHP380 (VHP380Q) /CSM/VH/VHP3-D/VHP380Q.Seq.d/                        829   0.0
VHO342 (VHO342Q) /CSM/VH/VHO3-B/VHO342Q.Seq.d/                        694   0.0
VHE391 (VHE391Q) /CSM/VH/VHE3-D/VHE391Q.Seq.d/                        650   0.0
VHK477 (VHK477Q) /CSM/VH/VHK4-D/VHK477Q.Seq.d/                         42   0.010
VHI711 (VHI711Q) /CSM/VH/VHI7-A/VHI711Q.Seq.d/                         42   0.010
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC090674|AC090674.4 Homo sapiens chromosome 12q clone RP11-26N11, WORKING DRAFT SEQUENCE, 18 unordered pieces.    32   0.84   6
CR381594|CR381594.6 Zebrafish DNA sequence from clone DKEY-12H3 in linkage group 19.    46   1.2    1
DX992782|DX992782.1 CHORI103-14L24.TJ.1 CHORI103 Schistosoma mansoni genomic clone CHORI103-14L24, genomic survey sequence.    34   2.3    2
DT242157|DT242157.1 JGI_CAAT12353.fwd CAAT Pimephales promelas brain 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAT12353 5', mRNA sequence.    44   4.8    1
H80665|H80665.1 yu77d04.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:239815 5' similar to SP:S36647 S36647 PHOSPHORYLASE KINASE ;, mRNA sequence.    44   4.8    1
EB388570|EB388570.1 nbj47c06.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA clone nbj47c06 5', mRNA sequence.    44   4.8    1
DA437187|DA437187.1 Homo sapiens cDNA clone CTONG2004402, 5' end, mRNA sequence.    44   4.8    1
DA196936|DA196936.1 Homo sapiens cDNA clone BRAMY4002758, 5' end, mRNA sequence.    44   4.8    1
DA148052|DA148052.1 Homo sapiens cDNA clone BRAMY2005211, 5' end, mRNA sequence.    44   4.8    1
DA135665|DA135665.1 Homo sapiens cDNA clone BRALZ2008691, 5' end, mRNA sequence.    44   4.8    1
dna update 2007. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC007863_4(AC007863|pid:none) Trypanosoma brucei chromosome 6 cl...    52   2e-05
AM502248_392(AM502248|pid:none) Leishmania infantum chromosome 30.     45   0.001
CT005267_366(CT005267|pid:none) Leishmania major strain Friedlin...    45   0.002
AE017350_227(AE017350|pid:none) Cryptococcus neoformans var. neo...    43   0.007
CR940353_141(CR940353|pid:none) Theileria annulata strain Ankara...    42   0.019
CP001050_1180(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945...    33   6.8
DQ465643_1(DQ465643|pid:none) Neisseria meningitidis strain Z126...    33   8.9
AL157959_1424(AL157959|pid:none) Neisseria meningitidis serogrou...    33   8.9
AE002098_1336(AE002098|pid:none) Neisseria meningitidis MC58, co...    33   8.9
AJ001313_1(AJ001313|pid:none) Neisseria meningitidis sodC, mutY ...    33   8.9
protein update 2009. 2.27
PSORT 

 psg: 0.97  gvh: 0.51  alm: 0.36  top: 0.67  tms: 0.00  mit: 0.40  mip: 0.06
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHE349 is mit
5' end seq. ID VHE349F
5' end seq. 
>VHE349F.Seq
ACAAATTTATTTTTTAAAAAATATATTAAAAAGGATATTTTTTTCAGTAATTGTCTAATA
AAACTATTTTTATATTTTTTTATATAAAAATAATTTTTTTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID VHE349Z
3' end seq. 
>VHE349Z.Seq
NNNNNNNNNNACCATCTGTTTTCATAATCTCTCGAGTTTTAAGTTTAATTCCAAGTCAAT
TGGATAATACACCATGGGGTGGACCAATTGATCATGATTTAATGGGTTTCCATGAAATTA
CACGTACTCTTTACAAATCATTAAGAAATCTTATTGAAATGACTGCATTATCTCACTTTT
TAACTCATAGAATTGTATTACCACCACCAGAGTACTTTACATTTTCAACAAGATTACCAT
TTTTCCTTCAACCAAGTTCAAGTATGGGTCTTTTAGTTAAAGGTCTTTTATTAGAGAATT
TATCATTGGAACAATTGGAAGAGATTTTCCCAAGTTTCACAAATATCAAAGAGGATTTGG
CTTTAGCTTCTCAATTTTGGGATACTGCATTTAAGATTGTCACCACCATTCACAACGAAG
GTAACATTATTAGCAAAACAATTTATGAAGCTTTTGTTGAAGCAGACAAAGAAGGAGAGA
AATAANAAAAACTTTAATTAGGNAAAAAATTCAATCAAAATT
Length of 3' end seq. 522
Connected seq. ID VHE349P
Connected seq. 
>VHE349P.Seq
ACAAATTTATTTTTTAAAAAATATATTAAAAAGGATATTTTTTTCAGTAATTGTCTAATA
AAACTATTTTTATATTTTTTTATATAAAAATAATTTTTTTTAAAAAAAAAA---------
-ACCATCTGTTTTCATAATCTCTCGAGTTTTAAGTTTAATTCCAAGTCAATTGGATAATA
CACCATGGGGTGGACCAATTGATCATGATTTAATGGGTTTCCATGAAATTACACGTACTC
TTTACAAATCATTAAGAAATCTTATTGAAATGACTGCATTATCTCACTTTTTAACTCATA
GAATTGTATTACCACCACCAGAGTACTTTACATTTTCAACAAGATTACCATTTTTCCTTC
AACCAAGTTCAAGTATGGGTCTTTTAGTTAAAGGTCTTTTATTAGAGAATTTATCATTGG
AACAATTGGAAGAGATTTTCCCAAGTTTCACAAATATCAAAGAGGATTTGGCTTTAGCTT
CTCAATTTTGGGATACTGCATTTAAGATTGTCACCACCATTCACAACGAAGGTAACATTA
TTAGCAAAACAATTTATGAAGCTTTTGTTGAAGCAGACAAAGAAGGAGAGAAATAANAAA
AACTTTAATTAGGNAAAAAATTCAATCAAAATT
Length of connected seq. 623
Full length Seq ID -
Full length Seq. -
Length of full length seq. -