>VHE179 (VHE179Q) /CSM/VH/VHE1-D/VHE179Q.Seq.d/
AAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAATATCCCAAAACC
TAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCACCATTTCCAAGTG
CACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATAATATACCAATAG
GTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTGGATGGAATCATT
ATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATGTAAATTGGGATT
TAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGGGAATTTCAACAT
TTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTGCAAAGTTTTGGA
TAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAATTTAATTCAATTC
AATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAGAGGCAGCAAGTT
ATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAATTTTCATAGTCTATGAAAATA
CGATTGTACCAGATATAGTTGATAATGAATTTTCATCACCTTTTATCTCAATTTCAGTTT
TGAATATATTGAATCXXXXXXXXXX

IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDNIPIG
DNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWGISTF
SLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKVRIIGSEAASY
QCEIITTKEEQSIFIVYENTIVPDIVDNEFSSPFISISVLNILN---

Frame A:
k**ncyyiyfhyllf*ypkt*livkiii*qngiy*hhfqvhqekmlmy*ivmveliiyq*
viiqhilvn*lmeqeldgiiiqqmlmvwli*ifqim*igi**iigqdqvahilvvgefqh
fh*ilvkpf*lhvqvlqsfg*iqq*ckvihmdwdynliqfnyqvvhin*klesldqrqqv
invks*qpkrsnqfs*smkirlyqi*limnfhhllsqfqf*iy*---


Frame B:
nneiviiftfiiyyfnipkps*l*kllfnrmgyistiskctkrrc*cikllwwn**ytnr
**fniy**is*wskswmeslynkc*wyg*fkffk*cklgfnk*lgrikwhif*wlgnfni
fiey**nhfsymfryckvldrfnsdar*fiwigiti*fnsiikwytsiks*nhwirgskl
sm*nhnnqrgainfhsl*kydctrys***ifitfylnfsfeyie---


Frame C:
IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDNIPIG
DNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWGISTF
SLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKVRIIGSEAASY
QCEIITTKEEQSIFIVYENTIVPDIVDNEFSSPFISISVLNILN---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE179 (VHE179Q) /CSM/VH/VHE1-D/VHE179Q.Seq.d/                       1338   0.0
VHE155 (VHE155Q) /CSM/VH/VHE1-C/VHE155Q.Seq.d/                       1338   0.0
VHP538 (VHP538Q) /CSM/VH/VHP5-B/VHP538Q.Seq.d/                       1285   0.0
VHB803 (VHB803Q) /CSM/VH/VHB8-A/VHB803Q.Seq.d/                       1285   0.0
VHO194 (VHO194Q) /CSM/VH/VHO1-D/VHO194Q.Seq.d/                       1283   0.0
VHM674 (VHM674Q) /CSM/VH/VHM6-D/VHM674Q.Seq.d/                       1283   0.0
VHL405 (VHL405Q) /CSM/VH/VHL4-A/VHL405Q.Seq.d/                       1283   0.0
VHH656 (VHH656Q) /CSM/VH/VHH6-C/VHH656Q.Seq.d/                       1279   0.0
CHJ176 (CHJ176Q) /CSM/CH/CHJ1-D/CHJ176Q.Seq.d/                       1277   0.0
CHJ105 (CHJ105Q) /CSM/CH/CHJ1-A/CHJ105Q.Seq.d/                       1277   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AM456743|AM456743.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X233509.6, clone ENTAV 115.    36   0.16   6
AF474339|AF474339.1 Dictyostelium discoideum ABC transporter ABCC.7 (abcC7) gene, complete cds.    36   0.30   3
AC013402|AC013402.9 Homo sapiens BAC clone RP11-134N15 from 2, complete sequence.    42   0.51   3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.63   11
AC073447|AC073447.8 Homo sapiens chromosome 2, clone RP13-504N18, complete sequence.    44   0.78   5
AC201356|AC201356.1 Strongylocentrotus purpuratus clone R3-17B14, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42   1.00   2
BH161823|BH161823.1 ENTSU58TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34   1.2    3
DD391900|DD391900.1 Method and nucleic acids for the improved treatment of breast cell proliferative disorders.    46   1.3    1
DD391626|DD391626.1 Method and nucleic acids for the improved treatment of breast cell proliferative disorders.    46   1.3    1
DD209257|DD209257.1 test.                                          46   1.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE008691_1920(AE008691|pid:none) Thermoanaerobacter tengcongensi...    44   0.003
AB1151(AB1151) internalin proteins, probable peptidoglycan bound...    38   0.33
AE017341_213(AE017341|pid:none) Cryptococcus neoformans var. neo...    37   0.42
CP000644_3056(CP000644|pid:none) Aeromonas salmonicida subsp. sa...    37   0.55
CR940347_826(CR940347|pid:none) Theileria annulata strain Ankara...    36   1.2
CP001025_1096(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   1.6
CP000151_1147(CP000151|pid:none) Burkholderia sp. 383 chromosome...    35   1.6
CP000269_2198(CP000269|pid:none) Janthinobacterium sp. Marseille...    35   2.1
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    34   3.6
CP000614_1118(CP000614|pid:none) Burkholderia vietnamiensis G4 c...    34   3.6

 psg: 0.98  gvh: 0.73  alm: 0.41  top: 0.20  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VHE179 is exc

>VHE179F.Seq
AAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAATATCCCAAAACC
TAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCACCATTTCCAAGTG
CACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATAATATACCAATAG
GTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTGGATGGAATCATT
ATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATGTAAATTGGGATT
TAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGGGAATTTCAACAT
TTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTGCAAAGTTTTGGA
TAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAATTTAATTCAATTC
AATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAGAGGCAGCAAGTT
ATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAATTTTCATAGTCTATGAAAATA
CGATTGTACCAGATATAGTTGATAATGAATTTTCATCACCTTTTATCTCAATTTCAGTTT
TGAATATATTGAATCNNNNNNNNNN