VHE283
Library VH
(Link to library)
Clone ID VHE283
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15763-1
Original site URL
Representative seq. ID VHE283P
(Link to Original site)
Representative DNA sequence
>VHE283 (VHE283Q) /CSM/VH/VHE2-D/VHE283Q.Seq.d/
GTTATGCAAAGATTTTCAAAAAGAATCCAGTCGTACCATTGTATGGTGATATGCAAATCA
CATTGGAATCATTGGTTAAGAGATCACCACATTTCGATGAGAAGGCATGGGGTACCTCAA
CATTGGATAGTAAATCAGCGTTGGATTACGAGATCATTCATGTTTTGGACCAAACACGTT
CCCTCTACAACGAGTATATGGCACGTTTTGCAAATATGGTCAACGAGATTAGAGCGGCCA
AAGCTCGTGGTCCAAAGGAACCATTGCCATTGGCAGAGTCTGATATTCAAGCAATCACAT
TGATGGGTTTGAGGATTCTCTCTGATTGGACCTCAAGAGTACTTCAACAATCGGCTTGGA
AATATTCTAAACCAAACAATGATCCAACCATTTCAGCAACCTTTGATTATGAACGTGTCG
TTAAATTCAATTATACCAAAGAGGAGAGAACCGCTTTGGTTCAATTGATCGCCATGATCA
AATCATTGGCTTCATTGATGATGAAGAGTGAAACATTACTTCAACCAATACTTCGTAAGA
CCATTCATCAAGAGTTGCAAGAGTTTGTTCAAATCAATCTCAAAGAGACCATTAAATCCT
TTGTAAAGAATXXXXXXXXXXGAGTGTCCTCCAACGTTTCTCTTCAATCNTTAATATTGT
TCGTCATGATTGGTCTGGTGCTCCTCCAGATAATGGTGTCATTTGCGTTGATTCCTCAAC
AGAGTTTTATCGTTTATGGAGTGCCCTTCAATTTGTAATCTGTTGGCCACTCTCAAATGA
AAATGATAAATCTTTCCATGAATTGTTTGGTGATGGTTTAATGTGGGCCGGTTGTTCATT
GATCCATTTCCTTGGTCAACAATATCGTTTCGAATTATTTGATTTCTGTTATCACATTTT
AAATGTAGAAGAGGCTGCTGCTGTTCGTTCAGATAAACCTGCCTTAAAGAATTTCTTTAA
GAATGCTCAAATCATCAAAGATATCAATAATCAAATCTTTAGTATACTCAATACATATTG
TCCACCACCACCACCTTCTAATATGATCCTTTCACCACCTGCTACTGAACAAGCTGAACA
ATTTATAGTTACAACCACTGTTGAAGAACAATCAATTCAACAACAACAACAACAACAACA
ACAACAACAACTTCAACAATCAACTTCAAATTCTGGAAGTAGTTTATCACTTTCTGCTGC
TGGTGCACCACCTCCACCACCACCACCATCAACAAATGGTTTACCACCTCCACCACCAAG
GCTGAATAGAAAGAGTTCAAGTATTGAGATTATGCTCCACCCCCACCACCATTGGAATGC
CACCACCCCCACCA
sequence update 2002.10.25
Translated Amino Acid sequence
YAKIFKKNPVVPLYGDMQITLESLVKRSPHFDEKAWGTSTLDSKSALDYEIIHVLDQTRS
LYNEYMARFANMVNEIRAAKARGPKEPLPLAESDIQAITLMGLRILSDWTSRVLQQSAWK
YSKPNNDPTISATFDYERVVKFNYTKEERTALVQLIAMIKSLASLMMKSETLLQPILRKT
IHQELQEFVQINLKETIKSFVKN---

---SVLQRFSSIXNIVRHDWSGAPPDNGVICVDSSTEFYRLWSALQFVICWPLSNENDKS
FHELFGDGLMWAGCSLIHFLGQQYRFELFDFCYHILNVEEAAAVRSDKPALKNFFKNAQI
IKDINNQIFSILNTYCPPPPPSNMILSPPATEQAEQFIVTTTVEEQSIQQQQQQQQQQQL
QQSTSNSGSSLSLSAAGAPPPPPPPSTNGLPPPPPRLNRKSSSIEIMLHPHHHWNATTPT


Translated Amino Acid sequence (All Frames)
Frame A:
vmqrfskriqsyhcmvickshwnhwlrdhhismrrhgvpqhwivnqrwitrsfmfwtkhv
psttsiwhvlqiwstrlerpklvvqrnhchwqslifkqsh*wv*gfsligpqeyfnnrlg
nilnqtmiqpfqqplimnvslnsiipkrreplwfn*sp*snhwlh***rvkhyfnqyfvr
pfiksckslfksiskrplnpl*r---

---ecpptflfnx*ycss*lvwcssr*wchlr*flnrvlsfmecpsicnllatlk*k**i
fp*ivw*wfnvgrlfidpfpwstisfrii*fllshfkcrrgcccsfr*tclkefl*ecsn
hqryq*snl*ytqyilsttttf*ydpfttcy*ts*tiysynhc*rtinsttttttttttt
stinfkfwk*fitfccwcttsttttinkwfttsttkae*kefky*dyappppplechhph

Frame B:
lckdfqkessrtivw*yanhigiig*eittfr*egmgylnig**isvglrdhscfgpntf
plqrvygtfckygqrd*sgqsswskgtiaigrv*yssnhidgfedsl*ldlkststigle
if*tkq*snhfsnl*l*tcr*iqlyqrgenrfgsidrhdqiigfiddee*nitstnts*d
hssrvarvcsnqsqrdh*ilcke---

---SVLQRFSSIXNIVRHDWSGAPPDNGVICVDSSTEFYRLWSALQFVICWPLSNENDKS
FHELFGDGLMWAGCSLIHFLGQQYRFELFDFCYHILNVEEAAAVRSDKPALKNFFKNAQI
IKDINNQIFSILNTYCPPPPPSNMILSPPATEQAEQFIVTTTVEEQSIQQQQQQQQQQQL
QQSTSNSGSSLSLSAAGAPPPPPPPSTNGLPPPPPRLNRKSSSIEIMLHPHHHWNATTPT

Frame C:
YAKIFKKNPVVPLYGDMQITLESLVKRSPHFDEKAWGTSTLDSKSALDYEIIHVLDQTRS
LYNEYMARFANMVNEIRAAKARGPKEPLPLAESDIQAITLMGLRILSDWTSRVLQQSAWK
YSKPNNDPTISATFDYERVVKFNYTKEERTALVQLIAMIKSLASLMMKSETLLQPILRKT
IHQELQEFVQINLKETIKSFVKN---

---vssnvslqslilfvmiglvllqimvsfalipqqsfivygvpfnl*svghsqmkminl
smnclvmv*cgpvvh*sislvnnivsnylisvitf*m*krlllfvqinlp*rislrmlks
skisiikslvysihivhhhhlli*sfhhlllnklnnl*lqpllknnqfnnnnnnnnnnnf
nnqlqilevvyhflllvhhlhhhhhqqmvyhlhhqg*iervqvlrlcstpttigmppppp

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE283 (VHE283Q) /CSM/VH/VHE2-D/VHE283Q.Seq.d/ 2149 0.0
VHP502 (VHP502Q) /CSM/VH/VHP5-A/VHP502Q.Seq.d/ 1211 0.0
VHG686 (VHG686Q) /CSM/VH/VHG6-D/VHG686Q.Seq.d/ 1154 0.0
SHI756 (SHI756Q) /CSM/SH/SHI7-C/SHI756Q.Seq.d/ 1098 0.0
SHI590 (SHI590Q) /CSM/SH/SHI5-D/SHI590Q.Seq.d/ 1072 0.0
AFH509 (AFH509Q) /CSM/AF/AFH5-A/AFH509Q.Seq.d/ 977 0.0
VHJ827 (VHJ827Q) /CSM/VH/VHJ8-B/VHJ827Q.Seq.d/ 965 0.0
AHK356 (AHK356Q) /CSM/AH/AHK3-C/AHK356Q.Seq.d/ 946 0.0
AHJ856 (AHJ856Q) /CSM/AH/AHJ8-C/AHJ856Q.Seq.d/ 940 0.0
AFB604 (AFB604Q) /CSM/AF/AFB6-A/AFB604Q.Seq.d/ 940 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY368270|AY368270.1 Dictyostelium discoideum Rac-binding component of SCAR regulatory complex (pirA) mRNA, complete cds. 1203 0.0 1
EK381364|EK381364.1 1095469462626 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005867331 3', genomic survey sequence. 52 0.042 1
BI512543|BI512543.1 BB160009B10C07.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160009B10C07 5', mRNA sequence. 48 0.66 1
AC169550|AC169550.2 Bos taurus clone CH240-223N3, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces. 48 0.66 1
AP006347|AP006347.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjT02G18, TM0334a. 48 0.66 1
CS459555|CS459555.1 Sequence 36 from Patent WO2006117596. 46 2.6 1
AX653967|AX653967.1 Sequence 3837 from Patent WO03000898. 46 2.6 1
AC161843|AC161843.2 Bos taurus clone CH240-101D9, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces. 46 2.6 1
AC066603|AC066603.3 Homo sapiens chromosome 3 clone RP11-690C8 map 3p, WORKING DRAFT SEQUENCE, 21 unordered pieces. 46 2.6 1
AC173386|AC173386.2 Bos taurus clone CH240-526J11, WORKING DRAFT SEQUENCE, 14 unordered pieces. 46 2.6 1
dna update 2007. 7.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q6UK63) RecName: Full=Protein pirA; &AY368270_1(AY368270|pid:n... 399 e-110
AY122203_1(AY122203|pid:none) Drosophila melanogaster LD47929 fu... 139 2e-31
(Q299G2) RecName: Full=Cytoplasmic FMR1-interacting protein; Alt... 139 2e-31
BT011115_1(BT011115|pid:none) Drosophila melanogaster LD19991 fu... 139 2e-31
(Q9VF87) RecName: Full=Cytoplasmic FMR1-interacting protein; Alt... 139 2e-31
(Q7L576) RecName: Full=Cytoplasmic FMR1-interacting protein 1; A... 119 3e-25
T32647(T32647)hypothetical protein F56A11.1 - Caenorhabditis ele... 119 3e-25
D38549_1(D38549|pid:none) Homo sapiens KIAA0068 mRNA, partial cds. 119 3e-25
AY687629_1(AY687629|pid:none) Aplysia californica cytoplasmic fr... 118 4e-25
AK146613_1(AK146613|pid:none) Mus musculus 17 days pregnant adul... 118 6e-25
protein update 2009. 6.30
PSORT

psg: 0.79 gvh: 0.29 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
8.0 %: plasma membrane

>> prediction for VHE283 is cyt

5' end seq. ID VHE283F
5' end seq.
>VHE283F.Seq
GTTATGCAAAGATTTTCAAAAAGAATCCAGTCGTACCATTGTATGGTGATATGCAAATCA
CATTGGAATCATTGGTTAAGAGATCACCACATTTCGATGAGAAGGCATGGGGTACCTCAA
CATTGGATAGTAAATCAGCGTTGGATTACGAGATCATTCATGTTTTGGACCAAACACGTT
CCCTCTACAACGAGTATATGGCACGTTTTGCAAATATGGTCAACGAGATTAGAGCGGCCA
AAGCTCGTGGTCCAAAGGAACCATTGCCATTGGCAGAGTCTGATATTCAAGCAATCACAT
TGATGGGTTTGAGGATTCTCTCTGATTGGACCTCAAGAGTACTTCAACAATCGGCTTGGA
AATATTCTAAACCAAACAATGATCCAACCATTTCAGCAACCTTTGATTATGAACGTGTCG
TTAAATTCAATTATACCAAAGAGGAGAGAACCGCTTTGGTTCAATTGATCGCCATGATCA
AATCATTGGCTTCATTGATGATGAAGAGTGAAACATTACTTCAACCAATACTTCGTAAGA
CCATTCATCAAGAGTTGCAAGAGTTTGTTCAAATCAATCTCAAAGAGACCATTAAATCCT
TTGTAAAGAATNNNNNNNNNN
Length of 5' end seq. 621
3' end seq. ID VHE283Z
3' end seq.
>VHE283Z.Seq
NNNNNNNNNNGAGTGTCCTCCAACGTTTCTCTTCAATCNTTAATATTGTTCGTCATGATT
GGTCTGGTGCTCCTCCAGATAATGGTGTCATTTGCGTTGATTCCTCAACAGAGTTTTATC
GTTTATGGAGTGCCCTTCAATTTGTAATCTGTTGGCCACTCTCAAATGAAAATGATAAAT
CTTTCCATGAATTGTTTGGTGATGGTTTAATGTGGGCCGGTTGTTCATTGATCCATTTCC
TTGGTCAACAATATCGTTTCGAATTATTTGATTTCTGTTATCACATTTTAAATGTAGAAG
AGGCTGCTGCTGTTCGTTCAGATAAACCTGCCTTAAAGAATTTCTTTAAGAATGCTCAAA
TCATCAAAGATATCAATAATCAAATCTTTAGTATACTCAATACATATTGTCCACCACCAC
CACCTTCTAATATGATCCTTTCACCACCTGCTACTGAACAAGCTGAACAATTTATAGTTA
CAACCACTGTTGAAGAACAATCAATTCAACAACAACAACAACAACAACAACAACAACAAC
TTCAACAATCAACTTCAAATTCTGGAAGTAGTTTATCACTTTCTGCTGCTGGTGCACCAC
CTCCACCACCACCACCATCAACAAATGGTTTACCACCTCCACCACCAAGGCTGAATAGAA
AGAGTTCAAGTATTGAGATTATGCTCCACCCCCACCACCATTGGAATGCCACCACCCCCA
CCA
Length of 3' end seq. 723
Connected seq. ID VHE283P
Connected seq.
>VHE283P.Seq
GTTATGCAAAGATTTTCAAAAAGAATCCAGTCGTACCATTGTATGGTGATATGCAAATCA
CATTGGAATCATTGGTTAAGAGATCACCACATTTCGATGAGAAGGCATGGGGTACCTCAA
CATTGGATAGTAAATCAGCGTTGGATTACGAGATCATTCATGTTTTGGACCAAACACGTT
CCCTCTACAACGAGTATATGGCACGTTTTGCAAATATGGTCAACGAGATTAGAGCGGCCA
AAGCTCGTGGTCCAAAGGAACCATTGCCATTGGCAGAGTCTGATATTCAAGCAATCACAT
TGATGGGTTTGAGGATTCTCTCTGATTGGACCTCAAGAGTACTTCAACAATCGGCTTGGA
AATATTCTAAACCAAACAATGATCCAACCATTTCAGCAACCTTTGATTATGAACGTGTCG
TTAAATTCAATTATACCAAAGAGGAGAGAACCGCTTTGGTTCAATTGATCGCCATGATCA
AATCATTGGCTTCATTGATGATGAAGAGTGAAACATTACTTCAACCAATACTTCGTAAGA
CCATTCATCAAGAGTTGCAAGAGTTTGTTCAAATCAATCTCAAAGAGACCATTAAATCCT
TTGTAAAGAAT----------GAGTGTCCTCCAACGTTTCTCTTCAATCNTTAATATTGT
TCGTCATGATTGGTCTGGTGCTCCTCCAGATAATGGTGTCATTTGCGTTGATTCCTCAAC
AGAGTTTTATCGTTTATGGAGTGCCCTTCAATTTGTAATCTGTTGGCCACTCTCAAATGA
AAATGATAAATCTTTCCATGAATTGTTTGGTGATGGTTTAATGTGGGCCGGTTGTTCATT
GATCCATTTCCTTGGTCAACAATATCGTTTCGAATTATTTGATTTCTGTTATCACATTTT
AAATGTAGAAGAGGCTGCTGCTGTTCGTTCAGATAAACCTGCCTTAAAGAATTTCTTTAA
GAATGCTCAAATCATCAAAGATATCAATAATCAAATCTTTAGTATACTCAATACATATTG
TCCACCACCACCACCTTCTAATATGATCCTTTCACCACCTGCTACTGAACAAGCTGAACA
ATTTATAGTTACAACCACTGTTGAAGAACAATCAATTCAACAACAACAACAACAACAACA
ACAACAACAACTTCAACAATCAACTTCAAATTCTGGAAGTAGTTTATCACTTTCTGCTGC
TGGTGCACCACCTCCACCACCACCACCATCAACAAATGGTTTACCACCTCCACCACCAAG
GCTGAATAGAAAGAGTTCAAGTATTGAGATTATGCTCCACCCCCACCACCATTGGAATGC
CACCACCCCCACCA
Length of connected seq. 1324
Full length Seq ID -
Full length Seq. -
Length of full length seq. -