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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE125
Library VH
(Link to library)
Clone ID VHE125
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10968-1
Original site URL
Representative seq. ID VHE125P
(Link to Original site)
Representative DNA sequence 
>VHE125 (VHE125Q) /CSM/VH/VHE1-B/VHE125Q.Seq.d/
AAAAAATTTTNTTTCCAAATTATTTTTATATTATACATAATTTTAATAATAATAATAATA
ATAATAATAATAAATAAGTTATTATTATATATATTTACCCCTATTTATTATTATTATTTT
TATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAATAAAAAAAATAAAAAAAAAATA
AAAAAAAATGAATATTAATATAAAGAAATTAGATGGTNCAATTTATAGTATTGAAGGNGT
ATCTTTANAAACTACTGTNCCANAACTTAAAAAATTAATTGAAGCCAAATCTTCAATTTC
AATCCCACTTCAAAGAGTAATTTATAAAGGAAAAGTATTACGTGATGATAAAACTTTGCA
ATTTTATAATATTGAAGATGGAGTTACATTACATTTAGCANAAAGAGCACCAGAAGCAAA
TCCATCACAATCAAATAGTGGAAGTAGTGGTAGTGGCAGTAGTAGTACTGATAGTATTAG
NGGNGGTAGTAATTCACCAATTGATAGTAATAATATATTGAATACXXXXXXXXXXGTTAT
AACACAAAGTCCAATGCTTGCACCATTCTNTAGAATGACAAGTGAATATCTTCGTGATGT
TTATGAATCCTCTCCACCACTTGATTCATTACCATTAATTAATGTTAGTTTACCTGAACA
ACAACAACAACAACAAAATAATAACAATAGAAATACTACTACAACAACAACTACCACCAC
AACAACTACACCTTCAAGATCTACATCATCGAATATTATTCCACCAGAATGGATGGAAAC
AATCGAAATTGATGAAGCAAGACAATCATCTGGAACATCAAGAACACCAAGTGCAACTTA
TTTTAAAGGAAAAAAGAAACCTACCACAAATAATAGTAATAATAATAATAATAACAACAA
TAACAATANCAATAATAATACTAGCGATATCNCATAATAATAATAATAACAATAATAATA
ATAACAACAACTCAACCAATTCACCATTCGAAACTGTTTTACAAAATTCTACAGAAGGAA
CTCAAGTAAAATATGAAGATTTAATCAAAAACGAAGAAGCCAAGGCTTTATCACAAATGT
ACCAAAACATCCTCAAAAAATAAAAACTTCTCCTCAAAAACATGTAAATAATAAATAAAG
NA
sequence update 2002.10.25
Translated Amino Acid sequence 
knfxsklflyyt*f**********isyyyiylplfiiiifi*iiknys*skkikkikkk*
KKMNINIKKLDGXIYSIEGVSLXTTVPXLKKLIEAKSSISIPLQRVIYKGKVLRDDKTLQ
FYNIEDGVTLHLAXRAPEANPSQSNSGSSGSGSSSTDSIXGGSNSPIDSNNILN---

---VITQSPMLAPFXRMTSEYLRDVYESSPPLDSLPLINVSLPEQQQQQQNNNNRNTTTT
TTTTTTTTPSRSTSSNIIPPEWMETIEIDEARQSSGTSRTPSATYFKGKKKPTTNNSNNN
NNNNNNNXNNNTSDIX*****q****qqlnqftirncftkfyrrnsski*rfnqkrrsqg
fitnvpkhpqkiktspqkhvnnk*x
Translated Amino Acid sequence (All Frames) 
Frame A:
kkfxfqiifilyiiliiiiiiiiinklllyiftpiyyyyfylnnkklfik*knkknkkki
kkney*ykeirwxnl*y*rxifxnycxxt*kin*sqifnfnptsksnl*rksit***nfa
il*y*rwsyitfsxkstrsksitik*wk*w*wq**y**y*xx**ftn****yiey---

---VITQSPMLAPFXRMTSEYLRDVYESSPPLDSLPLINVSLPEQQQQQQNNNNRNTTTT
TTTTTTTTPSRSTSSNIIPPEWMETIEIDEARQSSGTSRTPSATYFKGKKKPTTNNSNNN
NNNNNNNXNNNTSDIX*****q****qqlnqftirncftkfyrrnsski*rfnqkrrsqg
fitnvpkhpqkiktspqkhvnnk*x

Frame B:
knfxsklflyyt*f**********isyyyiylplfiiiifi*iiknys*skkikkikkk*
KKMNINIKKLDGXIYSIEGVSLXTTVPXLKKLIEAKSSISIPLQRVIYKGKVLRDDKTLQ
FYNIEDGVTLHLAXRAPEANPSQSNSGSSGSGSSSTDSIXGGSNSPIDSNNILN---

---l*hkvqclhhsxe*qvnifvmfmnplhhlihyh*lmlvylnnnnnnkiitieillqq
qlppqqlhlqdlhhrilfhqngwkqsklmkqdnhlehqehqvqlilkekrnlpqiiviii
iittitixiiilaishnnnnnnnnnnnnstnspfetvlqnstegtqvkyedlikneeaka
lsqmyqnilkk*klllknm*iinkx

Frame C:
kixfpnyfyiihnfnnnnnnnnnk*viiiyiypyllllflfk**kiihkvkk*kk*kknk
kk*ili*rn*mvqfivlkxylxkllxxnlkn*lkpnlqfqshfke*fikekyyvmiklcn
fiilkmelhyi*xkehqkqihhnqivevvvvavvvlivlxxvvihqliviiy*i---

---yntksnactil*ndk*iss*cl*ilstt*fitin*c*ft*ttttttk**q*kyyynn
nyhhnnytfkiyiieyystrmdgnnrn**sktiiwnikntkcnlf*rkketyhk******
**qq*qxq**y*ryxiiiiitiiiitttqpihhsklfykilqkelk*nmki*sktkkprl
yhkctktssknknfssktck**ik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE125 (VHE125Q) /CSM/VH/VHE1-B/VHE125Q.Seq.d/                        815   0.0
VHI650 (VHI650Q) /CSM/VH/VHI6-C/VHI650Q.Seq.d/                        613   e-174
VHI166 (VHI166Q) /CSM/VH/VHI1-C/VHI166Q.Seq.d/                        613   e-174
VHB663 (VHB663Q) /CSM/VH/VHB6-C/VHB663Q.Seq.d/                        613   e-174
SHG671 (SHG671Q) /CSM/SH/SHG6-C/SHG671Q.Seq.d/                        613   e-174
SHF507 (SHF507Q) /CSM/SH/SHF5-A/SHF507Q.Seq.d/                        613   e-174
SHD795 (SHD795Q) /CSM/SH/SHD7-D/SHD795Q.Seq.d/                        613   e-174
CHE701 (CHE701Q) /CSM/CH/CHE7-A/CHE701Q.Seq.d/                        613   e-174
AHN458 (AHN458Q) /CSM/AH/AHN4-C/AHN458Q.Seq.d/                        613   e-174
AHL609 (AHL609Q) /CSM/AH/AHL6-A/AHL609Q.Seq.d/                        613   e-174
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC184369|AC184369.1 Strongylocentrotus purpuratus clone R3-1011G16, WORKING DRAFT SEQUENCE, 26 unordered pieces.    52   0.036  1
EG629938|EG629938.1 EMBRYOF088217M13 POSSUM_01-POSSUM-C-EMBRYO-2KB Trichosurus vulpecula cDNA clone 1061028995196, mRNA sequence.    50   0.14   1
AC149991|AC149991.2 Strongylocentrotus purpuratus clone R3-60A2, WORKING DRAFT SEQUENCE, 13 unordered pieces.    50   0.14   1
AC184517|AC184517.1 Strongylocentrotus purpuratus clone R3-3A13, WORKING DRAFT SEQUENCE, 25 unordered pieces.    50   0.14   1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    50   0.14   1
EK225313|EK225313.1 1095460156784 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005707342 3', genomic survey sequence.    46   0.15   2
AC176291|AC176291.1 Strongylocentrotus purpuratus clone R3-3057J7, WORKING DRAFT SEQUENCE, 27 unordered pieces.    34   0.32   2
EC319940|EC319940.1 EMBRYOF088886F18 POSSUM_01-POSSUM-C-EMBRYO-2KB Trichosurus vulpecula cDNA clone 1061024556760, mRNA sequence.    38   0.40   2
DT731723|DT731723.1 EST1165573 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1T943, mRNA sequence.    48   0.56   1
DT731722|DT731722.1 EST1165572 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1T943, mRNA sequence.    48   0.56   1
dna update 2007. 6.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU928179_580(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    55   6e-06
AC152347_1(AC152347|pid:none) Medicago truncatula clone mth2-28c...    54   1e-05
AC138131_5(AC138131|pid:none) Medicago truncatula clone mth2-21h...    54   1e-05
(Q9NIF3) RecName: Full=Ubiquilin; AltName: Full=Suppressor of No...    52   5e-05
EU967057_1(EU967057|pid:none) Zea mays clone 299191 unknown mRNA.      52   5e-05
AM270178_48(AM270178|pid:none) Aspergillus niger contig An08c023...    51   7e-05
(P48510) RecName: Full=Ubiquitin domain-containing protein DSK2;...    51   9e-05
AE017348_176(AE017348|pid:none) Cryptococcus neoformans var. neo...    50   1e-04
BX510301_2(BX510301|pid:none) Zebrafish DNA sequence from clone ...    50   1e-04
AY035177_1(AY035177|pid:none) Arabidopsis thaliana putative ubiq...    49   3e-04
protein update 2009. 6.30
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHE125 is cyt
5' end seq. ID VHE125F
5' end seq. 
>VHE125F.Seq
AAAAAATTTTNTTTCCAAATTATTTTTATATTATACATAATTTTAATAATAATAATAATA
ATAATAATAATAAATAAGTTATTATTATATATATTTACCCCTATTTATTATTATTATTTT
TATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAATAAAAAAAATAAAAAAAAAATA
AAAAAAAATGAATATTAATATAAAGAAATTAGATGGTNCAATTTATAGTATTGAAGGNGT
ATCTTTANAAACTACTGTNCCANAACTTAAAAAATTAATTGAAGCCAAATCTTCAATTTC
AATCCCACTTCAAAGAGTAATTTATAAAGGAAAAGTATTACGTGATGATAAAACTTTGCA
ATTTTATAATATTGAAGATGGAGTTACATTACATTTAGCANAAAGAGCACCAGAAGCAAA
TCCATCACAATCAAATAGTGGAAGTAGTGGTAGTGGCAGTAGTAGTACTGATAGTATTAG
NGGNGGTAGTAATTCACCAATTGATAGTAATAATATATTGAATACNNNNNNNNNN
Length of 5' end seq. 535
3' end seq. ID VHE125Z
3' end seq. 
>VHE125Z.Seq
NNNNNNNNNNGTTATAACACAAAGTCCAATGCTTGCACCATTCTNTAGAATGACAAGTGA
ATATCTTCGTGATGTTTATGAATCCTCTCCACCACTTGATTCATTACCATTAATTAATGT
TAGTTTACCTGAACAACAACAACAACAACAAAATAATAACAATAGAAATACTACTACAAC
AACAACTACCACCACAACAACTACACCTTCAAGATCTACATCATCGAATATTATTCCACC
AGAATGGATGGAAACAATCGAAATTGATGAAGCAAGACAATCATCTGGAACATCAAGAAC
ACCAAGTGCAACTTATTTTAAAGGAAAAAAGAAACCTACCACAAATAATAGTAATAATAA
TAATAATAACAACAATAACAATANCAATAATAATACTAGCGATATCNCATAATAATAATA
ATAACAATAATAATAATAACAACAACTCAACCAATTCACCATTCGAAACTGTTTTACAAA
ATTCTACAGAAGGAACTCAAGTAAAATATGAAGATTTAATCAAAAACGAAGAAGCCAAGG
CTTTATCACAAATGTACCAAAACATCCTCAAAAAATAAAAACTTCTCCTCAAAAACATGT
AAATAATAAATAAAGNA
Length of 3' end seq. 617
Connected seq. ID VHE125P
Connected seq. 
>VHE125P.Seq
AAAAAATTTTNTTTCCAAATTATTTTTATATTATACATAATTTTAATAATAATAATAATA
ATAATAATAATAAATAAGTTATTATTATATATATTTACCCCTATTTATTATTATTATTTT
TATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAATAAAAAAAATAAAAAAAAAATA
AAAAAAAATGAATATTAATATAAAGAAATTAGATGGTNCAATTTATAGTATTGAAGGNGT
ATCTTTANAAACTACTGTNCCANAACTTAAAAAATTAATTGAAGCCAAATCTTCAATTTC
AATCCCACTTCAAAGAGTAATTTATAAAGGAAAAGTATTACGTGATGATAAAACTTTGCA
ATTTTATAATATTGAAGATGGAGTTACATTACATTTAGCANAAAGAGCACCAGAAGCAAA
TCCATCACAATCAAATAGTGGAAGTAGTGGTAGTGGCAGTAGTAGTACTGATAGTATTAG
NGGNGGTAGTAATTCACCAATTGATAGTAATAATATATTGAATAC----------GTTAT
AACACAAAGTCCAATGCTTGCACCATTCTNTAGAATGACAAGTGAATATCTTCGTGATGT
TTATGAATCCTCTCCACCACTTGATTCATTACCATTAATTAATGTTAGTTTACCTGAACA
ACAACAACAACAACAAAATAATAACAATAGAAATACTACTACAACAACAACTACCACCAC
AACAACTACACCTTCAAGATCTACATCATCGAATATTATTCCACCAGAATGGATGGAAAC
AATCGAAATTGATGAAGCAAGACAATCATCTGGAACATCAAGAACACCAAGTGCAACTTA
TTTTAAAGGAAAAAAGAAACCTACCACAAATAATAGTAATAATAATAATAATAACAACAA
TAACAATANCAATAATAATACTAGCGATATCNCATAATAATAATAATAACAATAATAATA
ATAACAACAACTCAACCAATTCACCATTCGAAACTGTTTTACAAAATTCTACAGAAGGAA
CTCAAGTAAAATATGAAGATTTAATCAAAAACGAAGAAGCCAAGGCTTTATCACAAATGT
ACCAAAACATCCTCAAAAAATAAAAACTTCTCCTCAAAAACATGTAAATAATAAATAAAG
NA
Length of connected seq. 1132
Full length Seq ID -
Full length Seq. -
Length of full length seq. -