VHE269
Library VH
(Link to library)
Clone ID VHE269
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHE269P
(Link to Original site)
Representative DNA sequence
>VHE269 (VHE269Q) /CSM/VH/VHE2-C/VHE269Q.Seq.d/
AAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCATTATGGACCGTCGTGA
AAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAAAACCACTTTATCAGA
TTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGGTGATATGAGATATAT
GTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAATCTTCATCTGTATCACT
TCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGTACTTCACACGAATTTTT
AATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGAAGTAACTGCTGCCCT
CCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGGTGTTTGCGTACAAAC
CGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGTCTTATTCGTCAACAA
AGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAAGCTTATCTCTCTTTCCG
XXXXXXXXXXCANTGCCGGTNAAGNTTTNCCNCAANGNGTTTTNGANCANTGGGGTTNAA
NTGGNGNTGNCAANAAAAATAAAAAANCCNCTGAAGTNGCTTTANCCNCCAAAAAAAAAA
AANGTTTAGCCCCAAAAATCCCANATTTTGANAAANTCCNCNAAAAACTNTAAACNANTT
AAGTNGCCCTTTGAGNTTTCA
sequence update 2002.10.25
Translated Amino Acid sequence
KYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKVSGDMRYM
SCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFSSEVTAAL
RVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTEEAYLSF-
--

---XAGXXXPQXVXXXWGXXGXXXKNKKXXEVALXXKKKKXLAPKIPXFXKXXXKL*tx*
val*xf


Translated Amino Acid sequence (All Frames)
Frame A:
kvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*sfw*yeiy
vmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fqfrsnccp
pcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*rslslfp
---

---xcrxxfxxxxfxxxgxxwxxqxk*kxx*sxfxxqkkkxfspknpxf*xxpxktxnxl
sxplxf

Frame B:
KYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKVSGDMRYM
SCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFSSEVTAAL
RVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTEEAYLSF-
--

---XAGXXXPQXVXXXWGXXGXXXKNKKXXEVALXXKKKKXLAPKIPXFXKXXXKL*tx*
val*xf

Frame C:
stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpikflvi*dic
hvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlisvqk*llps
vllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tlkklisls-
--

---xpvkxxxxxfxxxgvxxxxxxkikxplkxlxppkkkxv*pqksxilxxsxknxkxxk
xpfexs

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 1070 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 1070 0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 1070 0.0
VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 1070 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 1070 0.0
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 1070 0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 1070 0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 1070 0.0
VHQ469 (VHQ469Q) /CSM/VH/VHQ4-C/VHQ469Q.Seq.d/ 1070 0.0
VHQ463 (VHQ463Q) /CSM/VH/VHQ4-C/VHQ463Q.Seq.d/ 1070 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 1068 0.0 2
CX155337|CX155337.1 TfEST072F03 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 5e-34 4
CX154324|CX154324.1 TfEST033C12 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 8e-34 4
CX154971|CX154971.1 TfEST089A07 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 2e-33 4
CX154356|CX154356.1 TfEST029E10 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 3e-33 4
DY889811|DY889811.1 CeleSEQ6761 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ6761, mRNA sequence. 84 1e-32 4
DY889772|DY889772.1 CeleSEQ11980 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ11980, mRNA sequence. 84 1e-32 4
DY890935|DY890935.1 CeleSEQ7425 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ7425, mRNA sequence. 84 2e-32 4
DY887441|DY887441.1 CeleSEQ3766 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ3766, mRNA sequence. 84 2e-32 4
DY888936|DY888936.1 CeleSEQ6366 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ6366, mRNA sequence. 84 3e-32 4
dna update 2007. 7.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 249 8e-65
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 245 9e-64
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 244 2e-63
DQ357217_1(DQ357217|pid:none) Leishmania braziliensis elongation... 243 3e-63
AM494972_26(AM494972|pid:none) Leishmania braziliensis chromosom... 243 3e-63
AY618550_1(AY618550|pid:none) Trypanosoma cruzi elongation facto... 243 5e-63
CT005272_19(CT005272|pid:none) Leishmania major strain Friedlin,... 243 5e-63
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 243 6e-63
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 242 8e-63
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 242 8e-63
protein update 2009. 6.30
PSORT

psg: 0.48 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: cytoplasmic
16.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHE269 is cyt

5' end seq. ID VHE269F
5' end seq.
>VHE269F.Seq
AAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCATTATGGACCGTCGTGA
AAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAAAACCACTTTATCAGA
TTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGGTGATATGAGATATAT
GTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAATCTTCATCTGTATCACT
TCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGTACTTCACACGAATTTTT
AATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGAAGTAACTGCTGCCCT
CCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGGTGTTTGCGTACAAAC
CGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGTCTTATTCGTCAACAA
AGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAAGCTTATCTCTCTTTCCG
NNNNNNNNNN
Length of 5' end seq. 550
3' end seq. ID VHE269Z
3' end seq.
>VHE269Z.Seq
NNNNNNNNNNCANTGCCGGTNAAGNTTTNCCNCAANGNGTTTTNGANCANTGGGGTTNAA
NTGGNGNTGNCAANAAAAATAAAAAANCCNCTGAAGTNGCTTTANCCNCCAAAAAAAAAA
AANGTTTAGCCCCAAAAATCCCANATTTTGANAAANTCCNCNAAAAACTNTAAACNANTT
AAGTNGCCCTTTGAGNTTTCA
Length of 3' end seq. 201
Connected seq. ID VHE269P
Connected seq.
>VHE269P.Seq
AAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCATTATGGACCGTCGTGA
AAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAAAACCACTTTATCAGA
TTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGGTGATATGAGATATAT
GTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAATCTTCATCTGTATCACT
TCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGTACTTCACACGAATTTTT
AATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGAAGTAACTGCTGCCCT
CCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGGTGTTTGCGTACAAAC
CGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGTCTTATTCGTCAACAA
AGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAAGCTTATCTCTCTTTCCG
----------CANTGCCGGTNAAGNTTTNCCNCAANGNGTTTTNGANCANTGGGGTTNAA
NTGGNGNTGNCAANAAAAATAAAAAANCCNCTGAAGTNGCTTTANCCNCCAAAAAAAAAA
AANGTTTAGCCCCAAAAATCCCANATTTTGANAAANTCCNCNAAAAACTNTAAACNANTT
AAGTNGCCCTTTGAGNTTTCA
Length of connected seq. 731
Full length Seq ID -
Full length Seq. -
Length of full length seq. -