VHE278 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHE278
Library	VH (Link to library)
Clone ID	VHE278 (Link to dictyBase)
Atlas ID	-
NBRP ID	G23382
dictyBase ID	DDB0217545
Link to Contig	Contig-U12135-1\|Contig-U13509-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHE2-D/VHE278Q.Seq.d/
Representative seq. ID	VHE278P (Link to Original site)
Representative DNA sequence	>VHE278 (VHE278Q) /CSM/VH/VHE2-D/VHE278Q.Seq.d/ CATTATTAACAAGTTCATTTTTAACAAAAAAAGGTGAAAATGATGATGATTCATCCGATG AAGATTCAAATAAAAAGAGAAAGAAAAAGAGAGAGTCATCATCATCATCATCAACATCTT CAAAACCATCATTATTCCCAACTACCTCTAAAAAGGAAAAGATAGATGATAAACCATCTA CAACCACCACCACCACCACAACATCATTATTTGGTTCGACAACTACCTCTGGTTTATTCT CTAATCCATCAACAACATCAACTGGTTCATTATTTTCATCAAACCCACTTGGTTCAACAG CTTCCACTTCTAGTTTATTTGGTGCCTCAACATTAGCTTCTACTGCTACTACTACAGCTA CACCAACAACAAGCTTATTTGGCTCAACAACACCATCATCATCATCATCCTCATCATCAT CATCCTCATCTACTACTTCAACAACCACACCATCAAACAGTTTATTTGGAACATCATCAT CCTCCTCATCTACCTCTAGCTCTTTATTTGGTAGCACCACTTCAGCAACAACACCATCAA GTTTATTTGGAACAACAACAACATCATCTGACTCAAAATCTGAGACAAAAACAACTCCAT CACTTTCTTCAGGAGGATTATTTAGTACAACATCAGCCTCACCATTTTCAATTCCATCTT CAACTTXXXXXXXXXXCCATTTGGAGCACCATCATTTACATTTTCAACTCCATTTGGAGC ATCACCATTTGGAGCACCAACATTTACATCCTCACCTCCATTTGGAACACCAACATTTGC ATCCTCAACTCCATTTGGAGCACCACAAATTTCAACCTCAAGTTTGANTAATNTTTTTGG AGGAGCATNATNTTCAACCGNTGCACCATCATTTGTTTTTTCACCATTTGGAGCACCAAT AACCTCATCATCATCATCGTCATCATCATCATTACCATTTGGAGCACCAAATACTTCATC CTCATCCTCAACTCCATTTGGTGCATCACCTTTTGGAAATTCAATGGNTTCAANTACATC ACCATTTGGAGCACCTGCAGNTTCACCTTCACCATTTGGAANACAGGCAGCCTCACCCTT TCCATTTGGAGCACCAGCAGCCTCACCTTCACCATTTGGTTCAACCCCATCCACTGCACC AAATCCATTTGGTAATTTTGGNGCCGTGCCTGCAAANGGTTTTTCACTTGGTAAAATGGG AACAAGTAAAAAACCTGCAAAAAAGAAATAATNAAAAAATA
sequence update	2002.10.25
Translated Amino Acid sequence	LLTSSFLTKKGENDDDSSDEDSNKKRKKKRESSSSSSTSSKPSLFPTTSKKEKIDDKPST TTTTTTTSLFGSTTTSGLFSNPSTTSTGSLFSSNPLGSTASTSSLFGASTLASTATTTAT PTTSLFGSTTPSSSSSSSSSSSSTTSTTTPSNSLFGTSSSSSSTSSSLFGSTTSATTPSS LFGTTTTSSDSKSETKTTPSLSSGGLFSTTSASPFSIPSST--- ---PFGAPSFTFSTPFGASPFGAPTFTSSPPFGTPTFASSTPFGAPQISTSSLXNXFGGA XXSTXAPSFVFSPFGAPITSSSSSSSSSLPFGAPNTSSSSSTPFGASPFGNSMXSXTSPF GAPAXSPSPFGXQAASPFPFGAPAASPSPFGSTPSTAPNPFGNFGAVPAXGFSLGKMGTS KKPAKKK*xkn
Translated Amino Acid sequence (All Frames)	Frame A: hyqvhfqkkvkmmmihpmkiqikrerkreshhhhhqhlqnhhysqlplkrkrminhl qpppppqhhylvrqlplvyslihqqhqlvhyfhqthlvqqlpllvylvpqhllllllql hqqqaylaqqhhhhhhphhhhphlllqqphhqtvylehhhpphlplalylvaplqqqhhq vyleqqqhhltqnlrqkqlhhflqedylvqhqphhfqfhlql--- ---PFGAPSFTFSTPFGASPFGAPTFTSSPPFGTPTFASSTPFGAPQISTSSLXNXFGGA XXSTXAPSFVFSPFGAPITSSSSSSSSSLPFGAPNTSSSSSTPFGASPFGNSMXSXTSPF GAPAXSPSPFGXQAASPFPFGAPAASPSPFGSTPSTAPNPFGNFGAVPAXGFSLGKMGTS KKPAKKKxkn Frame B: iinkfifnkkrk**firrfkkekekerviiiiinifktiiipnylkgkdr*tiy nhhhhhniiiwfdnylwfilsinninwfiifikptwfnsfhffiwclnisfycyyysy tnnkliwlnntiiiiiliiiiliyyfnnhtikqfiwniiilliyllfiwhhfsnntik fiwnnnniilkidknnsitffrriiynisltifnsifn--- ---hlehhhlhfqlhlehhhlehqhlhphlhlehqhlhpqlhlehhkfqpqvxxfleeh xxqpxhhhlffhhlehqphhhhrhhhhyhlehqilhphpqlhlvhhlleiqwxqxhhhl ehlqxhlhhlexrqphpfhlehqqphlhhlvqphplhqihlvilxpclqxvfhlvkweqv knlqkrnnxki Frame C: LLTSSFLTKKGENDDDSSDEDSNKKRKKKRESSSSSSTSSKPSLFPTTSKKEKIDDKPST TTTTTTTSLFGSTTTSGLFSNPSTTSTGSLFSSNPLGSTASTSSLFGASTLASTATTTAT PTTSLFGSTTPSSSSSSSSSSSSTTSTTTPSNSLFGTSSSSSSTSSSLFGSTTSATTPSS LFGTTTTSSDSKSETKTTPSLSSGGLFSTTSASPFSIPSST--- ---iwstiiyifnsiwsitiwstniyiltsiwntnicilnsiwsttnfnlkfxxfwrsx xfnrctiicfftiwstnnliiiiviiiitiwstkyfililnsiwcitfwkfngfxyitiw stcxftftiwxtgsltlsiwstssltftiwfnpihctksiwfwxrackxfftwngnk ktckkeixkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHE278 (VHE278Q) /CSM/VH/VHE2-D/VHE278Q.Seq.d/ 815 0.0 SLC134 (SLC134Q) /CSM/SL/SLC1-B/SLC134Q.Seq.d/ 484 e-135 VHL589 (VHL589Q) /CSM/VH/VHL5-D/VHL589Q.Seq.d/ 460 e-128 VFK878 (VFK878Q) /CSM/VF/VFK8-D/VFK878Q.Seq.d/ 442 e-123 SSM153 (SSM153Q) /CSM/SS/SSM1-C/SSM153Q.Seq.d/ 42 0.020 SSC234 (SSC234Q) /CSM/SS/SSC2-B/SSC234Q.Seq.d/ 42 0.020 SHC702 (SHC702Q) /CSM/SH/SHC7-A/SHC702Q.Seq.d/ 42 0.020 SFH657 (SFH657Q) /CSM/SF/SFH6-C/SFH657Q.Seq.d/ 42 0.020 CFI487 (CFI487Q) /CSM/CF/CFI4-D/CFI487Q.Seq.d/ 42 0.020 CFI183 (CFI183Q) /CSM/CF/CFI1-D/CFI183Q.Seq.d/ 42 0.020
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 494 0.0 6 AL422462\|AL422462.1 T7 end of clone AZ0AA001E01 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus. 36 0.001 4 CU463832\|CU463832.5 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone DKEY-126F20. 52 0.039 1 BX163360\|BX163360.1 Danio rerio genomic clone DKEY-166H20, genomic survey sequence. 52 0.039 1 BX927325\|BX927325.15 Zebrafish DNA sequence from clone DKEYP-47G1 in linkage group 7. 52 0.039 1 CL312593\|CL312593.1 mth2-126H19_OP Medicago truncatula BAC end sequences Medicago truncatula genomic 5', genomic survey sequence. 26 0.19 5 DQ121094\|DQ121094.1 Hucho taimen clone ZA-87 microsatellite sequence. 34 0.29 3 DV902480\|DV902480.1 POSM0605022_K24F porcine skeletal muscle cDNA library (PoSM) Sus scrofa cDNA 5', mRNA sequence. 48 0.61 1 DV768429\|DV768429.1 ILLUMIGEN_MCQ_54261 Katze_MNLV Macaca nemestrina cDNA clone IBIUW:40745 5' similar to Bases 199 to 729 highly similar to human MGC23908 (Hs.429839), mRNA sequence. 48 0.61 1 DV230013\|DV230013.1 EST-AR119C01 Infected Porcine Thymus cDNA library Sus scrofa cDNA clone AR119C01, mRNA sequence. 48 0.61 1
dna update	2007. 7.13
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116957_76(AC116957\|pid:none) Dictyostelium discoideum chromoso... 110 1e-22 (Q555D2) RecName: Full=Uncharacterized protein DDB_G0274915; 110 1e-22 EU079651_1(EU079651\|pid:none) Phytophthora kernoviae isolate PD_... 35 7.3 AJ305256_1(AJ305256\|pid:none) Plasmodium berghei mRNA for chitin... 35 7.3 EU080563_1(EU080563\|pid:none) Phytophthora syringae isolate PD_0... 34 9.5 EU079768_1(EU079768\|pid:none) Phytophthora syringae isolate PD_0... 34 9.5
protein update	2009. 2.27
PSORT	psg: 0.36 gvh: 0.39 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.16 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 40.0 %: nuclear 8.0 %: mitochondrial 4.0 %: cytoskeletal >> prediction for VHE278 is cyt
5' end seq. ID	VHE278F
5' end seq.	>VHE278F.Seq CATTATTAACAAGTTCATTTTTAACAAAAAAAGGTGAAAATGATGATGATTCATCCGATG AAGATTCAAATAAAAAGAGAAAGAAAAAGAGAGAGTCATCATCATCATCATCAACATCTT CAAAACCATCATTATTCCCAACTACCTCTAAAAAGGAAAAGATAGATGATAAACCATCTA CAACCACCACCACCACCACAACATCATTATTTGGTTCGACAACTACCTCTGGTTTATTCT CTAATCCATCAACAACATCAACTGGTTCATTATTTTCATCAAACCCACTTGGTTCAACAG CTTCCACTTCTAGTTTATTTGGTGCCTCAACATTAGCTTCTACTGCTACTACTACAGCTA CACCAACAACAAGCTTATTTGGCTCAACAACACCATCATCATCATCATCCTCATCATCAT CATCCTCATCTACTACTTCAACAACCACACCATCAAACAGTTTATTTGGAACATCATCAT CCTCCTCATCTACCTCTAGCTCTTTATTTGGTAGCACCACTTCAGCAACAACACCATCAA GTTTATTTGGAACAACAACAACATCATCTGACTCAAAATCTGAGACAAAAACAACTCCAT CACTTTCTTCAGGAGGATTATTTAGTACAACATCAGCCTCACCATTTTCAATTCCATCTT CAACTTNNNNNNNNNN
Length of 5' end seq.	676
3' end seq. ID	VHE278Z
3' end seq.	>VHE278Z.Seq NNNNNNNNNNCCATTTGGAGCACCATCATTTACATTTTCAACTCCATTTGGAGCATCACC ATTTGGAGCACCAACATTTACATCCTCACCTCCATTTGGAACACCAACATTTGCATCCTC AACTCCATTTGGAGCACCACAAATTTCAACCTCAAGTTTGANTAATNTTTTTGGAGGAGC ATNATNTTCAACCGNTGCACCATCATTTGTTTTTTCACCATTTGGAGCACCAATAACCTC ATCATCATCATCGTCATCATCATCATTACCATTTGGAGCACCAAATACTTCATCCTCATC CTCAACTCCATTTGGTGCATCACCTTTTGGAAATTCAATGGNTTCAANTACATCACCATT TGGAGCACCTGCAGNTTCACCTTCACCATTTGGAANACAGGCAGCCTCACCCTTTCCATT TGGAGCACCAGCAGCCTCACCTTCACCATTTGGTTCAACCCCATCCACTGCACCAAATCC ATTTGGTAATTTTGGNGCCGTGCCTGCAAANGGTTTTTCACTTGGTAAAATGGGAACAAG TAAAAAACCTGCAAAAAAGAAATAATNAAAAAATA
Length of 3' end seq.	575
Connected seq. ID	VHE278P
Connected seq.	>VHE278P.Seq CATTATTAACAAGTTCATTTTTAACAAAAAAAGGTGAAAATGATGATGATTCATCCGATG AAGATTCAAATAAAAAGAGAAAGAAAAAGAGAGAGTCATCATCATCATCATCAACATCTT CAAAACCATCATTATTCCCAACTACCTCTAAAAAGGAAAAGATAGATGATAAACCATCTA CAACCACCACCACCACCACAACATCATTATTTGGTTCGACAACTACCTCTGGTTTATTCT CTAATCCATCAACAACATCAACTGGTTCATTATTTTCATCAAACCCACTTGGTTCAACAG CTTCCACTTCTAGTTTATTTGGTGCCTCAACATTAGCTTCTACTGCTACTACTACAGCTA CACCAACAACAAGCTTATTTGGCTCAACAACACCATCATCATCATCATCCTCATCATCAT CATCCTCATCTACTACTTCAACAACCACACCATCAAACAGTTTATTTGGAACATCATCAT CCTCCTCATCTACCTCTAGCTCTTTATTTGGTAGCACCACTTCAGCAACAACACCATCAA GTTTATTTGGAACAACAACAACATCATCTGACTCAAAATCTGAGACAAAAACAACTCCAT CACTTTCTTCAGGAGGATTATTTAGTACAACATCAGCCTCACCATTTTCAATTCCATCTT CAACTT----------CCATTTGGAGCACCATCATTTACATTTTCAACTCCATTTGGAGC ATCACCATTTGGAGCACCAACATTTACATCCTCACCTCCATTTGGAACACCAACATTTGC ATCCTCAACTCCATTTGGAGCACCACAAATTTCAACCTCAAGTTTGANTAATNTTTTTGG AGGAGCATNATNTTCAACCGNTGCACCATCATTTGTTTTTTCACCATTTGGAGCACCAAT AACCTCATCATCATCATCGTCATCATCATCATTACCATTTGGAGCACCAAATACTTCATC CTCATCCTCAACTCCATTTGGTGCATCACCTTTTGGAAATTCAATGGNTTCAANTACATC ACCATTTGGAGCACCTGCAGNTTCACCTTCACCATTTGGAANACAGGCAGCCTCACCCTT TCCATTTGGAGCACCAGCAGCCTCACCTTCACCATTTGGTTCAACCCCATCCACTGCACC AAATCCATTTGGTAATTTTGGNGCCGTGCCTGCAAANGGTTTTTCACTTGGTAAAATGGG AACAAGTAAAAAACCTGCAAAAAAGAAATAATNAAAAAATA
Length of connected seq.	1231
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas