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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE211
Library VH
(Link to library)
Clone ID VHE211
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID VHE211P
(Link to Original site)
Representative DNA sequence 
>VHE211 (VHE211Q) /CSM/VH/VHE2-A/VHE211Q.Seq.d/
ACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAACAT
AAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGCTT
ATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGATT
TCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAGTT
TTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTCTT
ACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTACT
ATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATATC
AGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATACTGTT
ATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGTGGT
GAATTTACCATTGCTCTCGATCATACCGAACCAXXXXXXXXXXATTCATTGAAGGTCTCA
AGAAGAAGAATCTTGAAGTCATTTACATGTGTGACCCAATTGATGAATATGCTGTTCAAC
AATTAAAAGAATATGACGGTAAGAAATTAGTATCAATTACCAAAGAAGGTTTGAAATTAG
ATGAAACCGAAGATGAAAAGAAAAAAGCTGAACAAGATAAAGCTGCCAATGAAGAATTAC
TCAAACAAGTTAAAGATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTC
TTGCCAACTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAAC
GTATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGA
AAACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCG
AAAAAAGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTT
CAGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAAT
TAGGTTTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAA
CCAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAATGGAAAAAGTCG
ACTAGATTTAATTACTAGCCCTTTTGCTATCAATTTTTGGAATATTGTTATATTATTATA
ATAAAATAAATTTTAAAAAAAATCTTCAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
tfrsyilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLRELI
SNASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGT
IARSGTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSAGG
EFTIALDHTEP---

---FIEGLKKKNLEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGLKLDETEDEKKKAEQ
DKAANEELLKQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSS
MSSYMSSKKTLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETALLTSGFSLDEPSSFA
SRIHRMIKLGLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEMEKVD*i*llalllsi
fgillyyynkinfkknlqi
Translated Amino Acid sequence (All Frames) 
Frame A:
tfrsyilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLRELI
SNASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGT
IARSGTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSAGG
EFTIALDHTEP---

---ih*rsqeees*shlhv*pn**iccstikri*r*eisinyqrrfeir*nrr*keks*t
r*scq*ritqts*rcig**s*kgsslnsscqltmcfsyl*iwlvskhgtyhessssp*lf
nviihvikenfriksrspnr*rfsqksrrkk*nfqrlcllii*ncslnfrflir*tiiic
ftyssyd*irfkhsr*fisnn*rinkhnnq**ystirrkr*ti*ngksrldlitspfain
fwnivill**nkf*kkssn

Frame B:
hlgpif*fiinficffl*nikkwlnhklnvshsklklislcplllilfiqikkyf*en*f
qmhlmp*ikfvtnh*lmhqfwnqklnsklklfqirlpkllhslivvlv*pkpiw*ri*vl
llvqvlktlwnnykvvplisv*lvnlvlvstllt*lpilllftlktmmmnntfgnqvlvv
nlpllsiipn---

---FIEGLKKKNLEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGLKLDETEDEKKKAEQ
DKAANEELLKQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSS
MSSYMSSKKTLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETALLTSGFSLDEPSSFA
SRIHRMIKLGLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEMEKVD*i*llalllsi
fgillyyynkinfkknlqi

Frame C:
i*vlysns*lilfvffcrt*kng*its*tfhips*n*sayvpyy*yflfk*rsifkridf
kci*clr*nslpiin*cisfgikn*trn*nysr*dcqnsyth**wywydqnrygkefryy
csfry*klygtitkwcr*yqydwsiwcwfllcllscrycycsl*kq***tirlgikcww*
iyhcsrsyrt---

---slkvsrrrilksftcvtqlmnmlfnn*knmtvrn*yqlpkkv*n*mkpkmkrkklnk
iklpmknysnklkmywviklkr*fsqlvlpthhvf*lplnmvgqqtwnvs*klklsvtlq
chhtchqrkl*n*iqitqslei*pkkppkkvklsktlftyymklls*lqvsh*mnhhhll
hvfiv*ln*v*afkmihqqqlknqqtqqpvmifhh*kktmnhlkwkkstrfny*pfcyqf
leycyiiiik*ilkkifk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/                       1041   0.0
VHP152 (VHP152Q) /CSM/VH/VHP1-C/VHP152Q.Seq.d/                       1041   0.0
VHM703 (VHM703Q) /CSM/VH/VHM7-A/VHM703Q.Seq.d/                       1041   0.0
VHL421 (VHL421Q) /CSM/VH/VHL4-A/VHL421Q.Seq.d/                       1041   0.0
VHK487 (VHK487Q) /CSM/VH/VHK4-D/VHK487Q.Seq.d/                       1041   0.0
VHK280 (VHK280Q) /CSM/VH/VHK2-D/VHK280Q.Seq.d/                       1041   0.0
VHJ821 (VHJ821Q) /CSM/VH/VHJ8-A/VHJ821Q.Seq.d/                       1041   0.0
VHI607 (VHI607Q) /CSM/VH/VHI6-A/VHI607Q.Seq.d/                       1041   0.0
VHH869 (VHH869Q) /CSM/VH/VHH8-C/VHH869Q.Seq.d/                       1041   0.0
VHH735 (VHH735Q) /CSM/VH/VHH7-B/VHH735Q.Seq.d/                       1041   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds.  1003   0.0    2
L34027|L34027.1 Plasmodium falciparum (clone Dd2) heat shock protein 86 gene, complete cds.    98   2e-53  9
L34028|L34028.1 Plasmodium falciparum (clone HB3) heat shock protein 86 gene, complete cds.    98   2e-53  8
Z29667|Z29667.1 P.falciparum (7) mRNA for heat-shock protein.      98   3e-51  8
AF030694|AF030694.2 Plasmodium falciparum strain Dd2 heat shock protein 86 (HSP86), O1 (o1), O3 (o3), O2 (o2), CG8 (cg8), CG4 (cg4), CG3 (cg3), putative chloroquine resistance transporter (crt), CG9 (cg9), CG1 (cg1), CG6 (cg6), CG2 (cg2), and CG7 (cg7) genes, complete cds.    98   3e-49  11
AJ890081|AJ890081.1 Delia antiqua mRNA for Hsp90 protein.          72   2e-48  8
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    80   7e-47  10
AF249998|AF249998.1 Habrotrocha constricta 82 kDa heat shock protein 2 (hsp82-2) gene, partial cds.    88   2e-46  4
AY122634|AY122634.1 Naegleria gruberi strain ATCC 30224 heat shock protein 90 (HSP-90) gene, partial cds.    86   3e-46  7
AF143854|AF143854.1 Sinantherina socialis 82 kD heat shock protein (hsp82) gene, partial cds.    78   2e-42  4
dna update 2007. 6.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein;             328   3e-88
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1....   328   3e-88
AB300196_1(AB300196|pid:none) Physarum polycephalum hsp90 mRNA f...   260   9e-68
FJ392027_1(FJ392027|pid:none) Portunus trituberculatus heat shoc...   254   7e-66
(P04810) RecName: Full=Heat shock protein 83; AltName: Full=HSP ...   252   2e-65
AY851367_1(AY851367|pid:none) Liriomyza huidobrensis heat shock ...   252   2e-65
U57467_1(U57467|pid:none) Drosophila melanogaster heat shock pro...   252   2e-65
(P04811) RecName: Full=Heat shock protein 83; AltName: Full=HSP ...   252   2e-65
U57459_1(U57459|pid:none) Drosophila melanogaster heat shock pro...   252   2e-65
EU306519_1(EU306519|pid:none) Mythimna separata Hsp90 mRNA, comp...   252   2e-65
protein update 2009. 6.30
PSORT 

 psg: 0.50  gvh: 0.46  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHE211 is cyt
5' end seq. ID VHE211F
5' end seq. 
>VHE211F.Seq
ACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAACAT
AAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGCTT
ATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGATT
TCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAGTT
TTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTCTT
ACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTACT
ATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATATC
AGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATACTGTT
ATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGTGGT
GAATTTACCATTGCTCTCGATCATACCGAACCANNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID VHE211Z
3' end seq. 
>VHE211Z.Seq
NNNNNNNNNNATTCATTGAAGGTCTCAAGAAGAAGAATCTTGAAGTCATTTACATGTGTG
ACCCAATTGATGAATATGCTGTTCAACAATTAAAAGAATATGACGGTAAGAAATTAGTAT
CAATTACCAAAGAAGGTTTGAAATTAGATGAAACCGAAGATGAAAAGAAAAAAGCTGAAC
AAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGTTAAAGATGTATTGGGTGATAAAG
TTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGTTACCTCTG
AATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCGTGACTCTT
CAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCACCCAATCG
TTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTTTGTTTACT
TATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATCATCATTTG
CTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTCATCAGCAA
CAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGAAGAAAACG
ATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTTGCTATCAA
TTTTTGGAATATTGTTATATTATTATAATAAAATAAATTTTAAAAAAAATCTTCAAATA
Length of 3' end seq. 779
Connected seq. ID VHE211P
Connected seq. 
>VHE211P.Seq
ACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAACAT
AAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGCTT
ATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGATT
TCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAGTT
TTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTCTT
ACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTACT
ATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATATC
AGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATACTGTT
ATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGTGGT
GAATTTACCATTGCTCTCGATCATACCGAACCA----------ATTCATTGAAGGTCTCA
AGAAGAAGAATCTTGAAGTCATTTACATGTGTGACCCAATTGATGAATATGCTGTTCAAC
AATTAAAAGAATATGACGGTAAGAAATTAGTATCAATTACCAAAGAAGGTTTGAAATTAG
ATGAAACCGAAGATGAAAAGAAAAAAGCTGAACAAGATAAAGCTGCCAATGAAGAATTAC
TCAAACAAGTTAAAGATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTC
TTGCCAACTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAAC
GTATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGA
AAACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCG
AAAAAAGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTT
CAGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAAT
TAGGTTTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAA
CCAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAATGGAAAAAGTCG
ACTAGATTTAATTACTAGCCCTTTTGCTATCAATTTTTGGAATATTGTTATATTATTATA
ATAAAATAAATTTTAAAAAAAATCTTCAAATA
Length of connected seq. 1342
Full length Seq ID -
Full length Seq. -
Length of full length seq. -