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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE103
Library VH
(Link to library)
Clone ID VHE103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11269-1
Original site URL
Representative seq. ID VHE103P
(Link to Original site)
Representative DNA sequence 
>VHE103 (VHE103Q) /CSM/VH/VHE1-A/VHE103Q.Seq.d/
AACAATTCTTGGTTCAATCGCTTGTTCAAGAGTACCATTATATGAAGAGGATTTATTAAC
AATTCTAGCTAGACCAGAACAAAANGAAAAACAATTCCCAACTGCTCTTTGGTCAAGAAT
TTATCGTAGTATTTCAAGTTTATTAGTTCAAACATTGGAAAATGAAAATCTAAACAACAA
CGATAACATTGTAAAGGATGAAATTGGTTTAGAATTTTTCCATAACCAATTGAAATTGGC
AATTTTAAAACGTTATCATTCACTAACTGATAGTTCCGTAAAGATTCATAAATTATTAGC
CAATTATTATTTGAATAAAGCTGATCCAGATAATACAAAACATTGGTCAGGTCAAGATAG
TGTANCATTCTCAGAGTTACCATACCATTTGACAAAGGCNNGATTATTCACTCAATTGGA
AGAGACATTATGTAATCTTAAATTTGTTGAAAGAAAATGTAAATTTGGTTTGGCATTTGA
ATTGATTTCGGATTATCTCGAGATTACTGGTGATGATATAGTAAATGAAAAAGAGAAAAA
TTCATTGAATGCACCATCTCGTTTAATTAAAAACAAAGATATTTTGGAACATATTAAAGA
TXXXXXXXXXXCGTATTAGTGATGTTGTAAGCTCTTCNGATGCCTCTGGTAGAATTTTCT
CTTCATCAGATGATGGTATCATAAAGAGTTGGTATCCAGTTGNTGGTTCTTGTTTAGCTA
CATTAACTGGTCATTNTGGTCCAATTAAAACAAGCTCAATTCAATCCAAACTNTGGTGGT
GGTGGTAGTTCAAGTTTCTCATCATTCTCATCATTCTCATCTTCATCTGATGCTCCAGTA
ACCCTTTCAATTGCATCTTCATCAGATGATGGTACAGTTAAACTTTGGGAATTCAATTCA
GCAACAGCCACAACATCCGCACATAAAGGTTCCATTAATCAATGTGTTTTNTCAAAGGAT
GGTAAATATGTCGCAACNTGTGGTCAAGATTGTGTATTAAATATTTGGGACGCTAAAACT
CATATAAACTTG
sequence update 2002.10.25
Translated Amino Acid sequence 
TILGSIACSRVPLYEEDLLTILARPEQXEKQFPTALWSRIYRSISSLLVQTLENENLNNN
DNIVKDEIGLEFFHNQLKLAILKRYHSLTDSSVKIHKLLANYYLNKADPDNTKHWSGQDS
VXFSELPYHLTKAXLFTQLEETLCNLKFVERKCKFGLAFELISDYLEITGDDIVNEKEKN
SLNAPSRLIKNKDILEHIKD---

---RISDVVSSSDASGRIFSSSDDGIIKSWYPVXGSCLATLTGHXGPIKTSSIQSKLWWW
W*fkfliiliilifi*cssnpfncifir*wys*tlgiqfsnshnirt*rfh*smcfxkgw
*icrnxwsrlcikylgr*nsykl
Translated Amino Acid sequence (All Frames) 
Frame A:
nnswfnrlfkstii*rgfinnss*trtkxktipncslvknls*yfkfissnigk*kskqq
r*hckg*nwfrifp*pieignfktlsftn**frkds*iisqllfe*s*sr*yktlvrsr*
cxilrvtipfdkgxiihsigrdim*s*ic*kkm*iwfgi*idfglsrdyw**ysk*krek
fiectisfn*kqryfgty*r---

---RISDVVSSSDASGRIFSSSDDGIIKSWYPVXGSCLATLTGHXGPIKTSSIQSKLWWW
W*fkfliiliilifi*cssnpfncifir*wys*tlgiqfsnshnirt*rfh*smcfxkgw
*icrnxwsrlcikylgr*nsykl

Frame B:
TILGSIACSRVPLYEEDLLTILARPEQXEKQFPTALWSRIYRSISSLLVQTLENENLNNN
DNIVKDEIGLEFFHNQLKLAILKRYHSLTDSSVKIHKLLANYYLNKADPDNTKHWSGQDS
VXFSELPYHLTKAXLFTQLEETLCNLKFVERKCKFGLAFELISDYLEITGDDIVNEKEKN
SLNAPSRLIKNKDILEHIKD---

---vlvml*alxmplvefslhqmmvs*rvgiqlxvlv*lh*lvixvqlkqaqfnpnxggg
gsssfssfssfssssdapvtlsiasssddgtvklwefnsatattsahkgsinqcvxskdg
kyvatcgqdcvlniwdakthinl

Frame C:
qflvqslvqeyhymkriy*qf*ldqnkxknnsqllfgqefivvfqvy*fkhwkmki*ttt
itl*rmklv*nfsitn*nwqf*nviih*livp*rfiny*piii*ikliqiiqnigqvkiv
xhsqsyhti*qrxdyslnwkrhyvilnllkenvnlvwhln*friisrllvmi**mkkrki
h*mhhlv*lktkifwnilk---

---y**ccklfxclw*nflfir*wyhkelvssxwflfsyinwsxwsn*nklnsiqtxvvv
vvqvshhshhshlhlmlq*pfqlhlhqmmvqlnfgnsiqqqpqhphikvplinvfxqrmv
nmsqxvvkivy*ifgtlkli*t
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE103 (VHE103Q) /CSM/VH/VHE1-A/VHE103Q.Seq.d/                       1927   0.0
AHD435 (AHD435Q) /CSM/AH/AHD4-B/AHD435Q.Seq.d/                       1104   0.0
VHL414 (VHL414Q) /CSM/VH/VHL4-A/VHL414Q.Seq.d/                       1057   0.0
VFM679 (VFM679Q) /CSM/VF/VFM6-D/VFM679Q.Seq.d/                        775   0.0
VSF740 (VSF740Q) /CSM/VS/VSF7-B/VSF740Q.Seq.d/                        462   e-129
VFM774 (VFM774Q) /CSM/VF/VFM7-D/VFM774Q.Seq.d/                        101   2e-20
VFL540 (VFL540Q) /CSM/VF/VFL5-B/VFL540Q.Seq.d/                         38   0.26
FC-IC0414 (FC-IC0414Q) /CSM/FC-IC/FC-IC0414Q.Seq.d/                    38   0.26
VSK332 (VSK332Q) /CSM/VS/VSK3-B/VSK332Q.Seq.d/                         36   1.0
VSC172 (VSC172Q) /CSM/VS/VSC1-C/VSC172Q.Seq.d/                         36   1.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

G64997|G64997.1 DH0123 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideum STS genomic 5', sequence tagged site.    66   2e-06  1
CC231294|CC231294.1 CH261-18L14_RM1.1 CH261 Gallus gallus genomic clone CH261-18L14, DNA sequence.    42   0.002  2
BV682656|BV682656.1 GBL031815 Ensembl chicken genome sequences browser, chromosome 3 Gallus gallus STS genomic, sequence tagged site.    42   0.002  2
BV682655|BV682655.1 GBL031814 Ensembl chicken genome sequences browser, chromosome 3 Gallus gallus STS genomic, sequence tagged site.    42   0.002  2
AC177329|AC177329.1 Strongylocentrotus purpuratus clone R3-1032L7, WORKING DRAFT SEQUENCE, 12 unordered pieces.    52   0.018  4
AX127152|AX127152.1 Sequence 7068 from Patent EP1108790.           52   0.032  1
BA000036|BA000036.3 Corynebacterium glutamicum ATCC 13032 DNA, complete genome.    52   0.032  1
BX927156|BX927156.1 Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,  complete genome; segment 9/10.    52   0.032  1
AL591001|AL591001.3 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-509C12.    36   0.077  2
AL450336|AL450336.7 Human DNA sequence from clone RP11-24C14 on chromosome 6.    36   0.079  2
dna update 2007. 6.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000492_814(CP000492|pid:none) Chlorobium phaeobacteroides DSM ...    50   2e-10
AF323585_1(AF323585|pid:none) Podospora anserina beta transducin...    52   4e-10
CU640366_848(CU640366|pid:none) Podospora anserina genomic DNA c...    52   1e-09
CU074316_1(CU074316|pid:none) Podospora anserina genomic DNA, NW...    52   1e-09
CU074274_1(CU074274|pid:none) Podospora anserina genomic DNA, NW...    55   2e-09
BA000045_4351(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    53   3e-09
AM746676_3634(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    49   5e-08
(Q00808) RecName: Full=Vegetative incompatibility protein HET-E-...    49   6e-08
CP001344_3209(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    46   8e-08
CU633453_76(CU633453|pid:none) Podospora anserina genomic DNA ch...    46   1e-07
protein update 2009. 6.30
PSORT 

 psg: 0.56  gvh: 0.42  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHE103 is cyt
5' end seq. ID VHE103F
5' end seq. 
>VHE103F.Seq
AACAATTCTTGGTTCAATCGCTTGTTCAAGAGTACCATTATATGAAGAGGATTTATTAAC
AATTCTAGCTAGACCAGAACAAAANGAAAAACAATTCCCAACTGCTCTTTGGTCAAGAAT
TTATCGTAGTATTTCAAGTTTATTAGTTCAAACATTGGAAAATGAAAATCTAAACAACAA
CGATAACATTGTAAAGGATGAAATTGGTTTAGAATTTTTCCATAACCAATTGAAATTGGC
AATTTTAAAACGTTATCATTCACTAACTGATAGTTCCGTAAAGATTCATAAATTATTAGC
CAATTATTATTTGAATAAAGCTGATCCAGATAATACAAAACATTGGTCAGGTCAAGATAG
TGTANCATTCTCAGAGTTACCATACCATTTGACAAAGGCNNGATTATTCACTCAATTGGA
AGAGACATTATGTAATCTTAAATTTGTTGAAAGAAAATGTAAATTTGGTTTGGCATTTGA
ATTGATTTCGGATTATCTCGAGATTACTGGTGATGATATAGTAAATGAAAAAGAGAAAAA
TTCATTGAATGCACCATCTCGTTTAATTAAAAACAAAGATATTTTGGAACATATTAAAGA
TNNNNNNNNNN
Length of 5' end seq. 611
3' end seq. ID VHE103Z
3' end seq. 
>VHE103Z.Seq
NNNNNNNNNNCGTATTAGTGATGTTGTAAGCTCTTCNGATGCCTCTGGTAGAATTTTCTC
TTCATCAGATGATGGTATCATAAAGAGTTGGTATCCAGTTGNTGGTTCTTGTTTAGCTAC
ATTAACTGGTCATTNTGGTCCAATTAAAACAAGCTCAATTCAATCCAAACTNTGGTGGTG
GTGGTAGTTCAAGTTTCTCATCATTCTCATCATTCTCATCTTCATCTGATGCTCCAGTAA
CCCTTTCAATTGCATCTTCATCAGATGATGGTACAGTTAAACTTTGGGAATTCAATTCAG
CAACAGCCACAACATCCGCACATAAAGGTTCCATTAATCAATGTGTTTTNTCAAAGGATG
GTAAATATGTCGCAACNTGTGGTCAAGATTGTGTATTAAATATTTGGGACGCTAAAACTC
ATATAAACTTG
Length of 3' end seq. 431
Connected seq. ID VHE103P
Connected seq. 
>VHE103P.Seq
AACAATTCTTGGTTCAATCGCTTGTTCAAGAGTACCATTATATGAAGAGGATTTATTAAC
AATTCTAGCTAGACCAGAACAAAANGAAAAACAATTCCCAACTGCTCTTTGGTCAAGAAT
TTATCGTAGTATTTCAAGTTTATTAGTTCAAACATTGGAAAATGAAAATCTAAACAACAA
CGATAACATTGTAAAGGATGAAATTGGTTTAGAATTTTTCCATAACCAATTGAAATTGGC
AATTTTAAAACGTTATCATTCACTAACTGATAGTTCCGTAAAGATTCATAAATTATTAGC
CAATTATTATTTGAATAAAGCTGATCCAGATAATACAAAACATTGGTCAGGTCAAGATAG
TGTANCATTCTCAGAGTTACCATACCATTTGACAAAGGCNNGATTATTCACTCAATTGGA
AGAGACATTATGTAATCTTAAATTTGTTGAAAGAAAATGTAAATTTGGTTTGGCATTTGA
ATTGATTTCGGATTATCTCGAGATTACTGGTGATGATATAGTAAATGAAAAAGAGAAAAA
TTCATTGAATGCACCATCTCGTTTAATTAAAAACAAAGATATTTTGGAACATATTAAAGA
T----------CGTATTAGTGATGTTGTAAGCTCTTCNGATGCCTCTGGTAGAATTTTCT
CTTCATCAGATGATGGTATCATAAAGAGTTGGTATCCAGTTGNTGGTTCTTGTTTAGCTA
CATTAACTGGTCATTNTGGTCCAATTAAAACAAGCTCAATTCAATCCAAACTNTGGTGGT
GGTGGTAGTTCAAGTTTCTCATCATTCTCATCATTCTCATCTTCATCTGATGCTCCAGTA
ACCCTTTCAATTGCATCTTCATCAGATGATGGTACAGTTAAACTTTGGGAATTCAATTCA
GCAACAGCCACAACATCCGCACATAAAGGTTCCATTAATCAATGTGTTTTNTCAAAGGAT
GGTAAATATGTCGCAACNTGTGGTCAAGATTGTGTATTAAATATTTGGGACGCTAAAACT
CATATAAACTTG
Length of connected seq. 1022
Full length Seq ID -
Full length Seq. -
Length of full length seq. -