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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE288
Library VH
(Link to library)
Clone ID VHE288
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12031-1
Original site URL
Representative seq. ID VHE288P
(Link to Original site)
Representative DNA sequence 
>VHE288 (VHE288Q) /CSM/VH/VHE2-D/VHE288Q.Seq.d/
TTACCACTTTAAAGCGACAATTAAAATAATATAAACATAATATTTGTAGATACTTTACAA
TAATTTGAATGAAAAGAAGAATAGTGATATAATATTTTTTAAAGAGACATATATACAGTA
GAGGATAAATAGTTTTTTTTTTAAAAAAAAAGAATANCAAAAAAAAAAXXXXXXXXXXAA
ATTCAATCATTACCACTTTAAAGCGNCAATTAAAATAATATAAACATAATATTTGTAGAT
ACTTTACAATAATTTGAAGAAAAGAAGCAATAGGGATATAATATTTTTTAAAGAGACATA
TATACAGTAGGAGGCATAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
yhfkatikii*t*yl*ilynnlnekknsdiiffketyiq*RINSFFFKKKEXQKK---

---KFNHYHFKAXIKII*t*yl*ilynnlkkrsnrdiiffketyiq*ea*
Translated Amino Acid sequence (All Frames) 
Frame A:
lpl*sdn*nniniifvdtlq*fe*kee**ynif*rdiytvedk*fff*kkrixkkk---

---KFNHYHFKAXIKII*t*yl*ilynnlkkrsnrdiiffketyiq*ea*

Frame B:
yhfkatikii*t*yl*ilynnlnekknsdiiffketyiq*RINSFFFKKKEXQKK---

---nsiittlkrqlk*ykhnicryftii*rkeaigi*yflkrhiysrrhk

Frame C:
ttlkrqlk*ykhnicryftii*mkrrivi*yflkrhiysrg*ivfflkkknxkkk---

---iqslpl*sxn*nniniifvdtlq*feekkq*gynif*rdiytvggin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE288 (VHE288Q) /CSM/VH/VHE2-D/VHE288Q.Seq.d/                        278   5e-74
SHE280 (SHE280Q) /CSM/SH/SHE2-D/SHE280Q.Seq.d/                        262   3e-69
SHA840 (SHA840Q) /CSM/SH/SHA8-B/SHA840Q.Seq.d/                        262   3e-69
SSJ160 (SSJ160Q) /CSM/SS/SSJ1-C/SSJ160Q.Seq.d/                         38   0.078
SSM826 (SSM826Q) /CSM/SS/SSM8-B/SSM826Q.Seq.d/                         36   0.31
SSM783 (SSM783Q) /CSM/SS/SSM7-D/SSM783Q.Seq.d/                         36   0.31
SSM709 (SSM709Q) /CSM/SS/SSM7-A/SSM709Q.Seq.d/                         36   0.31
SSL305 (SSL305Q) /CSM/SS/SSL3-A/SSL305Q.Seq.d/                         36   0.31
SSK630 (SSK630Q) /CSM/SS/SSK6-B/SSK630Q.Seq.d/                         36   0.31
SSK420 (SSK420Q) /CSM/SS/SSK4-A/SSK420Q.Seq.d/                         36   0.31
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EH631086|EH631086.1 EST2193 LK04 Laupala kohalensis cDNA clone 1061021471655 5', mRNA sequence.    54   0.002  1
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    38   0.003  7
AM460708|AM460708.2 Vitis vinifera contig VV78X107279.3, whole genome shotgun sequence.    38   0.004  2
AM428267|AM428267.1 Vitis vinifera contig VV78X148395.6, whole genome shotgun sequence.    38   0.006  2
AL109815|AL109815.2 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P10.    40   0.008  6
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    38   0.009  7
AM433408|AM433408.2 Vitis vinifera contig VV78X167709.4, whole genome shotgun sequence.    38   0.009  2
AM423426|AM423426.2 Vitis vinifera contig VV78X107279.6, whole genome shotgun sequence.    38   0.011  2
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    32   0.012  10
AM480442|AM480442.2 Vitis vinifera contig VV78X115987.3, whole genome shotgun sequence.    38   0.016  2
dna update 2007. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340_1(AM292340|pid:none) Tribolium castaneum gr19 gene for ...    40   0.025
AX647815_1(AX647815|pid:none) Sequence 2007 from Patent EP1270724.     37   0.22
AX647813_1(AX647813|pid:none) Sequence 2005 from Patent EP1270724.     36   0.37
AF079967_2(AF079967|pid:none) Phytomonas serpens 12S large subun...    35   0.82
AX647835_1(AX647835|pid:none) Sequence 2027 from Patent EP1270724.     34   1.4
CP000048_223(CP000048|pid:none) Borrelia hermsii DAH, complete g...    33   4.1
CP001519_16(CP001519|pid:none) Borrelia sp. SV1 plasmid SV1_lp17...    33   4.1
AC150800_5(AC150800|pid:none) Medicago truncatula chromosome 7 c...    32   5.3
AK127397_1(AK127397|pid:none) Homo sapiens cDNA FLJ45488 fis, cl...    32   9.0
protein update 2009. 6.30
PSORT 

 psg: 0.40  gvh: -0.01  alm: 0.73  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VHE288 is nuc
5' end seq. ID VHE288F
5' end seq. 
>VHE288F.Seq
TTACCACTTTAAAGCGACAATTAAAATAATATAAACATAATATTTGTAGATACTTTACAA
TAATTTGAATGAAAAGAAGAATAGTGATATAATATTTTTTAAAGAGACATATATACAGTA
GAGGATAAATAGTTTTTTTTTTAAAAAAAAAGAATANCAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 178
3' end seq. ID VHE288Z
3' end seq. 
>VHE288Z.Seq
NNNNNNNNNNAAATTCAATCATTACCACTTTAAAGCGNCAATTAAAATAATATAAACATA
ATATTTGTAGATACTTTACAATAATTTGAAGAAAAGAAGCAATAGGGATATAATATTTTT
TAAAGAGACATATATACAGTAGGAGGCATAAAT
Length of 3' end seq. 153
Connected seq. ID VHE288P
Connected seq. 
>VHE288P.Seq
TTACCACTTTAAAGCGACAATTAAAATAATATAAACATAATATTTGTAGATACTTTACAA
TAATTTGAATGAAAAGAAGAATAGTGATATAATATTTTTTAAAGAGACATATATACAGTA
GAGGATAAATAGTTTTTTTTTTAAAAAAAAAGAATANCAAAAAAAAAA----------AA
ATTCAATCATTACCACTTTAAAGCGNCAATTAAAATAATATAAACATAATATTTGTAGAT
ACTTTACAATAATTTGAAGAAAAGAAGCAATAGGGATATAATATTTTTTAAAGAGACATA
TATACAGTAGGAGGCATAAAT
Length of connected seq. 311
Full length Seq ID -
Full length Seq. -
Length of full length seq. -