VHE245
Library VH
(Link to library)
Clone ID VHE245
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHE245P
(Link to Original site)
Representative DNA sequence
>VHE245 (VHE245Q) /CSM/VH/VHE2-B/VHE245Q.Seq.d/
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCANAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTT
TACAATATGXXXXXXXXXXGNTGGGNCANTGGTTTTTTTAACTNTGCCTATCGNTCAGTC
GATCNCATTTTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAANTACGTTTCAATTGG
GGNTTCATCGANGAAGTTGAANATCCNCAANATGATCANCNANATGTTGACCCCCATCNC
AATTTAAGNGGTCCAAANGNTAAAAAATTCAGATCAAATGTATCCCAAGNTGCCNTTCAA
CCAANATTCAAAGNTCCAANAAACTTTAAACCAA
sequence update 2002.10.25
Translated Amino Acid sequence
yfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGD
VVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPXGTL
LGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCL
QY---

---WXXGFFNXAYRSVDXIFQVEGXDELRAKXRFNWGFIXEVEXPQXDXXXVDPHXNLXG
PXXKKFRSNVSQXAXQPXFKXPXNFKP


Translated Amino Acid sequence (All Frames)
Frame A:
iilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvv
mllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvxkvl
y*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyv
ynm---

---xgxxvfltxpixqsixffklkvlmsyxpxyvsigxssxklxixxmixxmltpixi*x
vqxxknsdqmypkxpfnqxskxqxtlnq

Frame B:
lfyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*
cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsxryf
irtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmf
ti---

---xgxwff*lclsxsrshfss*rx**vtxqxtfqlgxhrxs*xsxx*sxxc*ppsqfkx
skx*kiqikcipxcxstxiqxsxkl*t

Frame C:
yfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGD
VVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPXGTL
LGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCL
QY---

---WXXGFFNXAYRSVDXIFQVEGXDELRAKXRFNWGFIXEVEXPQXDXXXVDPHXNLXG
PXXKKFRSNVSQXAXQPXFKXPXNFKP

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 1082 0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/ 1082 0.0
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/ 1082 0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/ 1082 0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/ 1082 0.0
VHM372 (VHM372Q) /CSM/VH/VHM3-C/VHM372Q.Seq.d/ 1082 0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/ 1082 0.0
VHL517 (VHL517Q) /CSM/VH/VHL5-A/VHL517Q.Seq.d/ 1082 0.0
VHL117 (VHL117Q) /CSM/VH/VHL1-A/VHL117Q.Seq.d/ 1082 0.0
VHK762 (VHK762Q) /CSM/VH/VHK7-C/VHK762Q.Seq.d/ 1082 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC009598|AC009598.3 Homo sapiens chromosome 8 clone RP11-223O12 map 8, WORKING DRAFTSEQUENCE, 9 unordered pieces. 40 0.031 4
CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275. 38 0.24 2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003. 38 0.24 2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277. 38 0.24 2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273. 38 0.24 2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274. 38 0.24 2
CQ149594|CQ149594.1 Sequence 19616 from Patent WO0157276. 38 0.24 2
CQ110849|CQ110849.1 Sequence 19708 from Patent WO0157272. 38 0.24 2
EJ261209|EJ261209.1 1095349040450 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005495618 3', genomic survey sequence. 48 0.40 1
EJ150489|EJ150489.1 1092343756363 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001453166 5', genomic survey sequence. 48 0.40 1
dna update 2007. 7.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 177 5e-43
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik... 100 1e-19
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ... 73 1e-11
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 73 1e-11
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase; S... 71 4e-11
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas... 71 4e-11
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c... 70 8e-11
CR859295_1(CR859295|pid:none) Pongo abelii mRNA; cDNA DKFZp469L1... 70 8e-11
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra... 70 8e-11
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid... 70 8e-11
protein update 2009. 6.30
PSORT

psg: 0.67 gvh: 0.49 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHE245 is cyt

5' end seq. ID VHE245F
5' end seq.
>VHE245F.Seq
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCANAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTT
TACAATATGNNNNNNNNNN
Length of 5' end seq. 559
3' end seq. ID VHE245Z
3' end seq.
>VHE245Z.Seq
NNNNNNNNNNGNTGGGNCANTGGTTTTTTTAACTNTGCCTATCGNTCAGTCGATCNCATT
TTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAANTACGTTTCAATTGGGGNTTCATC
GANGAAGTTGAANATCCNCAANATGATCANCNANATGTTGACCCCCATCNCAATTTAAGN
GGTCCAAANGNTAAAAAATTCAGATCAAATGTATCCCAAGNTGCCNTTCAACCAANATTC
AAAGNTCCAANAAACTTTAAACCAA
Length of 3' end seq. 265
Connected seq. ID VHE245P
Connected seq.
>VHE245P.Seq
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCANAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTT
TACAATATG----------GNTGGGNCANTGGTTTTTTTAACTNTGCCTATCGNTCAGTC
GATCNCATTTTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAANTACGTTTCAATTGG
GGNTTCATCGANGAAGTTGAANATCCNCAANATGATCANCNANATGTTGACCCCCATCNC
AATTTAAGNGGTCCAAANGNTAAAAAATTCAGATCAAATGTATCCCAAGNTGCCNTTCAA
CCAANATTCAAAGNTCCAANAAACTTTAAACCAA
Length of connected seq. 804
Full length Seq ID -
Full length Seq. -
Length of full length seq. -