VHE192
Library VH
(Link to library)
Clone ID VHE192
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15470-1|Contig-U15950-1
Original site URL
Representative seq. ID VHE192P
(Link to Original site)
Representative DNA sequence
>VHE192 (VHE192Q) /CSM/VH/VHE1-D/VHE192Q.Seq.d/
TACCAAAAGAATTAACTATTGATCAAATTTTACAATCTCTTCCAAAAGAAGTTTTTGAAA
CAAGTAATTTTAAATCAGCATGTTCACTTTTAATAACAATCTTATTCATTGGTTTAAGTG
CAACATTCATTACTCTCATGCCATCTTACTTAACCCCAATTGGTTGGATGTTAATGGGTG
CCTCAGTTACTGGTTTAATGGTAATTGGTAATGATTGTATTCATAAAACTTTTTCAAAGA
ATCCATTAGTTAATTCAATTATTGGAACAATTGTAATGTTACCATTGTTATATCCATTCC
AATCTTACAAGATTTCAGAAAAGAATAATGCAGAAAAGAAATCGACAGCTGTTTTAAATG
GTGAACAATTCAAGATTAATGCACATACCACAACCGAAAGTACAAATCCAATTAGACAAT
GGGCAACTGGTAAATTCTTTTGGATTTTATCAATTATTAATTGGTCTGAAAATTATTTCT
CAACTAAAAATTTATCAGATAAAAAAGATAAAACCAAAGCAATCGTTTCAATTGCAATTG
TTTACATTTTTGGATTTATTTTCTTCCCAATGATGTTTAAATTTGTAGGTGTAAGTGGAT
TCCXXXXXXXXXXATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATCGCCACT
TTTATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGT
GGTTATTTCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTCTTGGTC
AATTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCAAAGGAT
TCAGTTGTGACTGCTATATTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTC
CCAAATGACTATAGAAACGCTTATAAATTCTATCAATATGATCCAACTAAATGGTTGATC
TCTGCAATGTATTATTTAGGCTTGGCTTATGATTTGAAAACTTTCTCCAAAAATGAAATT
GAAAAAGGTATGATTCAAATGCACCAAAAACATTTAGACGCAAAGAAACAATCAATCTAT
TGGGGTATCAATAAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTT
GAAAAAGAAAATAAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATCTTTT
GTTAATGATCACCCAGGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACT
TCAATGTTTACTGGTGAAGTTTATGCTCATTCAAATGCTGCTAAAAATTTATTATGTCAA
TTTTCAATGCTAAAATT
sequence update 2002.10.25
Translated Amino Acid sequence
PKELTIDQILQSLPKEVFETSNFKSACSLLITILFIGLSATFITLMPSYLTPIGWMLMGA
SVTGLMVIGNDCIHKTFSKNPLVNSIIGTIVMLPLLYPFQSYKISEKNNAEKKSTAVLNG
EQFKINAHTTTESTNPIRQWATGKFFWILSIINWSENYFSTKNLSDKKDKTKAIVSIAIV
YIFGFIFFPMMFKFVGVSGF---

---PWVMWQHKHYIKIATFMGLVFPTLVAGLGWGDWAGGYFYSGVLRLVTVQHSTFLVNS
LAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNAYKFYQYDPTKWLISA
MYYLGLAYDLKTFSKNEIEKGMIQMHQKHLDAKKQSIYWGINKEDLPSMTIDEFNNLVEK
ENKKLMIINKTVLDVESFVNDHPGGLAYIKMGIGKDATSMFTGEVYAHSNAAKNLLCQFS
MLK


Translated Amino Acid sequence (All Frames)
Frame A:
yqkn*llikfynlfqkkflkqvilnqhvhf**qsyslv*vqhsllschlt*pqlvgc*wv
pqllv*w*lvmivfiklfqrih*liqlleql*cyhcyihsnltrfqkrimqkrnrqlf*m
vnnsrlmhipqpkvqiqldngqlvnsfgfyqlliglkiisqlkiyqikkikpkqsfqlql
ftfldlfssq*clnl*v*vds---

---ihglcgninitlkspllwvsfsqhw*lv*vgviglvvistlvyfvslqfniphswsi
hwlii*vtlhtmmnilqriql*lly*hlvkviitsimnsqmtietlinsinmiqlng*sl
qcii*awlmi*klspkmklkkv*fkctkni*tqrnnqsigvsikkiyhq*qsmnliiwlk
kkiks***stkpy*msnlllmitqvv*ltlkwvlvkmqlqcllvkfmliqmllkiyyvnf
qc*n

Frame B:
tkriny*snftisskrsf*nk*f*ismftfnnnlihwfkcnihyshaillnpnwldvngc
lsywfngnw**lys*nffkesis*fnywnncnvtivisipilqdfrke*crkeidscfkw
*tiqd*ctyhnrkyksn*tmgnw*illdfiny*lv*klfln*kfir*kr*nqsnrfncnc
lhfwiyflpndv*icrckwi---

---smgyvat*tlh*nrhfygsrfpnigswfrlg*lgwwlfllwctssrysstfhilgqf
igslfr*lsir**tyskgfscdcyiniw*rls*lps*ipk*l*krl*ilsi*sn*mvdlc
nvlfrlgl*fenflqk*n*krydsnapktfrrketinllgyq*rrftindnr*i**fg*k
rk*kvndnqqnrircrifc**sprwfslh*ngyw*rcnfnvyw*slcsfkcc*kfimsif
naki

Frame C:
PKELTIDQILQSLPKEVFETSNFKSACSLLITILFIGLSATFITLMPSYLTPIGWMLMGA
SVTGLMVIGNDCIHKTFSKNPLVNSIIGTIVMLPLLYPFQSYKISEKNNAEKKSTAVLNG
EQFKINAHTTTESTNPIRQWATGKFFWILSIINWSENYFSTKNLSDKKDKTKAIVSIAIV
YIFGFIFFPMMFKFVGVSGF---

---PWVMWQHKHYIKIATFMGLVFPTLVAGLGWGDWAGGYFYSGVLRLVTVQHSTFLVNS
LAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNAYKFYQYDPTKWLISA
MYYLGLAYDLKTFSKNEIEKGMIQMHQKHLDAKKQSIYWGINKEDLPSMTIDEFNNLVEK
ENKKLMIINKTVLDVESFVNDHPGGLAYIKMGIGKDATSMFTGEVYAHSNAAKNLLCQFS
MLK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE192 (VHE192Q) /CSM/VH/VHE1-D/VHE192Q.Seq.d/ 2202 0.0
VHQ401 (VHQ401Q) /CSM/VH/VHQ4-A/VHQ401Q.Seq.d/ 1178 0.0
VHA229 (VHA229Q) /CSM/VH/VHA2-B/VHA229Q.Seq.d/ 1162 0.0
VHD425 (VHD425Q) /CSM/VH/VHD4-B/VHD425Q.Seq.d/ 1160 0.0
VHH531 (VHH531Q) /CSM/VH/VHH5-B/VHH531Q.Seq.d/ 1076 0.0
VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/ 1072 0.0
VHK171 (VHK171Q) /CSM/VH/VHK1-C/VHK171Q.Seq.d/ 1047 0.0
VHB541 (VHB541Q) /CSM/VH/VHB5-B/VHB541Q.Seq.d/ 1047 0.0
VFM428 (VFM428Q) /CSM/VF/VFM4-B/VFM428Q.Seq.d/ 1047 0.0
VHD470 (VHD470Q) /CSM/VH/VHD4-C/VHD470Q.Seq.d/ 1043 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1047 0.0 2
DY893926|DY893926.1 CeleSEQ13391 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ13391, mRNA sequence. 48 2e-14 6
AL033501|AL033501.1 C.albicans cosmid Ca41C10. 72 2e-11 2
DY886427|DY886427.1 CeleSEQ2079 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ2079, mRNA sequence. 50 4e-11 3
DY892961|DY892961.1 CeleSEQ12104 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ12104, mRNA sequence. 50 4e-11 3
DY895351|DY895351.1 CeleSEQ15152 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ15152, mRNA sequence. 48 2e-10 4
DY885896|DY885896.1 CeleSEQ991 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ991, mRNA sequence. 48 3e-10 4
DY888809|DY888809.1 CeleSEQ6138 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ6138, mRNA sequence. 50 6e-10 3
DY886077|DY886077.1 CeleSEQ1581 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ1581, mRNA sequence. 48 1e-09 4
AL396412|AL396412.1 T3 end of clone AR0AA030B05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 54 6e-08 2
dna update 2007. 6.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 506 e-142
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 307 5e-82
AF085500_1(AF085500|pid:none) Mortierella alpina delta nine desa... 304 4e-81
Y18553_1(Y18553|pid:none) Mortierella alpina ole1 gene for stear... 303 9e-81
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9... 299 1e-79
AB195980_1(AB195980|pid:none) Mortierella alpina gene for omega9... 298 4e-79
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d... 295 2e-78
S52746(S52746;S52745) stearoyl-CoA 9-desaturase (EC 1.14.19.1) [... 291 4e-77
(Q12618) RecName: Full=Acyl-CoA desaturase; EC=1.14.19.... 290 6e-77
AP007162_283(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 290 6e-77
protein update 2009. 6.30
PSORT

psg: 0.75 gvh: 0.67 alm: 0.22 top: 0.63 tms: 0.33 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

40.0 %: plasma membrane
12.0 %: nuclear
12.0 %: endoplasmic reticulum
12.0 %: mitochondrial
12.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for VHE192 is pla

5' end seq. ID VHE192F
5' end seq.
>VHE192F.Seq
TACCAAAAGAATTAACTATTGATCAAATTTTACAATCTCTTCCAAAAGAAGTTTTTGAAA
CAAGTAATTTTAAATCAGCATGTTCACTTTTAATAACAATCTTATTCATTGGTTTAAGTG
CAACATTCATTACTCTCATGCCATCTTACTTAACCCCAATTGGTTGGATGTTAATGGGTG
CCTCAGTTACTGGTTTAATGGTAATTGGTAATGATTGTATTCATAAAACTTTTTCAAAGA
ATCCATTAGTTAATTCAATTATTGGAACAATTGTAATGTTACCATTGTTATATCCATTCC
AATCTTACAAGATTTCAGAAAAGAATAATGCAGAAAAGAAATCGACAGCTGTTTTAAATG
GTGAACAATTCAAGATTAATGCACATACCACAACCGAAAGTACAAATCCAATTAGACAAT
GGGCAACTGGTAAATTCTTTTGGATTTTATCAATTATTAATTGGTCTGAAAATTATTTCT
CAACTAAAAATTTATCAGATAAAAAAGATAAAACCAAAGCAATCGTTTCAATTGCAATTG
TTTACATTTTTGGATTTATTTTCTTCCCAATGATGTTTAAATTTGTAGGTGTAAGTGGAT
TCCNNNNNNNNNN
Length of 5' end seq. 613
3' end seq. ID VHE192Z
3' end seq.
>VHE192Z.Seq
NNNNNNNNNNATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATCGCCACTTTT
ATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGT
TATTTCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTCTTGGTCAAT
TCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCAAAGGATTCA
GTTGTGACTGCTATATTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCA
AATGACTATAGAAACGCTTATAAATTCTATCAATATGATCCAACTAAATGGTTGATCTCT
GCAATGTATTATTTAGGCTTGGCTTATGATTTGAAAACTTTCTCCAAAAATGAAATTGAA
AAAGGTATGATTCAAATGCACCAAAAACATTTAGACGCAAAGAAACAATCAATCTATTGG
GGTATCAATAAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGAA
AAAGAAAATAAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATCTTTTGTT
AATGATCACCCAGGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACTTCA
ATGTTTACTGGTGAAGTTTATGCTCATTCAAATGCTGCTAAAAATTTATTATGTCAATTT
TCAATGCTAAAATT
Length of 3' end seq. 734
Connected seq. ID VHE192P
Connected seq.
>VHE192P.Seq
TACCAAAAGAATTAACTATTGATCAAATTTTACAATCTCTTCCAAAAGAAGTTTTTGAAA
CAAGTAATTTTAAATCAGCATGTTCACTTTTAATAACAATCTTATTCATTGGTTTAAGTG
CAACATTCATTACTCTCATGCCATCTTACTTAACCCCAATTGGTTGGATGTTAATGGGTG
CCTCAGTTACTGGTTTAATGGTAATTGGTAATGATTGTATTCATAAAACTTTTTCAAAGA
ATCCATTAGTTAATTCAATTATTGGAACAATTGTAATGTTACCATTGTTATATCCATTCC
AATCTTACAAGATTTCAGAAAAGAATAATGCAGAAAAGAAATCGACAGCTGTTTTAAATG
GTGAACAATTCAAGATTAATGCACATACCACAACCGAAAGTACAAATCCAATTAGACAAT
GGGCAACTGGTAAATTCTTTTGGATTTTATCAATTATTAATTGGTCTGAAAATTATTTCT
CAACTAAAAATTTATCAGATAAAAAAGATAAAACCAAAGCAATCGTTTCAATTGCAATTG
TTTACATTTTTGGATTTATTTTCTTCCCAATGATGTTTAAATTTGTAGGTGTAAGTGGAT
TCC----------ATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATCGCCACT
TTTATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGT
GGTTATTTCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTCTTGGTC
AATTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCAAAGGAT
TCAGTTGTGACTGCTATATTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTC
CCAAATGACTATAGAAACGCTTATAAATTCTATCAATATGATCCAACTAAATGGTTGATC
TCTGCAATGTATTATTTAGGCTTGGCTTATGATTTGAAAACTTTCTCCAAAAATGAAATT
GAAAAAGGTATGATTCAAATGCACCAAAAACATTTAGACGCAAAGAAACAATCAATCTAT
TGGGGTATCAATAAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTT
GAAAAAGAAAATAAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATCTTTT
GTTAATGATCACCCAGGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACT
TCAATGTTTACTGGTGAAGTTTATGCTCATTCAAATGCTGCTAAAAATTTATTATGTCAA
TTTTCAATGCTAAAATT
Length of connected seq. 1327
Full length Seq ID -
Full length Seq. -
Length of full length seq. -