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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE225
Library VH
(Link to library)
Clone ID VHE225
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10968-1
Original site URL
Representative seq. ID VHE225P
(Link to Original site)
Representative DNA sequence 
>VHE225 (VHE225Q) /CSM/VH/VHE2-B/VHE225Q.Seq.d/
AAAATTTTCATTTCCAAATTATTTTTATATTATACATAATTTTAATAATAATAATAATAA
TAATAATAATAAATAAGTTATTATTATATATATTTACCCCTATTTATTATTATTATTTTT
ATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAATAAAAAAAATAAAAAAAAAATAA
AAAAAAANGAATATTAATATAAAGAAATTAGANGGNCCAATTTATAGTATXXXXXXXXXX
GAAATTGATGAAGCAAGACAATCATGTGGAACATCAAGAACACCAAGTGCAANTTATTTT
AAAGGAAAAAAGAAACCTNCCACAAATAATAGTAATAATAATAATAATAACAACAATANC
AATAGCNATAATAATACTAGCGATATCNAATAATAATAATNATATCAATAATAATAATAA
CACCANCTCNACCNATTCCCCATTNGAAATGTGTTTTACAAAATTNTACAGAAGGAACTC
AAGTAAAATATGAAGATTTAATCAAAAACGAAGAAGCCAAGGCTTTATCACAAATGTACC
AAAACATCCTCAAAAAATAAAATCTTCTCCTCAAACTACATGTAAATAATAAATAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
kifisklflyyt*f**********isyyyiylplfiiiifi*iiknys*skkikkikkk*
KKXNINIKKLXGPIYS---

---KLMKQDNHVEHQEHQVQXILKEKRNLPQIIVIIIIITTIXIAIIILAISNNNNXINN
NNNTXSTXSPXEMCFTKXYRRNSSKI*rfnqkrrsqgfitnvpkhpqkiksspqttck**
ik
Translated Amino Acid sequence (All Frames) 
Frame A:
kifisklflyyt*f**********isyyyiylplfiiiifi*iiknys*skkikkikkk*
KKXNINIKKLXGPIYS---

---eidearqscgtsrtpsaxyfkgkkkpxtnnsnnnnnnnnxnsxnntsdix***xyq*
***hxlxxfpixnvfykixqkelk*nmki*sktkkprlyhkctktssknkifssnym*ii
nk

Frame B:
kfsfpnyfyiihnfnnnnnnnnnk*viiiyiypyllllflfk**kiihkvkk*kk*kknk
kkxili*rn*xxqfiv---

---KLMKQDNHVEHQEHQVQXILKEKRNLPQIIVIIIIITTIXIAIIILAISNNNNXINN
NNNTXSTXSPXEMCFTKXYRRNSSKI*rfnqkrrsqgfitnvpkhpqkiksspqttck**
ik

Frame C:
nfhfqiifilyiiliiiiiiiiinklllyiftpiyyyyfylnnkklfik*knkknkkkik
kxey*ykeirxxnl*y---

---n**sktimwnikntkcxlf*rkketxhk********qqxq*x**y*ryxiiixisii
iitpxxpiphxkcvlqnxtegtqvkyedlikneeakalsqmyqnilkk*nlllklhvnnk
*r
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE225 (VHE225Q) /CSM/VH/VHE2-B/VHE225Q.Seq.d/                        325   4e-88
VHB748 (VHB748Q) /CSM/VH/VHB7-B/VHB748Q.Seq.d/                        256   3e-67
VHI650 (VHI650Q) /CSM/VH/VHI6-C/VHI650Q.Seq.d/                        254   1e-66
VHE125 (VHE125Q) /CSM/VH/VHE1-B/VHE125Q.Seq.d/                        254   1e-66
SHF159 (SHF159Q) /CSM/SH/SHF1-C/SHF159Q.Seq.d/                        254   1e-66
AHQ293 (AHQ293Q) /CSM/AH/AHQ2-D/AHQ293Q.Seq.d/                        254   1e-66
AHL609 (AHL609Q) /CSM/AH/AHL6-A/AHL609Q.Seq.d/                        254   1e-66
AHJ409 (AHJ409Q) /CSM/AH/AHJ4-A/AHJ409Q.Seq.d/                        246   3e-64
AFJ279 (AFJ279Q) /CSM/AF/AFJ2-D/AFJ279Q.Seq.d/                        218   7e-56
CHE701 (CHE701Q) /CSM/CH/CHE7-A/CHE701Q.Seq.d/                        214   1e-54
own update 2002.12.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CE701944|CE701944.1 tigr-gss-dog-17000368966242 Dog Library Canis familiaris genomic,genomic survey sequence.    40   0.058  2
EK225313|EK225313.1 1095460156784 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005707342 3', genomic survey sequence.    46   0.16   2
AC200609|AC200609.2 Zea mays chromosome 6 clone CH201-361G5; ZMMBBc0361G05, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    46   1.1    1
AC069592|AC069592.4 Homo sapiens chromosome 17 clone RP11-317O7 map 17, LOW-PASS SEQUENCE SAMPLING.    46   1.1    1
CW461750|CW461750.1 fsbb001f209i23k0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f209i23, genomic survey sequence.    46   1.1    1
CW460858|CW460858.1 fsbb001f208d23f0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f208d23, genomic survey sequence.    46   1.1    1
CW425989|CW425989.1 fsbb001f137c21k0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f137c21, genomic survey sequence.    46   1.1    1
CL168450|CL168450.1 104_366_10810834_148_31806_130 Sorghum methylation-filtered library (LibID: 104) Sorghum bicolor genomic clone 10810834, genomic survey sequence.    46   1.1    1
CG165533|CG165533.1 PUIID06TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0588B12, genomic survey sequence.    46   1.1    1
BZ756932|BZ756932.1 PUDBV79TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa151N14, DNA sequence.    46   1.1    1
dna update 2007. 6.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 391,177,367
protein update 2009. 6.30
PSORT 

 psg: 0.73  gvh: 0.45  alm: 0.07  top: 0.67  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VHE225 is cyt
5' end seq. ID VHE225F
5' end seq. 
>VHE225F.Seq
AAAATTTTCATTTCCAAATTATTTTTATATTATACATAATTTTAATAATAATAATAATAA
TAATAATAATAAATAAGTTATTATTATATATATTTACCCCTATTTATTATTATTATTTTT
ATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAATAAAAAAAATAAAAAAAAAATAA
AAAAAAANGAATATTAATATAAAGAAATTAGANGGNCCAATTTATAGTATNNNNNNNNNN
Length of 5' end seq. 240
3' end seq. ID VHE225Z
3' end seq. 
>VHE225Z.Seq
NNNNNNNNNNGAAATTGATGAAGCAAGACAATCATGTGGAACATCAAGAACACCAAGTGC
AANTTATTTTAAAGGAAAAAAGAAACCTNCCACAAATAATAGTAATAATAATAATAATAA
CAACAATANCAATAGCNATAATAATACTAGCGATATCNAATAATAATAATNATATCAATA
ATAATAATAACACCANCTCNACCNATTCCCCATTNGAAATGTGTTTTACAAAATTNTACA
GAAGGAACTCAAGTAAAATATGAAGATTTAATCAAAAACGAAGAAGCCAAGGCTTTATCA
CAAATGTACCAAAACATCCTCAAAAAATAAAATCTTCTCCTCAAACTACATGTAAATAAT
AAATAAAGA
Length of 3' end seq. 369
Connected seq. ID VHE225P
Connected seq. 
>VHE225P.Seq
AAAATTTTCATTTCCAAATTATTTTTATATTATACATAATTTTAATAATAATAATAATAA
TAATAATAATAAATAAGTTATTATTATATATATTTACCCCTATTTATTATTATTATTTTT
ATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAATAAAAAAAATAAAAAAAAAATAA
AAAAAAANGAATATTAATATAAAGAAATTAGANGGNCCAATTTATAGTAT----------
GAAATTGATGAAGCAAGACAATCATGTGGAACATCAAGAACACCAAGTGCAANTTATTTT
AAAGGAAAAAAGAAACCTNCCACAAATAATAGTAATAATAATAATAATAACAACAATANC
AATAGCNATAATAATACTAGCGATATCNAATAATAATAATNATATCAATAATAATAATAA
CACCANCTCNACCNATTCCCCATTNGAAATGTGTTTTACAAAATTNTACAGAAGGAACTC
AAGTAAAATATGAAGATTTAATCAAAAACGAAGAAGCCAAGGCTTTATCACAAATGTACC
AAAACATCCTCAAAAAATAAAATCTTCTCCTCAAACTACATGTAAATAATAAATAAAGA
Length of connected seq. 589
Full length Seq ID -
Full length Seq. -
Length of full length seq. -