VHE212
Library VH
(Link to library)
Clone ID VHE212
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16507-1
Original site URL
Representative seq. ID VHE212P
(Link to Original site)
Representative DNA sequence
>VHE212 (VHE212Q) /CSM/VH/VHE2-A/VHE212Q.Seq.d/
AACACACATAAAAATGGTAATAAAAAAATTATTTATATTAATTTTTTGTTTGTTTTTAAT
TATCAATGAAATTAATGGAAAAAAAACAAAAATAAATGATATTAAAAAATCAAAACCAAA
ACTATCATCAACATTATTAAATGTTCATATTGTTGCTCATACTCATGATGATGTTGGTTG
GTTAAAAACAGTTGATGAATATTATTATGGATCAAATATGTCAATTGCATTTGCAGGTGT
TCAATATACTTTGGATACAGCCATTACCTGTTTATTGGCAAATCCAGAAAGAAAGTTTAT
TTATGTTGAAATTGCATTTTTCCAAAGATGGTGGGATGAACAAAGTACAACAATGCAAAA
TATTGTTAAGGGTTTGGTTGAAAGTGGTCAATTGGAATTCATAAATGGTGGGTATTGTAT
GAATGATGAGGCTACTACCTACTATGACGATACTATTGACCAAATGACATTGGGCCATCA
ATTCCTTTGGGAGAATTTCGGAGTTATGCCAAAGATAGGCTGGCACATAGATCCATTTGG
CCATAGTGCAACACAAGCTCGTATCTTTGGTCAATTAGGATTCGATGCATTCATTATCGG
TCGTATGGAXXXXXXXXXXTAACCAACTATCGTCCATCATGGAATTTAACCGTGGTTCAA
CCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTACATTCAAGATCCTAATCAA
TCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTGCATCGTTAAGAGATGGT
CAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATGGTCGTGGTGTTGGTCAA
CCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGATTTTCCATGATATTTCA
AGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTATCACATCCATTACTCCCA
ATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTCAATATCAAGGTGTTTAC
TCACCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAAGATTCAAACTCTACAATGG
TTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAATATTTATCAAATTGATGGT
CAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAACTATCTTTTCAACAATT
ACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAAAATTATCAAATTTATCA
AGATTAAAATGGAAAACTGTTGATGGTAAAAACTATGATCATAAATCATCATCATCAACT
AAAGAAGATTCTTCAAAGGTTTTGTTTTTACTTTTTCTCCAATGCAAATCAGAACTTTTA
AATTACTA
sequence update 2002.10.25
Translated Amino Acid sequence
THIKMVIKKLFILIFCLFLIINEINGKKTKINDIKKSKPKLSSTLLNVHIVAHTHDDVGW
LKTVDEYYYGSNMSIAFAGVQYTLDTAITCLLANPERKFIYVEIAFFQRWWDEQSTTMQN
IVKGLVESGQLEFINGGYCMNDEATTYYDDTIDQMTLGHQFLWENFGVMPKIGWHIDPFG
HSATQARIFGQLGFDAFIIGRM---

---TNYRPSWNLTVVQPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCASLRDGQLDM
MMHRRTLKDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLSHPLLPMFTT
TQQSSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQ
DPQTITLDLSTIFSTITITSATEMNLTGVQKLSNLSRLKWKTVDGKNYDHKSSSSTKEDS
SKVLFLLFLQCKSELLNY


Translated Amino Acid sequence (All Frames)
Frame A:
nthkngnkkiiyinflfvfnyq*n*wkknknk*y*kiktktiiniikcsyccsys**cwl
vkns**illwikyvncicrcsiyfgyshylfigksrkkvylc*ncifpkmvg*tkynnak
yc*gfg*kwsigihkwwvlye**gyyll*ryy*pndigpsiplgefrsyakdrlahrsiw
p*cntssylwsirircihyrsyg---

---*ptivhhgi*pwfnqpvvimyl*mllptfkilinhynsplslievvdvhr*emvnwi
**civvl*kmmvvvlvnq*msqlkslqlvn*fsmifqvmlnliivllhslyhihysqclq
plnnlqtigilnikvfthh*lqphlyqmv*rfklyng*iikiipyfyvlkifiklmvkih
kihklsl*ifqlsfqqlqsllqlk*i*lvfknyqiyqd*ngkllmvktmiinhhhqlkki
lqrfcfyffsnanqnf*it

Frame B:
THIKMVIKKLFILIFCLFLIINEINGKKTKINDIKKSKPKLSSTLLNVHIVAHTHDDVGW
LKTVDEYYYGSNMSIAFAGVQYTLDTAITCLLANPERKFIYVEIAFFQRWWDEQSTTMQN
IVKGLVESGQLEFINGGYCMNDEATTYYDDTIDQMTLGHQFLWENFGVMPKIGWHIDPFG
HSATQARIFGQLGFDAFIIGRM---

---nqlssimefnrgstnqw*lctcecyclhsrs*siitihhch**kswmcivkrwsigy
ddassyfer*wswcwstne*vnsnryn**idfp*yfklcsislsscctlfitsitpnvyn
hstifkrlefsisrclltidfsltftkwfkdsnstmvr*sr*yhtfty*kylsn*wsrft
rstnyhfrsfnylfnnynhfcn*nefnwcskiikfikikmenc*w*kl*s*iiiin*rrf
fkgfvftfspmqirtfkll

Frame C:
ht*kw**knyly*ffvcf*lsmklmekkqk*milknqnqnyhqhy*mfilllilmmmlvg
*kqlmniimdqicqlhlqvfnilwiqplpvywqiqkeslfmlklhfskdggmnkvqqcki
llrvwlkvvnwns*mvgiv*mmrllptmtilltk*hwainsfgriselcqr*agt*ihla
ivqhklvslvn*dsmhslsvvw---

---TNYRPSWNLTVVQPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCASLRDGQLDM
MMHRRTLKDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLSHPLLPMFTT
TQQSSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQ
DPQTITLDLSTIFSTITITSATEMNLTGVQKLSNLSRLKWKTVDGKNYDHKSSSSTKEDS
SKVLFLLFLQCKSELLNY

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE212 (VHE212Q) /CSM/VH/VHE2-A/VHE212Q.Seq.d/ 2452 0.0
VHQ167 (VHQ167Q) /CSM/VH/VHQ1-C/VHQ167Q.Seq.d/ 1524 0.0
VHH791 (VHH791Q) /CSM/VH/VHH7-D/VHH791Q.Seq.d/ 1524 0.0
VHB156 (VHB156Q) /CSM/VH/VHB1-C/VHB156Q.Seq.d/ 1524 0.0
VHK686 (VHK686Q) /CSM/VH/VHK6-D/VHK686Q.Seq.d/ 1518 0.0
AHJ372 (AHJ372Q) /CSM/AH/AHJ3-C/AHJ372Q.Seq.d/ 1516 0.0
AHE423 (AHE423Q) /CSM/AH/AHE4-A/AHE423Q.Seq.d/ 1513 0.0
AHE874 (AHE874Q) /CSM/AH/AHE8-D/AHE874Q.Seq.d/ 1511 0.0
VHI312 (VHI312Q) /CSM/VH/VHI3-A/VHI312Q.Seq.d/ 1511 0.0
AHE874 (AHE874Q) /CSM/AH/AHE8-D/AHE874Q.Seq.d/ 1511 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds. 1392 0.0 3
CK149800|CK149800.1 CsmgEST00336 Culicoides sonorensis female serum-fed midgut cDNA Library Culicoides sonorensis cDNA, mRNA sequence. 117 2e-23 3
DN814237|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation, mRNA sequence. 52 2e-16 4
DN816506|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation, mRNA sequence. 52 2e-16 4
CX633815|CX633815.1 taj44a03.y3 Hydra EST UCI 5 Hydra magnipapillata cDNA 5' similar to TR:Q93093 Q93093 TRUNCATED LYSOSOMAL ACID ALPHA-MANNOSIDASE ;, mRNA sequence. 52 3e-16 4
DN816232| truncated lysosomal acid alpha-mannosidase [Homo sapiens], mRNA sequence. 52 4e-16 4
DN811862| lysosomal alpha-mannosidase [Cavia porcellus], mRNA sequence. 52 4e-16 4
DT613126|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation, mRNA sequence. 52 4e-16 4
DN815247| lysosomal alpha-mannosidase [Cavia porcellus], mRNA sequence. 52 4e-16 4
CB073433|CB073433.1 taa32h01.y1 Hydra EST -II Hydra magnipapillata cDNA 5' similar to TR:Q93093 Q93093 TRUNCATED LYSOSOMAL ACID ALPHA-MANNOSIDASE ;, mRNA sequence. 52 3e-15 4
dna update 2007. 6.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34098) RecName: Full=Lysosomal alpha-mannosidase; Sho... 392 e-110
M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi... 391 e-107
(Q29451) RecName: Full=Lysosomal alpha-mannosidase; Sho... 210 1e-52
AK068415_1(AK068415|pid:none) Oryza sativa Japonica Group cDNA c... 209 2e-52
AK291572_1(AK291572|pid:none) Homo sapiens cDNA FLJ76867 complet... 208 3e-52
U05572_1(U05572|pid:none) Human lysosomal alpha-mannosidase (MAN... 208 3e-52
AB209921_1(AB209921|pid:none) Homo sapiens mRNA for mannosidase,... 208 3e-52
AY099704_1(AY099704|pid:none) Arabidopsis thaliana alpha-mannosi... 207 7e-52
AB005230_20(AB005230|pid:none) Arabidopsis thaliana genomic DNA,... 207 7e-52
JC2200(JC2200)alpha-mannosidase (EC 3.2.1.24) precursor - human 207 1e-51
protein update 2009. 6.30
PSORT

psg: 1.01 gvh: 0.62 alm: 0.17 top: 0.43 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: mitochondrial
12.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for VHE212 is end

5' end seq. ID VHE212F
5' end seq.
>VHE212F.Seq
AACACACATAAAAATGGTAATAAAAAAATTATTTATATTAATTTTTTGTTTGTTTTTAAT
TATCAATGAAATTAATGGAAAAAAAACAAAAATAAATGATATTAAAAAATCAAAACCAAA
ACTATCATCAACATTATTAAATGTTCATATTGTTGCTCATACTCATGATGATGTTGGTTG
GTTAAAAACAGTTGATGAATATTATTATGGATCAAATATGTCAATTGCATTTGCAGGTGT
TCAATATACTTTGGATACAGCCATTACCTGTTTATTGGCAAATCCAGAAAGAAAGTTTAT
TTATGTTGAAATTGCATTTTTCCAAAGATGGTGGGATGAACAAAGTACAACAATGCAAAA
TATTGTTAAGGGTTTGGTTGAAAGTGGTCAATTGGAATTCATAAATGGTGGGTATTGTAT
GAATGATGAGGCTACTACCTACTATGACGATACTATTGACCAAATGACATTGGGCCATCA
ATTCCTTTGGGAGAATTTCGGAGTTATGCCAAAGATAGGCTGGCACATAGATCCATTTGG
CCATAGTGCAACACAAGCTCGTATCTTTGGTCAATTAGGATTCGATGCATTCATTATCGG
TCGTATGGANNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID VHE212Z
3' end seq.
>VHE212Z.Seq
NNNNNNNNNNTAACCAACTATCGTCCATCATGGAATTTAACCGTGGTTCAACCAACCAGT
GGTAATTATGTACCTGTGAATGCTATTGCCTACATTCAAGATCCTAATCAATCATTACAA
TTCACCATTGTCACTGATAGAAGTCGTGGATGTGCATCGTTAAGAGATGGTCAATTGGAT
ATGATGATGCATCGTCGTACTTTGAAAGATGATGGTCGTGGTGTTGGTCAACCAATGAAT
GAGTCAACTCAAATCGTTACAACTAGTAAATTGATTTTCCATGATATTTCAAGTTATGCT
CAATCTCATTATCGTCCTGCTGCACTCTCTTTATCACATCCATTACTCCCAATGTTTACA
ACCACTCAACAATCTTCAAACGATTGGAATTCTCAATATCAAGGTGTTTACTCACCATTG
ACTTCAGCCTCACCTTTACCAAATGGTTTAAAGATTCAAACTCTACAATGGTTAGATAAT
CAAGATAATACCATACTTTTACGTATTGAAAATATTTATCAAATTGATGGTCAAGATTCA
CAAGATCCACAAACTATCACTTTAGATCTTTCAACTATCTTTTCAACAATTACAATCACT
TCTGCAACTGAAATGAATTTAACTGGTGTTCAAAAATTATCAAATTTATCAAGATTAAAA
TGGAAAACTGTTGATGGTAAAAACTATGATCATAAATCATCATCATCAACTAAAGAAGAT
TCTTCAAAGGTTTTGTTTTTACTTTTTCTCCAATGCAAATCAGAACTTTTAAATTACTA
Length of 3' end seq. 779
Connected seq. ID VHE212P
Connected seq.
>VHE212P.Seq
AACACACATAAAAATGGTAATAAAAAAATTATTTATATTAATTTTTTGTTTGTTTTTAAT
TATCAATGAAATTAATGGAAAAAAAACAAAAATAAATGATATTAAAAAATCAAAACCAAA
ACTATCATCAACATTATTAAATGTTCATATTGTTGCTCATACTCATGATGATGTTGGTTG
GTTAAAAACAGTTGATGAATATTATTATGGATCAAATATGTCAATTGCATTTGCAGGTGT
TCAATATACTTTGGATACAGCCATTACCTGTTTATTGGCAAATCCAGAAAGAAAGTTTAT
TTATGTTGAAATTGCATTTTTCCAAAGATGGTGGGATGAACAAAGTACAACAATGCAAAA
TATTGTTAAGGGTTTGGTTGAAAGTGGTCAATTGGAATTCATAAATGGTGGGTATTGTAT
GAATGATGAGGCTACTACCTACTATGACGATACTATTGACCAAATGACATTGGGCCATCA
ATTCCTTTGGGAGAATTTCGGAGTTATGCCAAAGATAGGCTGGCACATAGATCCATTTGG
CCATAGTGCAACACAAGCTCGTATCTTTGGTCAATTAGGATTCGATGCATTCATTATCGG
TCGTATGGA----------TAACCAACTATCGTCCATCATGGAATTTAACCGTGGTTCAA
CCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTACATTCAAGATCCTAATCAA
TCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTGCATCGTTAAGAGATGGT
CAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATGGTCGTGGTGTTGGTCAA
CCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGATTTTCCATGATATTTCA
AGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTATCACATCCATTACTCCCA
ATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTCAATATCAAGGTGTTTAC
TCACCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAAGATTCAAACTCTACAATGG
TTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAATATTTATCAAATTGATGGT
CAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAACTATCTTTTCAACAATT
ACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAAAATTATCAAATTTATCA
AGATTAAAATGGAAAACTGTTGATGGTAAAAACTATGATCATAAATCATCATCATCAACT
AAAGAAGATTCTTCAAAGGTTTTGTTTTTACTTTTTCTCCAATGCAAATCAGAACTTTTA
AATTACTA
Length of connected seq. 1378
Full length Seq ID -
Full length Seq. -
Length of full length seq. -