>VHE280 (VHE280Q) /CSM/VH/VHE2-D/VHE280Q.Seq.d/
XXXXXXXXXXCAAAAGAAGAGAGAAGGTACTCTCAGAGGTGGTTACATTGTCGTTAGTGA
AACCGCTCCATTAAGAATGATCTTAATTGCCACTGGTTCAGAAGTTCAACATTGTGTTGA
AGCCGGCTTAAAATTTATTAGGTGATGATATTCGTGTCGTCTCTATGCCATGCACTGAAC
TTTTCGATCGTCAATCAAATGAATACAAACAATCCGTACTTCCAAGTGGTTGTAGAAATC
GTATCGCTATGGAAGCTGGTGTCACTTCATTCTGGTATAAATATGTTGGTCTTGATGGTA
AAGTCATTGGTATTGATAGATTTGGTATGTCTGCACCAGGTAATGCCGTTATGAAACAAT
TAGGTAGACTTCNAAAATTTAGTAAACATTTCAAAACAATAAAAATAAAATAAAAT

---krrekvlsevvtlslvkplh*e*s*lplvqkfnivlkpa*NLLGDDIRVVSMPCTEL
FDRQSNEYKQSVLPSGCRNRIAMEAGVTSFWYKYVGLDGKVIGIDRFGMSAPGNAVMKQL
GRLXKFSKHFKTIKIK*n

Frame A:
---krrekvlsevvtlslvkplh*e*s*lplvqkfnivlkpa*NLLGDDIRVVSMPCTEL
FDRQSNEYKQSVLPSGCRNRIAMEAGVTSFWYKYVGLDGKVIGIDRFGMSAPGNAVMKQL
GRLXKFSKHFKTIKIK*n


Frame B:
---keerrysqrwlhcr**nrsikndlnchwfrsstlc*srlkiy*vmifvsslchalnf
sivnqmntnnpyfqvvveivslwklvslhsginmlvlmvkslvlidlvclhqvmpl*nn*
vdfxnlvniskq*k*nk


Frame C:
---kkregtlrggyivvsetaplrmiliatgsevqhcveaglkfir**yscrlyamh*tf
rssik*iqtirtskwl*ksyrygswchfilv*icws*w*shwy**iwyvctr*cryetir
*tski**tfqnnknkik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE280 (VHE280Q) /CSM/VH/VHE2-D/VHE280Q.Seq.d/                        718   0.0
VHN374 (VHN374Q) /CSM/VH/VHN3-D/VHN374Q.Seq.d/                        666   0.0
VHM780 (VHM780Q) /CSM/VH/VHM7-D/VHM780Q.Seq.d/                        666   0.0
CHQ579 (CHQ579Q) /CSM/CH/CHQ5-D/CHQ579Q.Seq.d/                        666   0.0
CHM832 (CHM832Q) /CSM/CH/CHM8-B/CHM832Q.Seq.d/                        666   0.0
AHP112 (AHP112Q) /CSM/AH/AHP1-A/AHP112Q.Seq.d/                        666   0.0
VHO430 (VHO430Q) /CSM/VH/VHO4-B/VHO430Q.Seq.d/                        662   0.0
CHO123 (CHO123Q) /CSM/CH/CHO1-A/CHO123Q.Seq.d/                        660   0.0
AHI811 (AHI811Q) /CSM/AH/AHI8-A/AHI811Q.Seq.d/                        660   0.0
AFJ520 (AFJ520Q) /CSM/AF/AFJ5-A/AFJ520Q.Seq.d/                        660   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   460   0.0    3
EF216682|EF216682.1 Karlodinium micrum transketolase mRNA, partial cds.    48   2e-04  2
AE014133|AE014133.1 Streptococcus mutans UA159, complete genome.    58   2e-04  1
EF216683|EF216683.1 Karlodinium micrum transketolase mRNA, partial cds.    44   0.043  2
CS586296|CS586296.1 Sequence 48 from Patent WO2007001423.          50   0.050  1
EA073168|EA073168.1 Sequence 526 from patent US 7183083.           50   0.050  1
AR886865|AR886865.1 Sequence 526 from patent US 7060458.           50   0.050  1
CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    50   0.050  1
AE015929|AE015929.1 Staphylococcus epidermidis ATCC 12228, complete genome.    50   0.050  1
EK205927|EK205927.1 1095460073904 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005681689 5', genomic survey sequence.    38   0.080  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556J0) RecName: Full=Transketolase;          Short=TK;        ...   160   2e-55
EF216683_1(EF216683|pid:none) Karlodinium micrum transketolase m...   113   1e-31
AJ821796_1(AJ821796|pid:none) Guillardia theta partial mRNA for ...   109   1e-30
EF216682_1(EF216682|pid:none) Karlodinium micrum transketolase m...   110   2e-30
(A6YB01) RecName: Full=Transketolase;          Short=TK;        ...   110   2e-30
EF216685_1(EF216685|pid:none) Bigelowiella natans transketolase ...   117   2e-30
CP001032_3788(CP001032|pid:none) Opitutus terrae PB90-1, complet...   106   1e-29
AM746676_3991(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    93   4e-28
CP001339_2861(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ...   107   2e-24
CP000875_486(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2...    89   3e-22

 psg: 0.75  gvh: 0.31  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHE280 is nuc

>VHE280Z.Seq
NNNNNNNNNNCAAAAGAAGAGAGAAGGTACTCTCAGAGGTGGTTACATTGTCGTTAGTGA
AACCGCTCCATTAAGAATGATCTTAATTGCCACTGGTTCAGAAGTTCAACATTGTGTTGA
AGCCGGCTTAAAATTTATTAGGTGATGATATTCGTGTCGTCTCTATGCCATGCACTGAAC
TTTTCGATCGTCAATCAAATGAATACAAACAATCCGTACTTCCAAGTGGTTGTAGAAATC
GTATCGCTATGGAAGCTGGTGTCACTTCATTCTGGTATAAATATGTTGGTCTTGATGGTA
AAGTCATTGGTATTGATAGATTTGGTATGTCTGCACCAGGTAATGCCGTTATGAAACAAT
TAGGTAGACTTCNAAAATTTAGTAAACATTTCAAAACAATAAAAATAAAATAAAAT