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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE195
Library VH
(Link to library)
Clone ID VHE195
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16390-1
Original site URL
Representative seq. ID VHE195P
(Link to Original site)
Representative DNA sequence 
>VHE195 (VHE195Q) /CSM/VH/VHE1-D/VHE195Q.Seq.d/
AAATAAAAGAAAAAGAAAATGAGATTATTATTATTATTAATTTTAATAATAACAATTAAT
TTTAGTTATGGTGTATTAACACCTAAAAATTTAGCAGGTGAAGCAAGTGAATTTGGTTCA
TTTAATATTCCAAATCCAATGGATGTAGCACAAAGTAGTGATAGTTCATTATTTGGTATT
TCAATGACACAAAGCCAATTGAAAAATTCATTTGAATGGTCAGGAGTTGTACCAGTTGAT
TCAGAAGAAGAATTTACATTAACATTCTTTTCAAGTTTTCCATTAAGTGAATTTAAAGTT
GAAGCATCACCAAAAACTTCATTATCATCTTCCAAATCAGAATCAGAACATAAATCAAAA
TTCTATAAGGTGATTAAATCAATATATCAAACACCAACCGTTACCAATGGTTCATTTGGT
ATTGATGGTGCAACAACTCCATCATTTAGTTTAACATGGGATAAACCAGTTGTTGGAGAT
TGGAATGTTGTAATCACAGCCTCATCATCATTAAGAAAGAATGAAAAATTCCAAAAGATG
GTAGAAGATTCAACACCTCAATTGTTAATGTTGGTTCAAAATCCAAGTGATACTCATATC
TACTCTTATGTATCATCATACAATAATTTATTCACAGGTCAAAAAGXXXXXXXXXXTTAC
ACATGGTTATTGTAGTGAAGGTGTTTGGCCAATTGAGGATTTTGAAAATTCTGTAGAGTT
CCAAGATTTTAATCAAAATCGTGGTAATGATGAATTTGCTCAAATACTTGCCAATTTCGG
TAGCCAATATACCGATGGTTTTTCACTTGTTGCTCATAGTCAAGGTGGTAACGCTGCTCT
TCACCTNGTAACATTCTATTTCAGTGGACTTGATCTTTNTCAAAAACTTGAAGGTCGTGT
CATTCAATCAATGGGTACTCCATACCAAGGTACTGCTCTCGCTGGTACTTGGGCTTCTAT
TGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAATGATGATCTCACTGTTGATGGTGCCGC
TTTATGGTTAAAATCAATTCCAGCAGATAAAAGAGCTTTAGTTTATTATACAACTACTCA
ATATAGTACTGGTTCTTTAATTAATTATTGTAATTTGGCTTCCAATGCAGTNTTAGAATG
GCCAAATGATGGTGTTGTTGATAATGAGCATACTCCACTCGAAGGTGGTGTATATTTAAA
TAACTTTAAAGACTGGTGTCACTCTGATGGTATGCACTCACCACAACAAACTACAAATAC
NGAATATAACAAAGAAATGAGTTCCAACTCTGTTTGGTAAACTACTTTGTATTATTTTTT
TTTTCTCTACAATAATTGTAATAAAATCGATTTATATTAAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
k*KKKKMRLLLLLILIITINFSYGVLTPKNLAGEASEFGSFNIPNPMDVAQSSDSSLFGI
SMTQSQLKNSFEWSGVVPVDSEEEFTLTFFSSFPLSEFKVEASPKTSLSSSKSESEHKSK
FYKVIKSIYQTPTVTNGSFGIDGATTPSFSLTWDKPVVGDWNVVITASSSLRKNEKFQKM
VEDSTPQLLMLVQNPSDTHIYSYVSSYNNLFTGQK---

---THGYCSEGVWPIEDFENSVEFQDFNQNRGNDEFAQILANFGSQYTDGFSLVAHSQGG
NAALHLVTFYFSGLDLXQKLEGRVIQSMGTPYQGTALAGTWASIGSAVGVGCSANDDLTV
DGAALWLKSIPADKRALVYYTTTQYSTGSLINYCNLASNAVLEWPNDGVVDNEHTPLEGG
VYLNNFKDWCHSDGMHSPQQTTNTEYNKEMSSNSVW*ttlyyffflynncnkidly*i
Translated Amino Acid sequence (All Frames) 
Frame A:
k*KKKKMRLLLLLILIITINFSYGVLTPKNLAGEASEFGSFNIPNPMDVAQSSDSSLFGI
SMTQSQLKNSFEWSGVVPVDSEEEFTLTFFSSFPLSEFKVEASPKTSLSSSKSESEHKSK
FYKVIKSIYQTPTVTNGSFGIDGATTPSFSLTWDKPVVGDWNVVITASSSLRKNEKFQKM
VEDSTPQLLMLVQNPSDTHIYSYVSSYNNLFTGQK---

---lhmvivvkvfgqlrilkil*sskilikivvmmnllkylpisvanipmvfhlllivkv
vtllftx*hsisvdlifxknlkvvsfnqwvlhtkvllslvlglllvvl*vlvvlqmmisl
lmvplyg*nqfqqikel*fiiqllnivlvl*liiviwlpmqx*ngqmmvllimsilhskv
vyi*itlktgvtlmvcthhnklqixnitkk*vptlfgkllciifffstiiviksiyik

Frame B:
nkrkrk*dyyyy*f***qlilvmvy*hlki*qvkqvnlvhlifqiqwm*hkvvivhylvf
q*hkan*kihlngqelyqliqkknlh*hsfqvfh*vnlklkhhqklhyhlpnqnqninqn
sir*lnqyikhqplpmvhlvlmvqqlhhlv*hginqlleigml*sqphhh*ermknskrw
*kiqhlnc*cwfkiqvilistlmyhhtiiysqvkk---

---ytwll**rclan*gf*kfcrvprf*sksw***icsntcqfr*piyrwfftccs*srw
*rcsspxnilfqwt*sxskt*rschsingysiprycsrwylgfyw*ccrcwlfck**shc
*wcrfmvkinssr*ksfsllynysi*ywffn*ll*fgfqcsxrmak*wcc***aystrrw
cifk*l*rlvsl*wyaltttnykyxi*qrnefqlclvnyfvlfffslq*l**nrfiln

Frame C:
ikekeneiiiiinfnnnn*f*lwcint*kfsr*sk*iwfi*ysksngcstk***fiiwyf
ndtkpiekfi*mvrscts*frrriyinilfkfsik*i*s*sitknfiiifqirirt*iki
l*gd*inisntnryqwfiwy*wcnnsii*fnmg*tscwrleccnhsliiikke*kipkdg
rrfntsivnvgsksk*ysylllciiiq*fihrsk---

---THGYCSEGVWPIEDFENSVEFQDFNQNRGNDEFAQILANFGSQYTDGFSLVAHSQGG
NAALHLVTFYFSGLDLXQKLEGRVIQSMGTPYQGTALAGTWASIGSAVGVGCSANDDLTV
DGAALWLKSIPADKRALVYYTTTQYSTGSLINYCNLASNAVLEWPNDGVVDNEHTPLEGG
VYLNNFKDWCHSDGMHSPQQTTNTEYNKEMSSNSVW*ttlyyffflynncnkidly*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ437 (VHQ437Q) /CSM/VH/VHQ4-B/VHQ437Q.Seq.d/                       1308   0.0
VHP806 (VHP806Q) /CSM/VH/VHP8-A/VHP806Q.Seq.d/                       1308   0.0
VHP701 (VHP701Q) /CSM/VH/VHP7-A/VHP701Q.Seq.d/                       1308   0.0
VHP671 (VHP671Q) /CSM/VH/VHP6-C/VHP671Q.Seq.d/                       1308   0.0
VHP580 (VHP580Q) /CSM/VH/VHP5-D/VHP580Q.Seq.d/                       1308   0.0
VHO841 (VHO841Q) /CSM/VH/VHO8-B/VHO841Q.Seq.d/                       1308   0.0
VHO695 (VHO695Q) /CSM/VH/VHO6-D/VHO695Q.Seq.d/                       1308   0.0
VHO642 (VHO642Q) /CSM/VH/VHO6-B/VHO642Q.Seq.d/                       1308   0.0
VHN848 (VHN848Q) /CSM/VH/VHN8-B/VHN848Q.Seq.d/                       1308   0.0
VHO804 (VHO804Q) /CSM/VH/VHO8-A/VHO804Q.Seq.d/                       1306   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1114   0.0    1
Z11691|Z11691.1 Dictyostelium discoideum mRNA for Conditioned medium factor.   555   0.0    6
BX842599|BX842599.1 Neurospora crassa DNA linkage group II BAC clone B10A24.    48   0.67   1
EJ792093|EJ792093.1 1093017382067 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002737898 5', genomic survey sequence.    42   0.85   2
EJ863502|EJ863502.1 1093018230555 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002737898 3', genomic survey sequence.    42   0.99   2
DY299389|DY299389.1 IC0AAA98BA06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.    46   2.7    1
DW054739|DW054739.1 CLLX7293.b1_J24.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX7293, mRNA sequence.    46   2.7    1
DW048907|DW048907.1 CLLX1655.b1_N05.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX1655, mRNA sequence.    46   2.7    1
DV208674|DV208674.1 0089P0115Z_D09_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0115Z_D09 3', mRNA sequence.    46   2.7    1
AC155136|AC155136.2 Bos taurus clone CH240-42A22, WORKING DRAFT SEQUENCE, 8 unordered pieces.    46   2.7    1
dna update 2007. 6.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM920689_339(AM920689|pid:none) Xanthomonas campestris pv. campe...   209   2e-52
CP000050_316(CP000050|pid:none) Xanthomonas campestris pv. campe...   207   7e-52
AE008922_313(AE008922|pid:none) Xanthomonas campestris pv. campe...   207   7e-52
AM039952_339(AM039952|pid:none) Xanthomonas campestris pv. vesic...   206   1e-51
AB302139_1(AB302139|pid:none) Uncultured bacterium plaM8 gene fo...    38   0.98
AB302138_1(AB302138|pid:none) Uncultured bacterium plaM7 gene fo...    38   0.98
CP001034_767(CP001034|pid:none) Natranaerobius thermophilus JW/N...    37   1.7
AM270302_47(AM270302|pid:none) Aspergillus niger contig An13c008...    35   4.8
AF440781_31(AF440781|pid:none) Streptomyces cinnamonensis polyet...    35   6.3
protein update 2009. 6.30
PSORT 

 psg: 1.00  gvh: 0.65  alm: 0.40  top: 0.07  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VHE195 is exc
5' end seq. ID VHE195F
5' end seq. 
>VHE195F.Seq
AAATAAAAGAAAAAGAAAATGAGATTATTATTATTATTAATTTTAATAATAACAATTAAT
TTTAGTTATGGTGTATTAACACCTAAAAATTTAGCAGGTGAAGCAAGTGAATTTGGTTCA
TTTAATATTCCAAATCCAATGGATGTAGCACAAAGTAGTGATAGTTCATTATTTGGTATT
TCAATGACACAAAGCCAATTGAAAAATTCATTTGAATGGTCAGGAGTTGTACCAGTTGAT
TCAGAAGAAGAATTTACATTAACATTCTTTTCAAGTTTTCCATTAAGTGAATTTAAAGTT
GAAGCATCACCAAAAACTTCATTATCATCTTCCAAATCAGAATCAGAACATAAATCAAAA
TTCTATAAGGTGATTAAATCAATATATCAAACACCAACCGTTACCAATGGTTCATTTGGT
ATTGATGGTGCAACAACTCCATCATTTAGTTTAACATGGGATAAACCAGTTGTTGGAGAT
TGGAATGTTGTAATCACAGCCTCATCATCATTAAGAAAGAATGAAAAATTCCAAAAGATG
GTAGAAGATTCAACACCTCAATTGTTAATGTTGGTTCAAAATCCAAGTGATACTCATATC
TACTCTTATGTATCATCATACAATAATTTATTCACAGGTCAAAAAGNNNNNNNNNN
Length of 5' end seq. 656
3' end seq. ID VHE195Z
3' end seq. 
>VHE195Z.Seq
NNNNNNNNNNTTACACATGGTTATTGTAGTGAAGGTGTTTGGCCAATTGAGGATTTTGAA
AATTCTGTAGAGTTCCAAGATTTTAATCAAAATCGTGGTAATGATGAATTTGCTCAAATA
CTTGCCAATTTCGGTAGCCAATATACCGATGGTTTTTCACTTGTTGCTCATAGTCAAGGT
GGTAACGCTGCTCTTCACCTNGTAACATTCTATTTCAGTGGACTTGATCTTTNTCAAAAA
CTTGAAGGTCGTGTCATTCAATCAATGGGTACTCCATACCAAGGTACTGCTCTCGCTGGT
ACTTGGGCTTCTATTGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAATGATGATCTCACT
GTTGATGGTGCCGCTTTATGGTTAAAATCAATTCCAGCAGATAAAAGAGCTTTAGTTTAT
TATACAACTACTCAATATAGTACTGGTTCTTTAATTAATTATTGTAATTTGGCTTCCAAT
GCAGTNTTAGAATGGCCAAATGATGGTGTTGTTGATAATGAGCATACTCCACTCGAAGGT
GGTGTATATTTAAATAACTTTAAAGACTGGTGTCACTCTGATGGTATGCACTCACCACAA
CAAACTACAAATACNGAATATAACAAAGAAATGAGTTCCAACTCTGTTTGGTAAACTACT
TTGTATTATTTTTTTTTTCTCTACAATAATTGTAATAAAATCGATTTATATTAAATT
Length of 3' end seq. 717
Connected seq. ID VHE195P
Connected seq. 
>VHE195P.Seq
AAATAAAAGAAAAAGAAAATGAGATTATTATTATTATTAATTTTAATAATAACAATTAAT
TTTAGTTATGGTGTATTAACACCTAAAAATTTAGCAGGTGAAGCAAGTGAATTTGGTTCA
TTTAATATTCCAAATCCAATGGATGTAGCACAAAGTAGTGATAGTTCATTATTTGGTATT
TCAATGACACAAAGCCAATTGAAAAATTCATTTGAATGGTCAGGAGTTGTACCAGTTGAT
TCAGAAGAAGAATTTACATTAACATTCTTTTCAAGTTTTCCATTAAGTGAATTTAAAGTT
GAAGCATCACCAAAAACTTCATTATCATCTTCCAAATCAGAATCAGAACATAAATCAAAA
TTCTATAAGGTGATTAAATCAATATATCAAACACCAACCGTTACCAATGGTTCATTTGGT
ATTGATGGTGCAACAACTCCATCATTTAGTTTAACATGGGATAAACCAGTTGTTGGAGAT
TGGAATGTTGTAATCACAGCCTCATCATCATTAAGAAAGAATGAAAAATTCCAAAAGATG
GTAGAAGATTCAACACCTCAATTGTTAATGTTGGTTCAAAATCCAAGTGATACTCATATC
TACTCTTATGTATCATCATACAATAATTTATTCACAGGTCAAAAAG----------TTAC
ACATGGTTATTGTAGTGAAGGTGTTTGGCCAATTGAGGATTTTGAAAATTCTGTAGAGTT
CCAAGATTTTAATCAAAATCGTGGTAATGATGAATTTGCTCAAATACTTGCCAATTTCGG
TAGCCAATATACCGATGGTTTTTCACTTGTTGCTCATAGTCAAGGTGGTAACGCTGCTCT
TCACCTNGTAACATTCTATTTCAGTGGACTTGATCTTTNTCAAAAACTTGAAGGTCGTGT
CATTCAATCAATGGGTACTCCATACCAAGGTACTGCTCTCGCTGGTACTTGGGCTTCTAT
TGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAATGATGATCTCACTGTTGATGGTGCCGC
TTTATGGTTAAAATCAATTCCAGCAGATAAAAGAGCTTTAGTTTATTATACAACTACTCA
ATATAGTACTGGTTCTTTAATTAATTATTGTAATTTGGCTTCCAATGCAGTNTTAGAATG
GCCAAATGATGGTGTTGTTGATAATGAGCATACTCCACTCGAAGGTGGTGTATATTTAAA
TAACTTTAAAGACTGGTGTCACTCTGATGGTATGCACTCACCACAACAAACTACAAATAC
NGAATATAACAAAGAAATGAGTTCCAACTCTGTTTGGTAAACTACTTTGTATTATTTTTT
TTTTCTCTACAATAATTGTAATAAAATCGATTTATATTAAATT
Length of connected seq. 1353
Full length Seq ID -
Full length Seq. -
Length of full length seq. -