>VHE260 (VHE260Q) /CSM/VH/VHE2-C/VHE260Q.Seq.d/
ATATATATATAACAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAAATANC
AATAATAATAATAATTTTTTAAAAATAAAAAAATAAAAAAATAAAANCNAATTAAAAAAT
AATTTAATAATAANAATTTTTCNTTTNTAANGAANACNACCNAATAAAAAAAATAAAATA
NTAAATAAAATTTAAAAAAAAAAXXXXXXXXXXTTTCATTTTCATCACCGATAGAAAGAA
AGAGTTAATCATTACAGCAGGTGGTGAAAATATTTCACCAACCTTGATTGAAGGTTTCAT
TCGTCAAATCATTGGTGTTGAACAAGCCGTAGTAATTGGTGATCGTCAAAAATATTTAGT
TGCTTTGGTCACTGTCAATGCTGATTTATTCAAGTTATTACCAGGTCAAGGTTACACTCA
TCCATTACCAAAATCAATGGAAGAAGCTTCAACAGATAAACATTTCATTGCCTATATTGA
TTCTCAAATGAAAGATATTAATTCAAAACTTCCAAATGTTTCAACAATTAAAAAAGTTAA
AATTTTACCAGTTGAATTCCAAGAAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAA
ATTAAAAAGAAGAAATGTTAGTATTAAATATCAAAATGAAATTAAAGAACTTTATGGTGC
TGATTTTGTTTGATGGTGGNTTTAAACCAACTTCNNCCAGTNCTACTAGTAATAATAATN
NAAANAAAGATGAATCA

yiynn*fitfyls*kkkkixiiiiif*k*knkkikxn*kii***xffxxxexxxikkikx
*IKFKKK---

---FIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQKYLVALVTVNAD
LFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIKKVKILPVEFQE
TGETSELTPTKKLKRRNVSIKYQNEIKELYGADFV*wwx*tnfxqxy****xkxr*i

Frame A:
iyi*qliyyflfvikkkknxnnnnnflkikk*knkxxlknnliixifxx*xxxpnkknki
xnki*kk---

---fhfhhr*kervnhysrw*kyftnld*rfhssnhwc*tsrsnw*sskifscfghcqc*
fiqvitrsrlhssitkingrsfnr*tfhcly*fsnery*fktskcfnn*ks*nfts*ipr
nw*nf*insn*kikkkkc*y*isk*n*rtlwc*fclmvxlnqlxpvllviixxxkmn

Frame B:
yiynn*fitfyls*kkkkixiiiiif*k*knkkikxn*kii***xffxxxexxxikkikx
*IKFKKK---

---FIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQKYLVALVTVNAD
LFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIKKVKILPVEFQE
TGETSELTPTKKLKRRNVSIKYQNEIKELYGADFV*wwx*tnfxqxy****xkxr*i

Frame C:
iyitinlllfichkkkkkxq****ffknkkikk*xxikk*fnnxnfsfxxxttx*kk*nx
k*nlkkk---

---sfsspierks*slqqvvkifhqp*lkvsfvkslvlnkp**lvivkni*llwslsmli
yssyyqvkvtlihyqnqwkklqqinislpililk*kiliqnfqmfqqlkklkfyqlnskk
lvklln*lqlkn*keemlvlnikmklknfmvlilfdggfkptsxsxtsnnnxxkdes

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ345 (VHQ345Q) /CSM/VH/VHQ3-B/VHQ345Q.Seq.d/                        753   0.0
VHE260 (VHE260Q) /CSM/VH/VHE2-C/VHE260Q.Seq.d/                        753   0.0
VHB722 (VHB722Q) /CSM/VH/VHB7-A/VHB722Q.Seq.d/                        753   0.0
VHA335 (VHA335Q) /CSM/VH/VHA3-B/VHA335Q.Seq.d/                        753   0.0
CHR348 (CHR348Q) /CSM/CH/CHR3-B/CHR348Q.Seq.d/                        753   0.0
CHQ796 (CHQ796Q) /CSM/CH/CHQ7-D/CHQ796Q.Seq.d/                        753   0.0
CHP847 (CHP847Q) /CSM/CH/CHP8-B/CHP847Q.Seq.d/                        753   0.0
CHN456 (CHN456Q) /CSM/CH/CHN4-C/CHN456Q.Seq.d/                        753   0.0
AHF468 (AHF468Q) /CSM/AH/AHF4-C/AHF468Q.Seq.d/                        753   0.0
AHF157 (AHF157Q) /CSM/AH/AHF1-C/AHF157Q.Seq.d/                        753   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EJ970719|EJ970719.1 1093022079894 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002920862 5', genomic survey sequence.    52   0.023  1
EJ277446|EJ277446.1 1095366029905 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005468816 5', genomic survey sequence.    52   0.023  1
CR847926|CR847926.7 Zebrafish DNA sequence from clone DKEY-114O13 in linkage group 6.    40   0.33   3
BP508491|BP508491.1 Hydra magnipapillata cDNA, clone:hmp_02886.    48   0.36   1
BI959777|BI959777.1 HVSMEn0021G17f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0021G17f, mRNA sequence.    48   0.36   1
AC180654|AC180654.1 Strongylocentrotus purpuratus clone R3-3090F6, WORKING DRAFT SEQUENCE, 20 unordered pieces.    42   0.64   5
BX511114|BX511114.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.74   2
BX511083|BX511083.17 Zebrafish DNA sequence from clone CH211-195F22 in linkage group 1.    36   0.75   2
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38   1.0    8
EJ436561|EJ436561.1 1093015283999 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002359370 5', genomic survey sequence.    42   1.0    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE000516_2307(AE000516|pid:none) Mycobacterium tuberculosis CDC1...   106   7e-22
AM408590_2207(AM408590|pid:none) Mycobacterium bovis BCG Pasteur...   106   7e-22
BX842579_25(BX842579|pid:none) Mycobacterium tuberculosis H37Rv ...   106   7e-22
AL022602_30(AL022602|pid:none) Mycobacterium leprae cosmid B268.      105   2e-21
A87020(A87020) probable long-chain-fatty-acid-CoA ligase [import...   105   2e-21
AP011115_849(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl...   103   4e-21
CP000480_4107(CP000480|pid:none) Mycobacterium smegmatis str. MC...   103   6e-21
CP000656_2943(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...   102   1e-20
AM746676_8711(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    99   2e-19
CP000854_3186(CP000854|pid:none) Mycobacterium marinum M, comple...    98   2e-19

 psg: 0.59  gvh: 0.47  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHE260 is nuc

>VHE260F.Seq
ATATATATATAACAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAAATANC
AATAATAATAATAATTTTTTAAAAATAAAAAAATAAAAAAATAAAANCNAATTAAAAAAT
AATTTAATAATAANAATTTTTCNTTTNTAANGAANACNACCNAATAAAAAAAATAAAATA
NTAAATAAAATTTAAAAAAAAAANNNNNNNNNN

>VHE260Z.Seq
NNNNNNNNNNTTTCATTTTCATCACCGATAGAAAGAAAGAGTTAATCATTACAGCAGGTG
GTGAAAATATTTCACCAACCTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAAC
AAGCCGTAGTAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTG
ATTTATTCAAGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAG
AAGCTTCAACAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATT
CAAAACTTCCAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAG
AAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAAATTAAAAAGAAGAAATGTTAGTA
TTAAATATCAAAATGAAATTAAAGAACTTTATGGTGCTGATTTTGTTTGATGGTGGNTTT
AAACCAACTTCNNCCAGTNCTACTAGTAATAATAATNNAAANAAAGATGAATCA

>VHE260P.Seq
ATATATATATAACAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAAATANC
AATAATAATAATAATTTTTTAAAAATAAAAAAATAAAAAAATAAAANCNAATTAAAAAAT
AATTTAATAATAANAATTTTTCNTTTNTAANGAANACNACCNAATAAAAAAAATAAAATA
NTAAATAAAATTTAAAAAAAAAA----------TTTCATTTTCATCACCGATAGAAAGAA
AGAGTTAATCATTACAGCAGGTGGTGAAAATATTTCACCAACCTTGATTGAAGGTTTCAT
TCGTCAAATCATTGGTGTTGAACAAGCCGTAGTAATTGGTGATCGTCAAAAATATTTAGT
TGCTTTGGTCACTGTCAATGCTGATTTATTCAAGTTATTACCAGGTCAAGGTTACACTCA
TCCATTACCAAAATCAATGGAAGAAGCTTCAACAGATAAACATTTCATTGCCTATATTGA
TTCTCAAATGAAAGATATTAATTCAAAACTTCCAAATGTTTCAACAATTAAAAAAGTTAA
AATTTTACCAGTTGAATTCCAAGAAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAA
ATTAAAAAGAAGAAATGTTAGTATTAAATATCAAAATGAAATTAAAGAACTTTATGGTGC
TGATTTTGTTTGATGGTGGNTTTAAACCAACTTCNNCCAGTNCTACTAGTAATAATAATN
NAAANAAAGATGAATCA