VHE208 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHE208
Library	VH (Link to library)
Clone ID	VHE208 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15722-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHE2-A/VHE208Q.Seq.d/
Representative seq. ID	VHE208P (Link to Original site)
Representative DNA sequence	>VHE208 (VHE208Q) /CSM/VH/VHE2-A/VHE208Q.Seq.d/ TTGGCCTACTGGAAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAA TAAGTAAGAATAAAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTA TTAAAGATCAATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATC AAATTTGATGTCTTACAAACATATGGTGTTGGTTTTCATTACTCATATTTAAGTGTTATT TTTACAACTTGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGA TCATATTCAATTGTTCCTCGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACAT AGTTATAGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAAT GATTGCAAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCC GATTCATTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACA CTCTCTTCACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCA TGTAATGTGAAAAGTGGTTGGTGTACTTGTGATGGTAAXXXXXXXXXXGGTAATNGGAAC ANGCCANAAAGGACCATTTGGGTAAANGGTTGGAATTTTANTCNGATGCCCANTNGGATT NGTTNGACACCAAATGGNACTTGTGATAATAANACTGGTAATTGNACAATGCNATAATGA ACCATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTNGGACACCAAAT GGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGT TGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAAT AGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATT GAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGT AAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCA TTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACA ACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAAT GAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATT GATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAA ATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTT TCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAATCTTTTC TTCTAAAAACTAAAATAAAATTTAACCATTAG
sequence update	2002.10.25
Translated Amino Acid sequence	laywkisikkrkkhtkikVRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNI KFDVLQTYGVGFHYSYLSVIFTTCNYTIPCGSNSNNVLCGSYSIVPRKYLSLGFVNGSTH SYSKDGLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFT LSSRTVCQTCPNCLKTHQTSCNVKSGWCTCDG--- ---GNXNXPXRTIWVXGWNFXXMPXXIXXTPNGTCDNXTGNXTMXtilvilvnlldvh sivxtpngtcdnntgnctchnehfgngceftqcplycstpngtcdinsgictcdnehign gceikfieckhkcstkhgicdndsgnckcdtqtkgltceesrlliesldsinskggtini igyfgnttslltikigesqcknikvfnettlkcdigegkgihnitiidddlsftainkfq yldektkiskisrgaiagivvgcvvavsligsiafyyhhknkkvnlffklk*nlti
Translated Amino Acid sequence (All Frames)	Frame A: laywkisikkrkkhtkikVRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNI KFDVLQTYGVGFHYSYLSVIFTTCNYTIPCGSNSNNVLCGSYSIVPRKYLSLGFVNGSTH SYSKDGLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFT LSSRTVCQTCPNCLKTHQTSCNVKSGWCTCDG--- ---GNXNXPXRTIWVXGWNFXXMPXXIXXTPNGTCDNXTGNXTMXtilvilvnlldvh sivxtpngtcdnntgnctchnehfgngceftqcplycstpngtcdinsgictcdnehign gceikfieckhkcstkhgicdndsgnckcdtqtkgltceesrlliesldsinskggtini igyfgnttslltikigesqcknikvfnettlkcdigegkgihnitiidddlsftainkfq yldektkiskisrgaiagivvgcvvavsligsiafyyhhknkkvnlffklknlti Frame B: wptgkfqfkknkgkntpklnkekniyyiytyyyfvyrsiaksialivvlekiiis nlmsykhmvlvfithivlflqlviilflvvvivimycvdhiqlflasifhwdllmavhi viaktd*hiyhriqqmimiakdiqqmffnvdqmvmypihmlastiyllihvllnsh slhvqcvkhvqtvkhikhhvmkvvgvlvmv--- ---vxgtxxkgpfgxvgilxxcpxgxvxhqmxlviixlvixqcxnepfwfliysmst rlxghqmvlviiilvivhaimnilvmvvnslnahsivqhqmvlvilivvfvhvimnilvm vaklnllnvninvqpnmeyvimivvivnvilkqkdrvknqdylnhtqsiqkvvqi* lvileiqhhyqlklvnhnvkiskysmkqhnvilvkvkvfiilqslmmtfrsqqsissn ismkkqksqkyrevqllvlllvvlllfhlvlllfiiitkikrlifssknnkipl Frame C: gllenfnlkkikekthqnisknkneifisifthitilfikdqpkvlhlwcwrrlyq icltniwcwfsllifkcyfynllyyslw***civwiifncssqvsfigicwqyt* lqrrtndniyitgynk*lqkiynkcdfsmtrwcirfircwhrqytyfmyciht lftysvsnmsklfkntsnimcekwlvylw--- ---xexaxkdhlgkxlefxsdaxxdxxdtkwxl*xwlxnaimnhfgnsceftrcpl dcxdtkwyl**ywlymp*tfwwlihsmptllfntkwylywylymtyww lrniymtmfnqtwnm***wlmysnkrinvrikiiniirlnqfkrwynkyn wlfwkyniiinnnwitmkyqsiqnnikmywrrysyynh**pfvhsnqvpi srknknlkniercncwyccwlccccfinwfycfllssqkkgsfllktkikfnh
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHE208 (VHE208Q) /CSM/VH/VHE2-A/VHE208Q.Seq.d/ 2476 0.0 VHI712 (VHI712Q) /CSM/VH/VHI7-A/VHI712Q.Seq.d/ 1207 0.0 VHQ484 (VHQ484Q) /CSM/VH/VHQ4-D/VHQ484Q.Seq.d/ 1201 0.0 VHQ143 (VHQ143Q) /CSM/VH/VHQ1-B/VHQ143Q.Seq.d/ 1201 0.0 VHP548 (VHP548Q) /CSM/VH/VHP5-B/VHP548Q.Seq.d/ 1201 0.0 VHP510 (VHP510Q) /CSM/VH/VHP5-A/VHP510Q.Seq.d/ 1201 0.0 VHP265 (VHP265Q) /CSM/VH/VHP2-C/VHP265Q.Seq.d/ 1201 0.0 VHO766 (VHO766Q) /CSM/VH/VHO7-C/VHO766Q.Seq.d/ 1201 0.0 VHO168 (VHO168Q) /CSM/VH/VHO1-C/VHO168Q.Seq.d/ 1201 0.0 VHL559 (VHL559Q) /CSM/VH/VHL5-C/VHL559Q.Seq.d/ 1201 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116924\|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 90 6e-40 8 AC115592\|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 92 9e-37 7 AC117076\|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 117 3e-30 12 AY392441\|AY392441.1 Dictyostelium discoideum possible blackjack gene, complete cds. 80 2e-10 1 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 54 8e-07 2 AC115683\|AC115683.2 Dictyostelium discoideum chromosome 2 map complement(6135149-6105997) strain AX4, complete sequence. 54 4e-05 5 AP007175\|AP007175.1 Aspergillus oryzae RIB40 genomic DNA, SC010. 62 5e-05 1 AC175883\|AC175883.1 Strongylocentrotus purpuratus clone R3-3043D16, WORKING DRAFT SEQUENCE, 40 unordered pieces. 36 0.41 2 AC175936\|AC175936.1 Strongylocentrotus purpuratus clone R3-17A24, WORKING DRAFT SEQUENCE, 34 unordered pieces. 36 0.42 2 AC201360\|AC201360.1 Strongylocentrotus purpuratus clone R3-17B23, WORKING DRAFT SEQUENCE, 18 unordered pieces. 36 0.42 2
dna update	2007. 6.28
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC117075_64(AC117075\|pid:none) Dictyostelium discoideum chromoso... 125 3e-27 AC116100_9(AC116100\|pid:none) Dictyostelium discoideum chromosom... 108 4e-22 AC116920_20(AC116920\|pid:none) Dictyostelium discoideum chromoso... 96 5e-18 AC116967_7(AC116967\|pid:none) Dictyostelium discoideum chromosom... 94 2e-17 AC116920_24(AC116920\|pid:none) Dictyostelium discoideum chromoso... 93 3e-17 AC116963_42(AC116963\|pid:none) Dictyostelium discoideum chromoso... 92 4e-17 AC116920_25(AC116920\|pid:none) Dictyostelium discoideum chromoso... 91 1e-16 AC116967_8(AC116967\|pid:none) Dictyostelium discoideum chromosom... 90 2e-16 AC117081_39(AC117081\|pid:none) Dictyostelium discoideum chromoso... 89 6e-16 AC116956_34(AC116956\|pid:none) Dictyostelium discoideum chromoso... 86 3e-15
protein update	2009. 6.30
PSORT	psg: 0.93 gvh: 0.70 alm: 0.39 top: 0.40 tms: 0.00 mit: 0.32 mip: 0.02 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: extracellular, including cell wall 12.0 %: mitochondrial 12.0 %: vacuolar 8.0 %: cytoplasmic 8.0 %: nuclear 8.0 %: endoplasmic reticulum 4.0 %: Golgi >> prediction for VHE208 is exc
5' end seq. ID	VHE208F
5' end seq.	>VHE208F.Seq TTGGCCTACTGGAAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAA TAAGTAAGAATAAAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTA TTAAAGATCAATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATC AAATTTGATGTCTTACAAACATATGGTGTTGGTTTTCATTACTCATATTTAAGTGTTATT TTTACAACTTGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGA TCATATTCAATTGTTCCTCGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACAT AGTTATAGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAAT GATTGCAAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCC GATTCATTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACA CTCTCTTCACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCA TGTAATGTGAAAAGTGGTTGGTGTACTTGTGATGGTAANNNNNNNNNN
Length of 5' end seq.	648
3' end seq. ID	VHE208Z
3' end seq.	>VHE208Z.Seq NNNNNNNNNNGGTAATNGGAACANGCCANAAAGGACCATTTGGGTAAANGGTTGGAATTT TANTCNGATGCCCANTNGGATTNGTTNGACACCAAATGGNACTTGTGATAATAANACTGG TAATTGNACAATGCNATAATGAACCATTTTGGTAATTCTTGTGAATTTACTCGATGTCCA CTCGATTGTTNGGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCA TAATGAACATTTTGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACC AAATGGTACTTGTGATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAA TGGTTGCGAAATTAAATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATG TGATAATGATAGTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGA ATCAAGATTATTAATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATAT AATTGGTTATTTTGGAAATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATG TAAAAATATCAAAGTATTCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGG TATTCATAATATTACAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCA ATATCTCGATGAAAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGT TGTTGGTTGTGTTGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAA AAATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTAG
Length of 3' end seq.	894
Connected seq. ID	VHE208P
Connected seq.	>VHE208P.Seq TTGGCCTACTGGAAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAA TAAGTAAGAATAAAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTA TTAAAGATCAATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATC AAATTTGATGTCTTACAAACATATGGTGTTGGTTTTCATTACTCATATTTAAGTGTTATT TTTACAACTTGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGA TCATATTCAATTGTTCCTCGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACAT AGTTATAGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAAT GATTGCAAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCC GATTCATTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACA CTCTCTTCACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCA TGTAATGTGAAAAGTGGTTGGTGTACTTGTGATGGTAA----------GGTAATNGGAAC ANGCCANAAAGGACCATTTGGGTAAANGGTTGGAATTTTANTCNGATGCCCANTNGGATT NGTTNGACACCAAATGGNACTTGTGATAATAANACTGGTAATTGNACAATGCNATAATGA ACCATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTNGGACACCAAAT GGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGT TGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAAT AGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATT GAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGT AAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCA TTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACA ACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAAT GAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATT GATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAA ATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTT TCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAATCTTTTC TTCTAAAAACTAAAATAAAATTTAACCATTAG
Length of connected seq.	1522
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas